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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057359 ID=TCONS_00057359|Name=TCONS_00057359|organism=Clytia hemisphaerica|type=transcript|length=2666bp
GTTAGTACCTACTCCCCCAATGAAATCAATTTGCatttattctatatact
gaataATCGGACATCGGATTCGACGGAGGAGGTCTGTTGATAAAGTCAGT
TTCAATGCCTATATAAGGTCAATGTAcaagatttattgattttttattct
AACTCATTACTTTAGATTGGTTAGTACCCACTCCCCCAATGAAAGGACTC
AATCAATTCATACTTTATTAATTCATCGTTTTCGTCCTttcgtaattttt
tttatttattcatccAAGAAGATTTCTGTCTGAACTTCACTTCTAGAACA
TCGAGAACCATTGCTAAGAGATACCCTTCACAACAAAACTTTAAAGATAA
TCAAAGATGACATTTTGTAAATTTCTTCTACTCGTGTTGAAATTTCCTTT
GATTTTCGGTAAATATGAAACCCCTGATATGCCGTTCCTCCCCTTCAAAA
TGGAAAGTCAAAACACGGCCATTTCCGGACCTTCACCGTGGTTGATTCAA
GAATTCACTTCCAAACACAAATGCTTCAAAACTTGTCTTCAAAACTTCAC
GCTTTGTGGGCATGTTCAATATAAAGAGATTTCTGCTAATCGTTGGTTTT
GTCAActttatgacgtcattgaaaACCTGTTCGATTACTTGGTGTCACAG
ATAGGTGAGACTTTGTATTCAGCGCAACACCAAGACCTTGACTGCAGCGA
TTGGAAGGACAGAGGGTACACAATACCAGGAACTTATTGGATCTTTCGCA
ACAGAACAAAGATGAGAACAGTTTGCAATACAGGAAATCCACCTTGGACC
CTCATCCAAAAGCGAACGAGTGCGTACGACTTCAACCGCTCGTGGGAAGA
ATACAAAAATGGGTTTGGAGATCCGGAAACTAATTTTTGGATCGGGAACG
ACAAAATCCACAAGTTGACGTACGGTCGAGAGATGCAAATCCGTTTCACT
GGTGAGCCCTATAGTAAGCCCAAGAAATTTTGCATTTACACCGGTTTCTA
TATTGAGGGCGAAGAAAATAAATACCGCCTGCATACGGGTGCTCATACAG
GCGGTAGTGATACTTACGCCGGTGATTGGGCTCTTCACAATGGTTCTCTT
TTTTCGGTGCGCTCTCAAGATAATGATGGTTGGGCAAACCATAATTGTGC
TGTTAGGTTCAAGTTAAATGGTTGGTGGCTGGGTATAGTAGAGGATGGAA
CTCCTTACTGTGCTGAACTTGCATTCAATGGTGATTGGGACGGACAGAGC
CCCGATACTGGACCCTTTTGGAAGTCTTTAGACGGATATAAGTCCTTGAA
GGCTACAACAATGGAAATTCGATTCAAAGAACTTTAACATGTTCTTCCAA
TTGATAAATTGAGTAATTGGGCgagacaaatttaattttttaatttattg
ttctacgggaaaaccttcagaaaaatattggtTGGTCGGTATAATAGaaa
taagtttttcaaaatctaggTTTGGTAGGTCAAGTTCTAAAACTCTAGAC
TTTTCTTCTTACTCGATGAGTGGACTTTCGTGCTTTTCCATTGTTCAAAT
TTCAATTCATCCAATTTCTGGGATGAATTTACACTTTTTCAACCTGTTCA
GTtaaaaaaactgcaaaaaactTGTAAAGTCCATCCTTCAGCTTTGCaaa
ttaattattattatttttctcgatatttgaaaaaaaaacagggtcggtcg
ggcccgtagaacaatgATTTATTTTGGCTCCGTATAAGATACTTAGAAGT
TTCATGCCATAATAAATGATGAcgttatttaaaggttttatttttacata
agtgttcccgtttcatatcagacacatatttcatatcaggacagtgacTG
ATTGTTAtaatatgctgatataagcgataaatatttttcttttccccttt
ctgaccaatcttgctccgcacccgtgtcaatccaatgtgaaaaagcttgt
gaattaaaattGATGAATAAGCAAACGATATATAGATAGGCGCTGTGATA
TAGTGGTCATTGACCTTGGTTGCTGCACGGGCGACTGAGGTTCGATTCCC
ACTCGCAGCGGTTCACTTGCCGAATGAATGAACCTTCAACCCATGCCATG
TGAGGGGAATTGGGTAGTCAGTCCAAGGGGCTGACGGGGCGCTCATTGAA
AGCGTCTATAGTTGCGAAAATAGGCCTCAAAGCCTCCTGCAACTCAACCA
AATTGACAATAGAAATATCACTGTTATTTAAGCCACGATAAACTTTCAAT
ATTCATAAATGAAAAGGTGTTGTGACGAGTGTGGGTATTTTGTTGAGGTA
GAAGGAAACAAACAAAAACCTCATGTTGAGAAAAGACTCTAAAATAATAA
TGAACATGGAATATATTAATTAAAAAAAAAACTTGCACCAAATTTTACTG
AGCACTTTTAGACTAAATTCTGCGTATTGTAACCTTTTATTTATTATCCA
CGATTTTTAATTCTTAGATTAATTTAAACTATCCAGGAATATAATAATTT
TGATCTTATTCGAAATATCTTAACAGTTTCACGGTTTGAACTACCTTATT
GGGGGAAAAATGTTGTTGAGTTATGAGttatttagtcgggttttttttcg
tcggggaaaaatttcgtcacctagaggcattttcgtcactttcccccgac
caaaatttcaaattcg Run BLAST on NCBI transcript from alignment at scaffold_288:368643..372615- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057359 ID=TCONS_00057359|Name=TCONS_00057359|organism=Clytia hemisphaerica|type=transcript|length=3973bp|location=Sequence derived from alignment at scaffold_288:368643..372615- (Clytia hemisphaerica)
GTTAGTACCTACTCCCCCAATGAAATCAATTTGCATTTATTCTATATACT
GAATAATCGGACATCGGATTCGACGGAGGAGGTCTGTTGATAAAGTCAGT
TTCAATGCCTATATAAGGTCAATGTACAAGATTTATTGATTTTTTATTCT
AACTCATTACTTTAGATTGGTTAGTACCCACTCCCCCAATGAAAGGACTC
AATCAATTCATACTTTATTAATTCATCGTTTTCGTCCTTTCGTAATTTTT
TTTATTTATTCATCCAAGAAGATTTCTGTCTGAACTTCACTTCTAGAACA
TCGAGAACCATTGCTAAGGTATGTAGGGTATTTTTATTAATGAATTCTTT
GAGTTTTGTTAACTACTCATAAATATTTTTGACAACGATTGAATTTAGTG
GTTTCTTTGTTTTCGAGTGGTATATTTTTTAAGGCCTCTGTTACTTTATT
TTTCTTTTTTGGACCTACCCCGGTGGGGTGAAGGTCCTATAAATTAACCC
GTGTTCGTTAGTTAGTTAGTTAGTTAGTTCGTTCGTTCGTTAGTTACCAA
CTTTTCTCGAGATTGGCTCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATAGATGCACATTAATACT
GCCGAAAAGGTGTCGAAAACTGTTTGCCGAAAAAAAAATTTTTCCGGTCT
GTAGAACCGGAAATGTGCCGGAAATCGTCGTTTTTTCACATTTCCGTCAC
ATTTTTTCAACTTATTTAATTGTTTCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCATTACATTAGATTG
GTTAGTACCCACTCCCCCAATGAAAGGACCCAATCAATTCATACTTTATT
AATTCATCGTTTTCGTCCTTTCGTAATTTTTTTTATTTATTCATCCAAGA
AGATTTCTGTCTGAACTTCACTTCTAGAACATCGAGAACCATTGCTAAGG
TATGTAGGGTATTTTTATTAATGACTTCTTTGAGTTTTGTTAACTACTCA
TAAATATTTTTGACAACGATTGAATTTAGTGGTTTCTTTGTTTTCGAGTG
GTATATTTTTTAAGGCCTCTGTTACTTTATTTTTCTTTTTTTATGTTATA
TTGTGCTCTCTTTAAAATTAAGAGGTTAATATTTTCTTGACTGATATTGA
GAAATTGCTTTTTTGTTTTCTCTAGAGATACCCTTCACAACAAAACTTTA
AAGATAATCAAAGATGACATTTTGTAAATTTCTTCTACTCGTGTTGAAAT
TTCCTTTGATTTTCGGTAAATATGAAACCCCTGATATGCCGTTCCTCCCC
TTCAAAATGGAAAGTCAAAACACGGCCATTTCCGGACCTTCACCGTGGTT
GATTCAAGAATTCACTTCCAAACACAAATGCTTCAAAACTTGTCTTCAAA
ACTTCACGCTTTGTGGGCATGTTCAATATAAAGAGATTTCTGCTAATCGT
TGGTTTTGTCAACTTTATGACGTCATTGAAAACCTGTTCGATTACTTGGT
GTCACAGATAGGTGAGACTTTGTATTCAGCGCAACACCAAGACCTTGACT
GCAGCGATTGGAAGGACAGAGGGTACACAATACCAGGAACTTATTGGATC
TTTCGCAACAGAACAAAGATGAGAACAGTTTGCAATACAGGAAATCCACC
TTGGACCCTCATCCAAAAGCGAACGAGTGCGTACGACTTCAACCGCTCGT
GGGAAGAATACAAAAATGGGTTTGGAGATCCGGAAACTAATTTTTGGATC
GGGAACGACAAAATCCACAAGTTGACGTACGGTCGAGAGATGCAAATCCG
TTTCACTGGTGAGCCCTATAGTAAGCCCAAGAAATTTTGCATTTACACCG
GTTTCTATATTGAGGGCGAAGAAAATAAATACCGCCTGCATACGGGTGCT
CATACAGGCGGTAGTGATACTTACGCCGGTGATTGGGCTCTTCACAATGG
TTCTCTTTTTTCGGTGCGCTCTCAAGATAATGATGGTTGGGCAAACCATA
ATTGTGCTGTTAGGTTCAAGTTAAATGGTTGGTGGCTGGGTATAGTAGAG
GATGGAACTCCTTACTGTGCTGAACTTGCATTCAATGGTGATTGGGACGG
ACAGAGCCCCGATACTGGACCCTTTTGGAAGTCTTTAGACGGATATAAGT
CCTTGAAGGCTACAACAATGGAAATTCGATTCAAAGAACTTTAACATGTT
CTTCCAATTGATAAATTGAGTAATTGGGCGAGACAAATTTAATTTTTTAA
TTTATTGTTCTACGGGAAAACCTTCAGAAAAATATTGGTTGGTCGGTATA
ATAGAAATAAGTTTTTCAAAATCTAGGTTTGGTAGGTCAAGTTCTAAAAC
TCTAGACTTTTCTTCTTACTCGATGAGTGGACTTTCGTGCTTTTCCATTG
TTCAAATTTCAATTCATCCAATTTCTGGGATGAATTTACACTTTTTCAAC
CTGTTCAGTTAAAAAAACTGCAAAAAACTTGTAAAGTCCATCCTTCAGCT
TTGCAAATTAATTATTATTATTTTTCTCGATATTTGAAAAAAAAACAGGG
TCGGTCGGGCCCGTAGAACAATGATTTATTTTGGCTCCGTATAAGATACT
TAGAAGTTTCATGCCATAATAAATGATGACGTTATTTAAAGGTTTTATTT
TTACATAAGTGTTCCCGTTTCATATCAGACACATATTTCATATCAGGACA
GTGACTGATTGTTATAATATGCTGATATAAGCGATAAATATTTTTCTTTT
CCCCTTTCTGACCAATCTTGCTCCGCACCCGTGTCAATCCAATGTGAAAA
AGCTTGTGAATTAAAATTGATGAATAAGCAAACGATATATAGATAGGCGC
TGTGATATAGTGGTCATTGACCTTGGTTGCTGCACGGGCGACTGAGGTTC
GATTCCCACTCGCAGCGGTTCACTTGCCGAATGAATGAACCTTCAACCCA
TGCCATGTGAGGGGAATTGGGTAGTCAGTCCAAGGGGCTGACGGGGCGCT
CATTGAAAGCGTCTATAGTTGCGAAAATAGGCCTCAAAGCCTCCTGCAAC
TCAACCAAATTGACAATAGAAATATCACTGTTATTTAAGCCACGATAAAC
TTTCAATATTCATAAATGAAAAGGTGTTGTGACGAGTGTGGGTATTTTGT
TGAGGTAGAAGGAAACAAACAAAAACCTCATGTTGAGAAAAGACTCTAAA
ATAATAATGAACATGGAATATATTAATTAAAAAAAAAACTTGCACCAAAT
TTTACTGAGCACTTTTAGACTAAATTCTGCGTATTGTAACCTTTTATTTA
TTATCCACGATTTTTAATTCTTAGATTAATTTAAACTATCCAGGAATATA
ATAATTTTGATCTTATTCGAAATATCTTAACAGTTTCACGGTTTGAACTA
CCTTATTGGGGGAAAAATGTTGTTGAGTTATGAGTTATTTAGTCGGGTTT
TTTTTCGTCGGGGAAAAATTTCGTCACCTAGAGGCATTTTCGTCACTTTC
CCCCGACCAAAATTTCAAATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057359-exon-scaffold_288-1575043694:372298..372615 | TCONS_00057359-exon-scaffold_288-1575043694:372298..372615 | Clytia hemisphaerica | exon |
| TCONS_00057359-exon-scaffold_288-1575043694:368643..370990 | TCONS_00057359-exon-scaffold_288-1575043694:368643..370990 | Clytia hemisphaerica | exon |
| TCONS_00057359-exon-scaffold_288-1510915933:372298..372615 | TCONS_00057359-exon-scaffold_288-1510915933:372298..372615 | Clytia hemisphaerica | exon |
| TCONS_00057359-exon-scaffold_288-1510915933:368643..370990 | TCONS_00057359-exon-scaffold_288-1510915933:368643..370990 | Clytia hemisphaerica | exon |
| TCONS_00057359-exon-scaffold_288-1491911889:372298..372615 | TCONS_00057359-exon-scaffold_288-1491911889:372298..372615 | Clytia hemisphaerica | exon |
| TCONS_00057359-exon-scaffold_288-1491911889:368643..370990 | TCONS_00057359-exon-scaffold_288-1491911889:368643..370990 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:368643..372615 - |
Blast
BLAST of TCONS_00057359 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 5.846e-22 Identity = 75/220 (34.09%), Postives = 104/220 (47.27%), Query Frame = 3
Query: 690 DCSDWKDRGYTIPGTYWIFRNRTKMRTVC---NTGNPPWTLIQKRT-SAYDFNRSWEEYKNGFGDPETNFWIGNDKIHKLTYGREMQIRFTGEPYSKPKKFCIYTGFYIEGEENKYRLHTGAHTGGSDTYAGD-WALHNGSLFSVRSQDNDGWANHNCAVRFKLNGWWLGIVEDGTPYCAELAFNGDW---DGQSPDTGPFWKSLDGYK-SLKATTMEIR 1322
+C D DRGY + G + I+ + TV +T WT+ Q+R + DF R W YK GFG FW+GND IH LT ++R + +F Y F + E KY+L GA GGS AG+ HN + FS + QDND ++ NCA +F+ WW C NG + +S G W + GYK S K + M++R
Sbjct: 117 NCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGS---AGNSLTGHNNNFFSTKDQDND-VSSSNCAEKFQ-GAWWYAD-------CHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVSEMKVR 324
The following BLAST results are available for this feature:
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