TCONS_00057360 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057360
Unique NameTCONS_00057360
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057360 ID=TCONS_00057360|Name=TCONS_00057360|organism=Clytia hemisphaerica|type=transcript|length=686bp
CGGGTCCTGTTTTTATTCTCGGAGGCGTCCTCCGTATTTCGGCCACGGCA
AGATAAACCatgtaaacaaaccaaaaaagaGGTGGGTTGAGGAGTTGACc
cctaaattttaaattttgacttttgatcCTAAAATTTTTGCATCCATACC
AATGTTTTGGTTGTAATATTATTCCAAGATGAAGGACTATGGAACTATAG
ACCCTAAGCCAGATAATGAAACTGGAATACAGCTATCAATCGATTTGTCA
GATCCATTTGgagagaaggatatttttgcCAATGAAGAATTTTGGAAAGA
GTGTCGTCAATCAATCAAAGCATGTGAAGGGCGTTTAAACAATGAGAAAT
GTCAGATGAAAACACGTGCACAATGGTTGCTAAggaaacatgtcaaagaa
gaaACGGATGTAGATTTAATTTATTATTTGTTGACAGTAGTTCACGACGA
ATATGCAGAATGTGCCTTGAAACGTCCTCAAGATGAGCTGCATTATCCAA
CATTCTTGTATGAGGTATGTTAGTTACTTGTCTGTAcgcagacccagtat
ctacagctgatttcaaaattcattgccgtagagctAGAGGGTCTGttatc
attgtcttttctcatttgagatgtTCAAACTGActgctgcgatggagtgt
tggcgagagaggggagacgataaGAGTTACTATTTA
Run BLAST on NCBI

transcript from alignment at scaffold_288:377110..383364-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057360 ID=TCONS_00057360|Name=TCONS_00057360|organism=Clytia hemisphaerica|type=transcript|length=6255bp|location=Sequence derived from alignment at scaffold_288:377110..383364- (Clytia hemisphaerica)
CGGGTCCTGTTTTTATTCTCGGAGGCGTCCTCCGTATTTCGGCCACGGCA
AGATAAACCATGTAAACAAACCAAAAAAGAGGTGGGTTGAGGAGTTGACC
CCTAAATTTTAAATTTTGACTTTTGATCCTAAAATTTTTGCATCCATACC
AATGTTTTGGTTGTAATATTATTCCAAGATGAAGGACTATGGAACTATAG
ACCCTAAGCCAGATAATGAAACTGGAATACAGCTATCAATCGATTTGTCA
GATCCATTTGGAGAGAAGGATATTTTTGCCAATGAAGAATTTTGGAAAGA
GGTTTGTCTTTTTTTGATATTTTAACTCATCATTGTTCCTCTTAAAAATA
CAGTTGAGGATTACGTTAACTTGGGAAAATCCTCAATCTTCCAATCCTTC
TTCTGATGTTAAGTGACCAGATTTCAGAGTGTGGCATGTTTGCTCGAGAT
CTCAACTCGGAAAAAGTTGAGTGGAGTGCAGGTCCAAAATTTGAGGTTTT
CCCAGGTGCAAGTGCAGACGGTTTTTTAACCCCAAGTGCAGAGTTCTGCT
ATTTTCTCCTCAAGTGCAGCTAATTTCAAATTTTAAGAATTTTTGGTAGG
TATATATCTAGATGCACCTTGTCCGGACCAAAATTTATCAGGTGCATTCT
TTCACAAAGTGCGGAACTTGGTATTTCCAAATTTTTCCTTGAGTGCGGCC
TCGCCATACTCTGCAAACTGGTTAAGTGAACTGACTGTTTTATGATTTAC
TCCGTCTAGACCTGTTGACATACAGTCTAAGAGCTTAAACTCCTAAACTA
GGCTATTCTTACCTCGTAATCCCTGAGTAAAGTTTATATTAAAATCTGTG
ATTACTTCTACGATTGCTTCCCGGCGCTCCTTCGCAGCTGTTTATCAAAT
TTCCACAAACGAAATTGCTGTATTTCACATGGCCCTTCTTTTTGGCACGT
CCTTGTCCTCTCACAGGAGGGCAGAGCTGTAAAATCTTACCCTTCATATA
TTTGTTTCATTCTGTGATCCTAAGGCTTAGGTTTTTTCTCATCTTCAAAT
TTCTGAAGAAAGCGGGAATTTATTGCGAGAGTTAGATTGTCAACAAAGTG
CCATAAAAAATCATTGAATAAAAGAAGAACTTGAAATCTTAAATATTTTT
ATTTTGAAGAATTGGTGCAAAAAAGTGAAAACAGTTTTATTTTTTGTTTG
TTCAATCGAAATAAGGGATTTGGAAAACTTTCTACAGTATGTTTGGTTTT
TTGCACAAACCCCTGTTATGGGCAAGCACCCCGTTACGAAGATGTTGGCT
TGAAATCGAAAGTAAAACCACTGAAAACAAAAGTAAAATTGGCCCGCACT
CCAAATCCCGTAATCTTGGTATAGGAGTTTTGGTCTGTACTGACATATTT
GAATTCCAAAAAACTATGTTCCTAAAAACTAGTTCCGAAAACAGAACTAC
TTTGCCTTGTTTTGGGATTGCTTTGGTCTTTTCAATTCAATTTTAGGGAA
AGAAAGATACTTTTTTAATCTTTATAACTTCTAAACCATCAAATATTTTT
CTAAGAAATGACAGACAGAATATGCACAGGATAATAGTCGTTCGGGAGAA
TGTGACAATCTTTTGAATAACCAATAACTCCAGCAGAAATTTTTTTAATG
ATAGCGTTATTGATTTGTCTTTCTCAACACAGCAGCTTTAAATCCTTTGG
GCTTAAAATATCAGATTTTTCAGGTTTTTATGACGTCATTGGACCCAAAA
TGCCCAAAATTTCACGTACTCATTTTTTAAACTTATTAAACACCCCCTCT
AGACCCTCCAAATCTCTTCTCCATAAAGTTTCCGATAAAATGGGTGGTTA
AACATCTTGTAACTCCTTTTCAATCTCGAGATATCGCATTTTTTCTGCTT
TGATGACGTCATCAACTGAAAATACCCAAAAATTCGATCTCCCAACTCCC
TTCAAACTCAAAATATTGCATTTTAAAGTTTTTCCAAAATCTGTGACGTC
ATTGGGTCCCTTTACCCCTGATGTTTTCAATGGTCAATTTGCAAATTTTG
GATTTTTTGTTGTCACCAGTTACCTTAATGCCCAAAGGGCCCCGAAAAAA
CAAAAAAATGTCAATTATTTCATATTGTCAAACGCTGGGCTATAGCATGA
CATGACAGTGATCAAAATAGCGGTCCGTTATCGGTTAAAACTGACCAGGA
AAAAAATCACCGACCCGAAAATATTTGGAAAATGGAGAAATACTGTAACC
AACCTTTTGTGACCTAAACTAATCTTGATGTTCGGTTGTTCATGGACTAT
CTACTTTATGACTCGCTCCTTAACTTTCTCCTCTTATTTGTTGGTTACTT
CGAACTATATTTCTCTGTTCTTTTCTAATTTCGTCGTTACATCGAACACT
ATTCCATCGTGACTTTTTATTCTCCTTTCTTTGTTACTTTAACTTATTCC
TTCGTAACTTTCTTCTCTAATTTCTTTGTTACTTCGAATTCTATTCCTTC
GTGACATTCTTCTCTAATTTCTTCGTTACTTCGAGCACTATTCCTTCCTA
ACGTTCCTAATTTCTTTTTTATTCTAAACCCTATAAAACTTTCTTCTTTT
CAAAATCTACACTTAACATGACTGATGCCAGTGCCGTAGTTACCAGGGGG
CTAGGGGGTGCTTAGCCCCCCCAATAATTTTTTAAGAGTGATTTTTTTCA
TAAGGTAAAGTATTTTACCTTTAAGATTTGCCTTTATTCGAATTATTTTA
GTTTTTTGAGTGTGTTTTTTGCCAATTTAGAGCTCTAGATTTCAAAATTT
TCCCACTCAGGCCAAACCATGGTTGGCCCTCACAGTGTCACTGAACTTTA
TGCCCCCCAATATCAAAATACTTCCCACAGCACTGGATCCACTTAAATAA
CCGATCAGAAAGAAAAACCTTATTTCGAACACTGCATGAATTTATTATAA
ATCCATTTAGTGTATAAAGATAGCTATGAAATACTATCACTGCAAAAAGA
ATTTAGGTCAAAATCTAAACTCATTTGGTAGGAGCTTACCTTTAAAAATC
TGTCATTTTTTTGACATAAAATTTTTTTTTGTTAGAAAAAGAGATTTTTG
AAGATGTCATTATGAATTTTGAAAAATGTGAAAAACTGAAAATTAATGTT
GCTTAAAAAGAACTCATTGAAAACTTCCATCTCTGAAAACTTCAAACATT
AGTTTACAGTATTAGTTATGGACTTGCATAATTGACCTCTGAAAGCATTT
TTCTTCCCAAAATTGGCTTAAAATAATTTTTATTTAATTGAACTTGATTC
AGGTAACTCTCATCCTTGTTGTTGCAAATACATCCTGTAGATGACTGTTT
TTTTTTGTGAAACCTTGATTTTCTAGTGTGCCTAACTGAATGAGATTATT
TAGCTTTTTCTTCATAAAACGTAGTATAACAAATGAAAAAATAAAGATTT
GCAATTATTTTGAATTATCTAGAAAGGCCTAAAATGTAGTAGTTTTTGCT
TTTAGTGAGAATCTGGACCCCCCTTCTTCAATTTTCACAAAATCAATATA
AAATCAAAATCTTTCTAGCTCACTTTTAATTGATATTTTTCTGAGCTATT
AGTTTTAACTGATTGCTTACAATTGCCATTTTCATGTTCCATAAGGCTAT
TTAATTGAAAATTTTAAGGACTCAGGATCTAAAAGCTCAAAAATGTTCCA
ATCAGGCTGAGAATAAAGCCTGGAAGCTTCTTAGCCCCTCCTAAATCAAA
AATCTAAGTGGAAGTAAAGTACTGAAATTGCCATTTTGGCACGAGCTTTA
AATTCTGGAAAACATTGAAATACCCAGAATTGTCAATATTTGGCGCTAAT
CGTAGATCCAAATTTACTAAAGAAGGGTGGTGATACAAGATTTAAAAAAC
CTGGTGTAAATAATGTTAACAAGGGTAAAGTTTTTTGAAGCTGTGAAATG
AATTTTTAGACAGTTGTTTAAGAATCCTCAATTTTGTTTTCAGTGTCGTC
AATCAATCAAAGCATGTGAAGGGCGTTTAAACAATGAGAAATGTCAGATG
AAAACACGTGCACAATGGTTGCTAAGGAAACATGTCAAAGAAGAAACGGA
TGTAGATTTAATTTATTATTTGTTGACAGTAGTTCACGACGAATATGCAG
AATGTGCCTTGAAACGTCCTCAAGATGAGCTGCATTATCCAACATTCTTG
TATGAGGTATGTTAGTTACTTGTCTGTACGCAGACCCAGTATCTACAGCT
GATTTCAAAATTCATTGCCGTAGAGCTAGAGGGTCTGTTATCATTGTCTT
TTCTCATTTGAGATGTTCAAACTGACTGCTGCGATGGAGTGTTGGCGAGA
GAGGGGAGACGATAAGAGTTACTATTTATANTAGAAAGGCCTAAAATGTA
GTAGTTTTTGCTTTTAGTGAGAATCTGGACCCCCCTTCTTCAATTTTCAC
AAAATCAATATAAAATCAAAATCTTTCTAGCTCACTTTTAATTGATATTT
TTCTGAGCTATTAGTTTTAACTGATTGCTTACAATTGCCATTTTCATGTT
CCATAAGGCTATTTAATTGAAAATTTTAAGGACTCAGGATCTAAAAGCTC
AAAAATGTTCCAATCAGGCTGAGAATAAAGCCTGGAAGCTTCTTAGCCCC
TCCTAAATCAAAAATCTAAGTGGAAGTAAAGTACTGAAATTGCCATTTTG
GCACGAGCTTTAAATTCTGGAAAACATTGAAATACCCAGAATTGTCAATA
TTTGGCGCTAATCGTAGATCCAAATTTACTAAAGAAGGGTGGTGATACAA
GATTTAAAAAACCTGGTGTAAATAATGTTAACAAGGGTAAAGTTTTTTGA
AGCTGTGAAATGAATTTTTAGACAGTTGTTTAAGAATCCTCAATTTTGTT
TTCAGTGTCGTCAATCAATCAAAGCATGTGAAGGGCGTTTAAACAATGAG
AAATGTCAGATGAAAACACGTGCACAATGGTTGCTAAGGAAACATGTCAA
AGAAGAAACGGATGTAGATTTAATTTATTATTTGTTGACAGTAGTTCACG
ACGAATATGCAGAATGTGCCTTGAAACGTCCTCAAGATGAGCTGCATTAT
CCAACATTCTTGTATGAGGTATGTTAGTTACTTGTCTGTACGCAGACCCA
GTATCTACAGCTGATTTCAAAATTCATTGCCGTAGAGCTAGAGGGTCTGT
TATCATTGTCTTTTCTCATTTGAGATGTTCAAACTGACTGCTGCGATGGA
GTGTTGGCGAGAGAGGGGAGACGATAAGAGTTACTATTTATATATCATAC
CTCATCGCAGAGATCTCCGTACGGGAATTTTTTTATCAAACAAACAATGC
GCACACAATGAACTACGCTACGATAAACGTGAGAGGGTTTCTAGATTTGC
GAGATGATGTGAAGATTTTTATAAGAACACAGGGCTCAATTTCGGCCAAC
ATTAAAGAACAAGTTGAGTACAATCCCAACTTCATAATTGAGAAATAGTT
AGAAAAAACTGAATTAAATTTTGTTTGTGAACAAGTAAGCATTTTAAGAA
CATCTTCAAGCCTGAATAATCAAGAGCAGCCTAGCCAGGCCTAGCTAGAG
AACAAATTTGATGATCTTCATAAAAAAGCGCCCCGAATGGTTTTGGAAAT
TAATTTATTTGTANGGCACGAGCTTTAAATTCTGGAAAACATTGAAATAC
CCAGAATTGTCAATATTTGGCGCTAATCGTAGATCCAAATTTACTAAAGA
AGGGTGGTGATACAAGATTTAAAAAACCTGGTGTAAATAATGTTAACAAG
GGTAAAGTTTTTTGAAGCTGTGAAATGAATTTTTAGACAGTTGTTTAAGA
ATCCTCAATTTTGTTTTCAGTGTCGTCAATCAATCAAAGCATGTGAAGGG
CGTTTAAACAATGAGAAATGTCAGATGAAAACACGTGCACAATGGTTGCT
AAGGAAACATGTCAAAGAAGAAACGGATGTAGATTTAATTTATTATTTGT
TGACAGTAGTTCACGACGAATATGCAGAATGTGCCTTGAAACGTCCTCAA
GATGAGCTGCATTATCCAACATTCTTGTATGAGGTATGTTAGTTACTTGT
CTGTACGCAGACCCAGTATCTACAGCTGATTTCAAAATTCATTGCCGTAG
AGCTAGAGGGTCTGTTATCATTGTCTTTTCTCATTTGAGATGTTCAAACT
GACTGCTGCGATGGAGTGTTGGCGAGAGAGGGGAGACGATAAGAGTTACT
ATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036145XLOC_036145Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057360-exon-scaffold_288-1575043694:383064..383364TCONS_00057360-exon-scaffold_288-1575043694:383064..383364Clytia hemisphaericaexon
TCONS_00057360-exon-scaffold_288-1575043694:377110..377494TCONS_00057360-exon-scaffold_288-1575043694:377110..377494Clytia hemisphaericaexon
TCONS_00057360-exon-scaffold_288-1510915933:383064..383364TCONS_00057360-exon-scaffold_288-1510915933:383064..383364Clytia hemisphaericaexon
TCONS_00057360-exon-scaffold_288-1510915933:377110..377494TCONS_00057360-exon-scaffold_288-1510915933:377110..377494Clytia hemisphaericaexon
TCONS_00057360-exon-scaffold_288-1491911889:383064..383364TCONS_00057360-exon-scaffold_288-1491911889:383064..383364Clytia hemisphaericaexon
TCONS_00057360-exon-scaffold_288-1491911889:377110..377494TCONS_00057360-exon-scaffold_288-1491911889:377110..377494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:377110..383364 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.9815	21.9482	6.91092	5.49352	1.0289	0.406524	0	0.459157	27.0032	23.0949	22.4165	25.6605	21.5654	22.9229	16.4629	19.527	19.4736	20.8404	11.7602	14.0036	14.0158	15.6518	13.5594	17.0993	0.409579	0	6.27704	3.80943	5.50439	6.47088
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top