TCONS_00057364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057364
Unique NameTCONS_00057364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2013

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057364 ID=TCONS_00057364|Name=TCONS_00057364|organism=Clytia hemisphaerica|type=transcript|length=2013bp
CAAAAAGACattatgtatactttattggtAGCAGGAATATTTTTAACGAC
TTTAACAACGGCTTATGAAGCCAATCGTAAATGTGAACCCAACAGGGCGG
CGCTTTGCAAAAACTTATACAACTCGACACGGTTTCCGAATTTCGTGAAA
CATCGGTCACAGGTAGATGCAATTATCGAATTAAACCAGTATAAACAACT
CATTGATATCGAGTGTGCGCCTCATTTGAGATTGTTTTTATGTTCAGTTT
TGATGCCAATGTGTACTATgcttgaagaaaatattttaccatGTAGATCG
CTCTGTGAAGAGTCAAAAGCTGGTTGCGAAACAGTTTTATTGAACTTTGT
GGGCTTACCGTGGCCTGATAGGTTGAAATGCGATCAGTTTCCTGTCAGTG
GTAGCGGACAAGTTTGCGTGGAGAACAAGAATGCTCAGCCTAACAAAAAA
ACGTGGGtggACCCCAACAAGCGAAGTAAAATGACTGAAAAAGAGAAAGC
CATTCTTATTTGTAGTAAAGGCCAAAAGATTCGGTTCCGTAAGATAGTcc
acgaaaataaaaattgcaaGCGTCACATCTCTCAAGAAGCGATACGTAAG
AAATGTGATGGGGAACATACTTGTGAGTTCACGCTCAAAGACCTCACCAA
TGAAAGAGGACAAGGGAAAGGTTGCAGACCCGGTAAAATTGGTTCAGCGA
GCATCAAGTACCAATGTTATAAAGACAAACCGCCAAAGCAGATCCATTTG
AAATATCGCCAAGATGCATTCCTTCTCTGCAAAAGCGCTAATCGAAGAAT
CAATATCTTGAAAGTTCAGTACCGCGACGAGAAAGCGGCCGACACCTGCA
TCACACCGAACGCCTTCTGTAGCGTAACACAATCNCGACGAGAAAGCGGC
TGACACCTGCATCACACCGAACGCCTTCTGTAGCGTAACACAATCATGTA
CTGGAAAACAGAATTGCGCTTTGTATTCCGATAACTCATTTATACCCAGT
CCCTGTAAAAATCTAAAACCGAAACTCATTGTTGATTATGAATGTGAAAA
AACATTACCTGATGAAAAAGTTGTTCAAGACTTTTGGGAAAACATCGAGT
TAAAATGTCCTGCGGGTAAACTGTTGAACATTGTGCGGGCTGAGTACATT
GGATCGTTATGCAGTAGTAAGAACATTCACTGTGCTGTCAATTTATATTG
TAAGAAGAAACAAAACTGTATTCTTAAAAATTCTGATCAGCGAGCTGTCC
AATGTAAAGACGAGCGGAGTAAAGTTAGTATCCGCTACGCGTGTACTTGA
AGAAAAGCCGTGTTTTCAGGTGATGATAGAAATAGAGTGTTTTTGCGAAG
CCCTTTCCGCtttaatgaaaaattctctTTGGAAAGTCGCGAAAACGTAT
TAAAATTTGGGATTAATGCAACAATGAATGACTCAATGATGGTGATGATG
ACTCAATGATGGTCAGGTTGGTTTGACGTCGCATTGATGGAAAAGTGATA
TTTCTTTCCAAAAGACTTTCTGTTGCAAGATGGATACAGAATTTGATGTT
ATTGTTTCAGTGAATTTTATCTTGATAAAcgataattttacgataatttc
tAGATTTTATAAATATCTCTAGATATATAGCAGACTGAAGCAAATTTTCC
GTCAATTCCTAATAGATTCGAGACTGTTAGCAGGTCTGtctttagtctga
atcgcagacctctacaaaaccccaggtagtataaggagcacgaatccgtt
agtggatgccagcagcctagtcTGTCTTAGAAAAGGGGCGcatttttaag
acaaaaatgttttgcttttttcacattttgattTACTTGATGAAGAAAGA
CCCAGGgacgattttttttatttttttaataaaatatccaaatgacattt
tttgtttaaaattgtaaatttttaagaattaattaattttttttattttc
atacattttgtttttttttcttcggaatgtaaaaagatagTAAAGTTAGT
GACGTAGTTAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_288:400884..406648-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057364 ID=TCONS_00057364|Name=TCONS_00057364|organism=Clytia hemisphaerica|type=transcript|length=5765bp|location=Sequence derived from alignment at scaffold_288:400884..406648- (Clytia hemisphaerica)
CAAAAAGACATTATGTATACTTTATTGGTAGCAGGAATATTTTTAACGAC
TTTAACAACGGCTTATGAAGCCAATCGTAAATGTGAACCCAACAGGGCGG
CGCTTTGCAAAAACTTATACAACTCGACACGGTTTCCGAATTTCGTGAAA
CATCGGTCACAGGTAGATGCAATTATCGAATTAAACCAGTATAAACAACT
CATTGATATCGAGTGTGCGCCTCATTTGAGATTGTTTTTATGTTCAGTTT
TGATGCCAATGTGTACTATGCTTGAAGAAAATATTTTACCATGTAGATCG
CTCTGTGAAGAGTCAAAAGCTGGTTGCGAAACAGTTTTATTGAACTTTGT
GGGCTTACCGTGGCCTGATAGGTTGAAATGCGATCAGTTTCCTGTCAGTG
GTAGCGGACAAGTTTGCGTGGAGAACAAGAATGCTCAGCCTAACAAAAAA
ACGTGGGGTAAGAATCAATTTTTCGTTTCCCAACTGATATGTTACGTCAA
GACAACGTTCATTTAACGCCTATAGGCTATTTCAAAGTCGCAAAGCGTAA
TGGGAAATCAGTACCTCTGCGCGCTAATGACGACTTTTGGTCCAAAGTTT
TGAAAATTCTCAAAGATTGTTGCATCTAGCCAACTGGAAGTCGTTACTAG
AGTGCAACCAGTCCTGATTACCCATGATTCATTTTGATTGTGAAATGCCC
TAAACACCTGTCATCTCCTGAAAGTTTTTCGTCCATATTAGTGCCATGAA
CCTATAAATTTCAATAAGTATACACATGTTATTCTTAATTTTTACAACAA
TGCACCAATAACGCTCGAATCACGTTCGATGGGCATTGTAACAACTTCTC
CTAATTCTGTCAATAGAGAGCGTACTTGGTAAAATGATGGAAGATATCTC
CATTTTTAATCATGAGAACAACAACGATACATAGCAACTTCCGTACATGC
TCCACTTCTGTCTACATTCCTGAACTTTGCTACTAACGATTTCCTGGTGG
TACCGCCCTTTGCGTCTCTACCCCGCCTCTTTCCTTGCTGAGCGAATTAG
TGACCGACATACCTTCCTAGATAGCTTATGGCTCATTGAAAACGGATCTT
CTCTTAATTCCTAATTTAGATTTTTCTGAAAAATTCAATTTATTAATTTA
TATCCTTCCCGAAAAATGCGCATGCCATGATTTACGCGAAGTTGAACTCC
GGACGCGTAGGCGTGGATTGAAATTCAAAAATTACGGAAACGAAAATTAT
GAAAAACTAAATTAAGCCATTTTATTTATAGCCAAAATAAATGGCAATGG
AAAATAGTTAAGTGTCTCCAAATAATCTTTGTTTTTATTGGCTTTTGGTT
TTTCTCTTGACGCCTTCGTAGAAGTGTGACTACTTTTACTATAGCAATGC
AGCTCAACTCTAAACCGTTTCAGCAGGCTAAACATTAGACTGTATGACAG
TCGTTTTTTCTTACTCACATATCGGGAAAATTAAGTCGAAACAGGATGAT
ACAGAAAAGTCTCCATGACTCAAACGCGCACAGGGAACACAAATTTGTTC
GAGTTAAGGTCTAAGGAGACTTAAGGTTTAATAAGGAACTATTAACTGAA
GGGACAGTTAAAATTGTTCCAATTAAGGAGACATTCAAGTTATAGAGATT
CGAGTTAAAGAGACTCTACTTCTATAATAATCGGGAAAAACCGCGAGATT
AGCTTGGAAATAACGTATAGTGATTGTATAAGTGTAAGGAGATAATTGGC
TGCAGCGTTATAGGCGGCTATATTTAACTATTCTTAACACCGTTTTAAAA
GTTCGTAAGGTTTCGAGATAAGGGATATAAATTGAGTGAATGTTTTGCGT
AGAATTTTTGGCTGTGATTGTTTACACTGTCGATGATACAGTGGTCAATC
TGGGGTTTTAATGCATTTACAAAAACAAACTTTTCTTTAGAGTATTGACG
TATTTGAAGTTCAACTTTGAAGTAGGTCATCGTTGAATAATCACTCAACA
CTCAACTTCCTGACTTGAGAACTCTATCCATTTGTTTGTTGCGCTCTCGG
GGATTGAGGAAGAATTCTCCTTTCAATGTTAACTTTTTTGTTCCTATATG
TTTGCATTTTTATGACTTTGATAGAACTCACGAATAATTTCTCTAGGAAA
TTTCTTAGGATTAGCACAACAAAATATTCACAAAATAGTGAGAAAAAAAA
ACGTTTTTAGAACATTTTAGGCTTACGACTCAAATACTTAAGAATATCGA
AAGGCTTTAAAACGCAGGTACCCTTGAACCGTCTTCACTCGTTTTTAGCC
TGTAGTCATAAAATAAAATTGATATCCAGTCTGCTTTTTTGAAAGGTGTC
AAAAAGAGGCTTTTGCAATTCACACCTTCTAAAACGGTTCCTCCCTCCTC
AATATTATGAGATTGGATGGCAATTAACAGTTTTAATTAATCACTTAACT
CCAGCCCCTATTTGTCGAGATGTCTGTTATTTATGACGTCTTCATAACAA
TTAAGAGATCTGTAAATATTGTGTCCGGACTGTCTGACGCGTTTTTGTAC
ATCCCTCCCCTTTTCTTCGCTGGAATTTCGAGCTATCATTTCTATTTTCT
TTTTAGTGGACCCCAACAAGCGAAGTAAAATGACTGAAAAAGAGAAAGCC
ATTCTTATTTGTAGTAAAGGCCAAAAGATTCGGTTCCGTAAGATAGTCCA
CGAAAATAAAAATTGCAAGCGTCACATCTCTCAAGAAGCGATACGTAAGA
AATGTGATGGGGAACATACTTGTGAGTTCACGCTCAAAGACCTCACCAAT
GAAAGAGGACAAGGGAAAGGTTNTGGCAAATTCTTGATATTATGTAAAAT
TATAATCAAACTTCTGCTCACCATCCAAAACAAACATTATCGAGCTATCA
TTTCTATTTTCTTTTTAGTGGACCCCAACAAGCGAAGCAAAATGACTGAA
AAAGAGAAAGCCATTCTTATTTGTAGTAAAGGCCAAAAGATTCGGTTCCG
TAAGATAGTGCACGAAAATAAAAATTGCAAGCGTCACATCTCTCAAGAAG
CGATACGTAAGAAATGTGATGGGGAACATACTTGTGAGTTCACGCTCAAA
GACCTCACCAATGAAAGAGGACAAGGGAAAGGTTGCAGACCCGGTAAAAT
TGGTTCAGCGAGCATCAAGTACCAATGTTATAAAGGTAAGCGAGACAGAG
TTTGTTTTTTTGTATTGACTTGATTCCTAGGTGGAGAGGCCGCCTTTAAG
GTTAAGTCTTTCAGGCTTCAAAAGTGCACTGTAAGGGTCAATATTAGAGA
AAGTGCACTCGAAGGGTGTAAAAATTGAGTAAAAACTATTAGCTGTGAAA
TTCTGGAAAAACGGACCTTTTGTTGCCTTCTAATGGAAAAAAACCTTCGA
GAAAATGCATCGCGAGGGTCGATTTTCAAAATTTGGCTTAATTTAAGAGC
TCTAAGGGCTAGACGTGATTTCTAAATCGCCTTCACTTTTAAGACATTTT
GTCTGGTATTTGAACCAATATGCAAGCAGCTACTTATCGATCATAAAAAC
AAACTTTAGGAAGAAAAAATCTTCTCACGTTACCATTTGCGTTCAAAAAT
TATTATTGACTCAATCTAACGTTACTTTAAACCTATATTACAGAATTGCA
CACGCCATTATAGATTTTATCTTTTTGTAAAAGAAACCTTTCTATTCTCA
AACTAGAAATTCAAGAAGATTTCGATGGTTTTGTGACGAACTCCAATAGA
CGATATCGGCTTTCCGAATTCTCCCCGAATGATTACCCATGATGCATTGC
GCAAAAAAATTCACGGACAATATTGACTTACTGAATTTGTTTGCGCAATG
CATCATGGGTAATCATTCGGGAGAATTTCGTTAAGCCGATATCGTCTATT
GATATAATATCCTTTATCCTTATAGGAATCTAAACTTATTCATGATATTT
ACGACGCAATGTTTTTCTACAGAAACACCCCTGTTTTGACAGTGGCGGAA
ATTTATGCTAGAGAAAATTTGTTTAAAATTGTCATTACTGGAAAAAACCG
GGGTGTTTCTGTAGAAAACATCATTGAATGAATATCATAAACTAAGTGGT
TTTTAAGGCCTAAAACGTTTATAATTTTCACTAAATTATCAAATTGTTGT
CAATCTCTTCTAGACAAACCGCCAAAGCAGATCCATTTGAAATATCGCCA
AGATGCATTCCTTCTCTGCAAAAGCGCTAATCGAAGAATCAATATCTTGA
AAGTTCAGTACCGCGACGAGAAAGCGGCCGACACCTGCATCACACCGAAC
GCCTTCTGTAGCGTAACACAATCNCGACGAGAAAGCGGCTGACACCTGCA
TCACACCGAACGCCTTCTGTAGCGTAACACAATCATGTACTGGAAAACAG
AATTGCGCTTTGTATTCCGATAACTCATTTATACCCAGTCCCTGTAAAAA
TCTAAAACCGAAACTCATTGTTGATTATGAATGTGAAAAAACATTACCTG
GTAAGCTTTTTCTCTTTCATCCCTGGGGACGAATACTTAAATTCGTAGGG
TCAGCCTCGTTCTCATTTCTGATTGACACTTCTGATAAGGCAATTATTTA
CGGCTATGTTTGACATTTGGAAGGTGGGTGGAACTGCTTCACTTTTACTT
TGAGTTCTGTAACTCACTTGAGTAATGCACTTGGAACAATGTTAGAATGG
TATGGGGACTACTCAAATATATTCTTCACTGAAATGGATTTAGATTATTA
AGTACCTTTGAAAAATTCGGGTAAAAATTTATAATATTTTCTCTTTGTTG
TCTTTTCTTATAGATGAAAAAGTTGTTCAAGACTTTTGGGAAAACATCGA
GTTAAAATGTCCTGCGGGTAAACTGTTGAACATTGTGCGGGCTGAGTACA
TTGGATCGTTATGCAGTAGTAAGAACATTCACTGTGCTGTCAATTTATAT
TGTAAGAAGAAACAAAACTGTATTCTTAAAAATTCTGATCAGCGAGCTGT
CCAATGTAAAGACGAGCGGAGTAAAGTTAGTATCCGCTACGCGTGTACTT
GAAGAAAAGCCGTGTTTTCAGGTGATGATAGAAATAGAGTGTTTTTGCGA
AGCCCTTTCCGCTTTAATGAAAAATTCTCTTTGGAAAGTCGCGAAAACGT
ATTAAAATTTGGGATTAATGCAACAATGAATGACTCAATGATGGTGATGA
TGACTCAATGATGGTCAGGTTGGTTTGACGTCGCATTGATGGAAAAGTGA
TATTTCTTTCCAAAAGACTTTCTGTTGCAAGATGGATACAGAATTTGATG
TTATTGTTTCAGTGAATTTTATCTTGATAAACGATAATTTTACGATAATT
TCTAGATTTTATAAATATCTCTAGATATATAGCAGACTGAAGCAAATTTT
CCGTCAATTCCTAATAGATTCGAGACTGTTAGCAGGTCTGTCTTTAGTCT
GAATCGCAGACCTCTACAAAACCCCAGGTAGTATAAGGAGCACGAATCCG
TTAGTGGATGCCAGCAGCCTAGTCTGTCTTAGAAAAGGGGCGCATTTTTA
AGACAAAAATGTTTTGCTTTTTTCACATTTTGATTTACTTGATGAAGAAA
GACCCAGGGACGATTTTTTTTATTTTTTTAATAAAATATCCAAATGACAT
TTTTTGTTTAAAATTGTAAATTTTTAAGAATTAATTAATTTTTTTTATTT
TCATACATTTTGTTTTTTTTTCTTCGGAATGTAAAAAGATAGTAAAGTTA
GTGACGTAGTTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036146XLOC_036146Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057364-exon-scaffold_288-1575043694:406192..406648TCONS_00057364-exon-scaffold_288-1575043694:406192..406648Clytia hemisphaericaexon
TCONS_00057364-exon-scaffold_288-1575043694:403830..404042TCONS_00057364-exon-scaffold_288-1575043694:403830..404042Clytia hemisphaericaexon
TCONS_00057364-exon-scaffold_288-1575043694:403464..403517TCONS_00057364-exon-scaffold_288-1575043694:403464..403517Clytia hemisphaericaexon
TCONS_00057364-exon-scaffold_288-1575043694:402149..402485TCONS_00057364-exon-scaffold_288-1575043694:402149..402485Clytia hemisphaericaexon
TCONS_00057364-exon-scaffold_288-1575043694:400884..401835TCONS_00057364-exon-scaffold_288-1575043694:400884..401835Clytia hemisphaericaexon
TCONS_00057364-exon-scaffold_288-1510915933:406192..406648TCONS_00057364-exon-scaffold_288-1510915933:406192..406648Clytia hemisphaericaexon
TCONS_00057364-exon-scaffold_288-1510915933:403830..404042TCONS_00057364-exon-scaffold_288-1510915933:403830..404042Clytia hemisphaericaexon
TCONS_00057364-exon-scaffold_288-1510915933:403464..403517TCONS_00057364-exon-scaffold_288-1510915933:403464..403517Clytia hemisphaericaexon
TCONS_00057364-exon-scaffold_288-1510915933:402149..402485TCONS_00057364-exon-scaffold_288-1510915933:402149..402485Clytia hemisphaericaexon
TCONS_00057364-exon-scaffold_288-1510915933:400884..401835TCONS_00057364-exon-scaffold_288-1510915933:400884..401835Clytia hemisphaericaexon
TCONS_00057364-exon-scaffold_288-1491911889:406192..406648TCONS_00057364-exon-scaffold_288-1491911889:406192..406648Clytia hemisphaericaexon
TCONS_00057364-exon-scaffold_288-1491911889:403830..404042TCONS_00057364-exon-scaffold_288-1491911889:403830..404042Clytia hemisphaericaexon
TCONS_00057364-exon-scaffold_288-1491911889:403464..403517TCONS_00057364-exon-scaffold_288-1491911889:403464..403517Clytia hemisphaericaexon
TCONS_00057364-exon-scaffold_288-1491911889:402149..402485TCONS_00057364-exon-scaffold_288-1491911889:402149..402485Clytia hemisphaericaexon
TCONS_00057364-exon-scaffold_288-1491911889:400884..401835TCONS_00057364-exon-scaffold_288-1491911889:400884..401835Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:400884..406648 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.179196	0	0	0	0	0	0	0	6.19348e-06	3.48419e-08	0	0	0	0	0	0	0	0	0.382487	4.14299e-09	0	0	0	0	2.69935e-08	0	1.52026e-09	3.62933e-09
Blast
[Close]
BLAST of TCONS_00057364 vs. Swiss-Prot (Human)
Match: FZD7 (Frizzled-7 OS=Homo sapiens GN=FZD7 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 4.443e-30
Identity = 54/119 (45.38%), Postives = 82/119 (68.91%), Query Frame = 1 
Query:   82 CEPNRAALCKNL-YNSTRFPNFVKHRSQVDAIIELNQYKQLIDIECAPHLRLFLCSVLMPMCTMLEENILPCRSLCEESKAGCETVLLNFVGLPWPDRLKCDQFPVSGSGQVCVENKNA 435
            C+P    LC ++ YN T  PN + H +Q DA +E++Q+  L+ ++C+P LR FLCS+  P+CT+L++ I PCRSLCE ++ GCE  L+N  G  WP+RL+C+ FPV G+G++CV    +
Sbjct:   49 CQPISIPLCTDIAYNQTILPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELRFFLCSMYAPVCTVLDQAIPPCRSLCERARQGCEA-LMNKFGFQWPERLRCENFPVHGAGEICVGQNTS 166
The following BLAST results are available for this feature:
BLAST of TCONS_00057364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FZD74.443e-3045.38Frizzled-7 OS=Homo sapiens GN=FZD7 PE=1 SV=2[more]
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