Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057478 ID=TCONS_00057478|Name=TCONS_00057478|organism=Clytia hemisphaerica|type=transcript|length=312bp TCAATCTTAAGTAAAAGATTTCTCGGAAAAAGTCAGCAGGATAACGCTAG ACAACTAAAAGTAGATTGTGTCGGGGTAGTGTTTGTAACACACTGTGACA AGTGGTTCGAATGAAATAGAAGTAGAAGCTGTGAAGATAATGCCAGCAAT ACTACTGAGGagaccaatatggacactgattTTGTACCGCTCATAAGTTC GTATTTAAAGTCAGAAGAATTCGATCCTTGTTCTTTTCAGCAGCAGTTGA ATCTTCCAAATGCCGGTGGGTATAATAACAGCACCACCAGTGGTGGTGGC GGTGGTGGTGNA Run BLAST on NCBI transcript from alignment at scaffold_289:301440..305856- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057478 ID=TCONS_00057478|Name=TCONS_00057478|organism=Clytia hemisphaerica|type=transcript|length=4417bp|location=Sequence derived from alignment at scaffold_289:301440..305856- (Clytia hemisphaerica) TCAATCTTAAGTAAAAGATTTCTCGGAAAAAGTCAGCAGGATAACGCTAG
ACAACTAAAAGTAGATTGTGTCGGGGTAGTGTTTGTAACACACTGTGACA
AGTGGTTCGAATGAAATAGAAGTAGAAGCTGTGTAAGTCGTTATTCTTAA
TATGCGTAAGTCATTTTTCTAGCGGAAACACCCGAAAAAAGCCGGGATTT
GACCTCTCTCTGTTACTAAAAATAGAAACACAGAGGTAAAAAACTGGCTT
TTTTGGGTGCTCCCGTTAAAAAATATGACGTCATCTTGACTTACGAATAT
CAAGAATTGTATTATTGTTAACCGGTTACTTTTTTGAAGCGGGCTATGGC
TTTTTGCGCAATGCAATTAGTTTTTTTGCATGACGACGGGCCTACACTTC
GCAGAGTTGCCCGTTGCTAGAAAAATTCAAATGAAAATGAACCTCTGCGT
TGACATCATTTGCCTCATTTTTTTAAAAACAATTTTTGATCTCTTTTTGC
TTGTTTTTTTCTCGCTTTTTCCTCTATTTTTTCTGGATAAAGCGCGAAAA
ATCAATCGAAGCTGAAGGATATGGTTATCTAATACAATAATGGCCGTTTT
TTCTGGCTGTACTGTGAAATAATTGCTCTCGATCAACGTAACAACTTCAC
AAGCTCGGTTGTTACAATATTTCTCAGTACAGTTCGTCTCGCTCACCGGT
CATTATTGCATTTGAGTATTTTAGTAATAGAAGATGACGGCATCCACCAG
GTCCAGTAGCCTATATATATATTTTACACTTTGCAAAATTTTACAATCGC
ACTTTTGATTAGCAACTCGCACTTTAAAACTTTAACTCGTACTTTTGCAC
GCAGTCAACCTCGTCCCCATCATGTATCCTCAAGGATTTATTTACGTTAC
TACTGATGATGGACGCGCTAGAGAATATATCAGGCGCTTTTACCTTCATG
AAATCTACGATCGATTCTAAGAGCCTTTTAAAAGATTACAATTATGAATC
TTTTTCACTAAAAAATGGCTTTCCCTCAATTTTTCGTGGATGTTATATTG
GCGACGGGTGGGACATGGGCGCAGAGTACTTTTTAACGCTCTATGTTGTA
AAGAGGTCTGGGACCTCAAGGAAATTCCCCGAATTCGGAGGCGCATGCGC
AAAAGCAAAGAAGGAAGTCATAATTAAGCGGGAGAAAATGAAAGTAGATT
ATTCATCATTTTTTTTATCAAGCCAGTGGCAAAGGAATTTCTTTTCATTA
TATATAATTAGTTTTGTATGATTCTTTGTGGCATATAATGGCTCATTAAT
CTCGTCATGATGAAATGCCGTCCTCGCAAAAAAGTGAATGTTTTGTTTTG
TTTCAAAATAAACATTTTACGTGATACGTGATTGAAGACACGATTCGTGA
CCGAATATCGAGAAAGTCAGAGAAATCAAACCTTAAATGTTAAATCAATA
TATAACTTTATAGATTGGTGATTGGATTGGGTCAGTAGATAGATAGACTA
AATTTTATCATTCTTTTTTTTCTGATACAGAGTGAACAGTATACCTACAT
TCGGTAGGGGGGGGGGTACTGGGGTTGTGCTTGAGCTGGCGGTGCAGTGT
GCCACCTGACTCTCAACCCTCTCACCTTGGGATTGCGATATTGGGACTAA
TTTGACCAATTTCTATCTTTCAGGGCAAAAAGTGGAAGTTTTCCTATTTT
TCCGACCTGGGACTGGGTGGTTGAGAAGTTTGATTTTCATCCATCCATAG
ACCTTCTGTCCTGTATATAATTCTGAAATGCCATGTCTAATTCCGCCTCC
GGCATCATAGCAGCTATATGGTCCAAATAAAATAAAACCTTCTGAATATA
AGTTGTTTAAAAAAATCACTCTATTACTTGAGCCACTTTGCAGATCGGAT
AGTTGCTATGTTGGAATTAGACAAGGTATGTCAGCATTACAAAAAGTTAC
CGTACTAACTGGTTATAATTATAATGGATGACATTCGTGCATTCATACTC
GCCCATACTTCTGCCACAGCAAATGTCTTGATGTTTAGGGTGATGTTGAT
AAACCATTAGATGACGGTAGAAAATGGGCTTTATGAGCTTTTCAGCAGAC
ATATTAAGGATGATGTCCAATAACTCATTCTGTCCAGGGAAAATCAACTT
AACGTTACTTTTTATGTTTATCTGTACATGTCTCCATCAACTCGCGATTA
AATATTCACTGAAGTGGAAACCCTCAAACATTGAGCGTGAAGCTCAAGCA
TTTCAACATGTTTCATGCAACTTTTGAACAGTTCGTTGTTGGATTTTTGG
GAAAAGTTTCCCTGATTTTCCTGTTTTTTCCAGAAAATTTTCTGGATTTT
CTGATTTTCAGAGAAAATTTTTCCCCTGCTTTTCCAATTTTGGGAAAAGG
TTTCACGGATCTGCTGATATTTTCTACCAAAGGTCCTGGGGAGTTGAAAA
ATGAGCTTTCAGAAAGTTAAGTTGACCTAAGTCAACAGAAGATTCTTTTA
AATAAACTATTAACCAGCATCTTTTTATTTTCAAATAATATATAAAGAGC
AGTTTAAAATTCTGGGAAGAAGTCTTGCTTATGCTATATATAAATTGAAA
TTTCAATTAGATTTTTTATGTTACTTAAATTTCAACAGAAAGAAAAGGAT
GCAGAGAAGGGACCTGAGATTGTTTCCATAATTAATTGTGACATTTTAAA
AATGAAGCGTAAACCCAGTTTTCTTTTCAAAAGTACAAGTATATACCTAC
TCTGCAACATGTCTGAAAAGGAAAAATAGTTTGCTGGCTAAAAAAATAAA
TTTTTGTGGAACAAGTTTTTGCAGAATTTCATTTCACGGTTTTTTGAAAA
ATCAGCAAAATTAAATTCCGTGAAACACAAATATTGTCAGGATTTCAAAA
ATCACCCCTAAAATTTGTCTTTTCAGCAAAAAATAGGATTAAAAATTAAA
AATTCCGCAAAACTTCTGAATTTAGATTTTTGGTTATTCACAAATTTAAA
GCTCATAAATTACAATAGAGGTGTGATTCTTCACACAAAAATTTCTTCCC
TTAACTCTTCGATCATCTTGTGCAGGGAAACAAATTTTTAACTAACTTTT
TAACTTTTGAAACATTTATCCAATTGACTTGAAATTTAGCAAGTGTGTAC
CAAATATGAAATGGCATCTTTGATGAAAATTTTGGCATATCATTGATGAC
GTCATCATTTTTTGAAAATAATTAAAATCGGAACCCCATTTAACCTAGTA
ACTTGAATTTTTTTCGCTCAAATTTTTTGAGGCAACTCCAGGTGACATAA
ATTTTTTTTTAATTGCAAAATTTCGCATTTTAATTATTTCTGCTGACATC
AGCAAAATTAAAAAAAAAATTTATGCAGAAATGTTTCTATTAAAGATATG
CAGATTTGGATTTCATATTTATACCATCAGCCAAACTTGAGTTATTAAAA
AAACAAGTTTTGCTGACGTCATCATTTTTTGGTTTTTGCCTAATAACTTT
TTTGGGTGAAAAAATTAATTTTATTAACAGTGATTTCTGAATTCTACATC
GTAATACGCTTCTTTAAAGGTATAAATGAATATGTCTAAGGCCCCCAATT
TTCTGCGCCAAACTTATGGCTTTTGGGACATGCCATAAGTTACCAGAGGT
GTAATTTACAGACTGGTCTGCAAAGTATCAAATACTCATGGGAACGAATT
TTTTCTGTTACTAGTCTCTTTTATTTGACAAAACAGCCTTCAGGAACAGA
TTTCAGTCAAATTGAACAAGTCAATTAAATGATTTTGGTCAAGTTTTGCA
AATCAACTTCAGTTATCCATATCTACTGGTCAAAATTTCAAGGTCATAGC
AGTTGTCAATCTTGAGATTTTAAGGGGGAGCTCGAGCCCCCCCCCAAAAA
TGCTTTCCCTCCAATTAAAAAAATAGGAAGATGCTTGAAGGGTTAAGGTA
TCCCTCAAATACCTCAAATGCTTGCACACATTTTGTTACTTTTTTTCCGA
AACCTAAACTTCCATAAAAATTTGATTCAAAACTTACTCAAAAACATTTT
TAGGGAAATGGTGTGACGCTTATTGATTATCTTACCAAGCAACACCCAAT
AATAAAGTTTTATTGAATCTCAACAAATTTTTGGATGTTTACATTTTTAA
TTTTAACTTTAGCACGATAAAATGATACTGAAGGACACTACTGGCTGCTG
AGTCATGAAATATTTGCATTTGTGATTAATTCTTTAGGAAGATAATGCCA
GCAATACTACTGAGGAGACCAATATGGACACTGATTTTGTACCGCTCATA
AGTTCGTATTTAAAGTCAGAAGAATTCGATCCTTGTTCTTTTCAGCAGCA
GTTGAATCTTCCAAATGCCGGTGGGTATAATAACAGCACCACCAGTGGTG
GTGGCGGTGGTGGTGNA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057478-exon-scaffold_289-1575043694:305725..305856 | TCONS_00057478-exon-scaffold_289-1575043694:305725..305856 | Clytia hemisphaerica | exon |
TCONS_00057478-exon-scaffold_289-1575043694:301440..301619 | TCONS_00057478-exon-scaffold_289-1575043694:301440..301619 | Clytia hemisphaerica | exon |
TCONS_00057478-exon-scaffold_289-1510915933:305725..305856 | TCONS_00057478-exon-scaffold_289-1510915933:305725..305856 | Clytia hemisphaerica | exon |
TCONS_00057478-exon-scaffold_289-1510915933:301440..301619 | TCONS_00057478-exon-scaffold_289-1510915933:301440..301619 | Clytia hemisphaerica | exon |
TCONS_00057478-exon-scaffold_289-1491911889:305725..305856 | TCONS_00057478-exon-scaffold_289-1491911889:305725..305856 | Clytia hemisphaerica | exon |
TCONS_00057478-exon-scaffold_289-1491911889:301440..301619 | TCONS_00057478-exon-scaffold_289-1491911889:301440..301619 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_289 | supercontig | scaffold_289:301440..305856 - |
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 ( blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match Name | E-value | Identity | Description | |
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