TCONS_00057496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057496
Unique NameTCONS_00057496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length945

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057496 ID=TCONS_00057496|Name=TCONS_00057496|organism=Clytia hemisphaerica|type=transcript|length=945bp
CTGTACTTCGTTTGGTGATCTAGCCAAACTACACACGCTAAGCAATCACC
TTTTCCACAAGACATGTCTTTATCCTTGTCAATTCTTTTGGCATTGAAAA
TCCTAGTTTCGAGCCTGTCATCACTCGTGCTAGTGTCTTTTTGCTTTACA
TCTCTCAGATGAAGTTTATGACTTTCACACATCTCACACTCATCATCTCC
AAGCTTTGCAAACGATATGTTTTGACTTTTCACAATTCGAGTATACTGAA
CATATGACATGGTATTCTCATTGTTTTCTTTCCTTTGATCAAGATAATCC
TCGTACATTTCTTGAATGGTCAGCTCTGATGGAAGATATAACCGATTTGG
GGCATGCTCTCGCCGATAATGAGAAATTTGAGGATTGAATGACATAACAT
GTTGAATGGCAGTCTGTTTTCCAGAATCTGACATTGCATGCTTTGGCGGA
TGTTTACCCCTTTTATCTTGTAAAGTCACTCCAAAATTTGAGGTTGTACT
CAACGCGGTTGAAATGAATTTGTCGAAACGGTATCCCAAGGTGGAAATGA
ACATATCTTTgcaaacaaatttttgttctcCAGAGGCATCCGGAAACCCA
ATACTTTCGTGCTCTTCTTTTGTTTGAGTCAGCATATCTTCTGGCTGGTT
CCATTGTAACAATGTGATTGTAAATCCATACTTTTTGATGGTTATAGTCA
AGGTCCCAAAAGTGCAATTTAACTCGTTTGTCTTCTGAGAATTTCGAGCA
GTCCAATTTGCAGTTGCAACGAGATTGGATAAGTTTGTGCTTTTCAActt
gtttgttctttttgttaCTTGGTTCATCGTTGTTTTCTAGAAATAACAAG
AAGCCTGTTGgcttgaaggcccagcgaaaagtaacgtgttgaaaacgagc
gtgcaaaacagcaaatgtatgaccctgttgacatggatcaaagtg
Run BLAST on NCBI

protein sequence of TCONS_00057496-protein

>TCONS_00057496-protein ID=TCONS_00057496-protein|Name=TCONS_00057496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MNQVTKRTNKLKSTNLSNLVATANWTARNSQKTNELNCTFGTLTITIKKY
GFTITLLQWNQPEDMLTQTKEEHESIGFPDASGEQKFVCKDMFISTLGYR
FDKFISTALSTTSNFGVTLQDKRGKHPPKHAMSDSGKQTAIQHVMSFNPQ
ISHYRREHAPNRLYLPSELTIQEMYEDYLDQRKENNENTMSYVQYTRIVK
SQNISFAKLGDDECEMCESHKLHLRDVKQKDTSTSDDRLETRIFNAKRID
KDKDMSCGKGDCLACVVWLDHQTKY
Run BLAST on NCBI

transcript from alignment at scaffold_289:319359..320303

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057496 ID=TCONS_00057496|Name=TCONS_00057496|organism=Clytia hemisphaerica|type=transcript|length=945bp|location=Sequence derived from alignment at scaffold_289:319359..320303 (Clytia hemisphaerica)
cactttgatccatgtcaacagggtcatacatttgctgttttgcacgctcg ttttcaacacgttacttttcgctgggccttcaagcCAACAGGCTTCTTGT TATTTCTAGAAAACAACGATGAACCAAGtaacaaaaagaacaaacaagTT GAAAAGCACAAACTTATCCAATCTCGTTGCAACTGCAAATTGGACTGCTC GAAATTCTCAGAAGACAAACGAGTTAAATTGCACTTTTGGGACCTTGACT ATAACCATCAAAAAGTATGGATTTACAATCACATTGTTACAATGGAACCA GCCAGAAGATATGCTGACTCAAACAAAAGAAGAGCACGAAAGTATTGGGT TTCCGGATGCCTCTGgagaacaaaaatttgtttgcAAAGATATGTTCATT TCCACCTTGGGATACCGTTTCGACAAATTCATTTCAACCGCGTTGAGTAC AACCTCAAATTTTGGAGTGACTTTACAAGATAAAAGGGGTAAACATCCGC CAAAGCATGCAATGTCAGATTCTGGAAAACAGACTGCCATTCAACATGTT ATGTCATTCAATCCTCAAATTTCTCATTATCGGCGAGAGCATGCCCCAAA TCGGTTATATCTTCCATCAGAGCTGACCATTCAAGAAATGTACGAGGATT ATCTTGATCAAAGGAAAGAAAACAATGAGAATACCATGTCATATGTTCAG TATACTCGAATTGTGAAAAGTCAAAACATATCGTTTGCAAAGCTTGGAGA TGATGAGTGTGAGATGTGTGAAAGTCATAAACTTCATCTGAGAGATGTAA AGCAAAAAGACACTAGCACGAGTGATGACAGGCTCGAAACTAGGATTTTC AATGCCAAAAGAATTGACAAGGATAAAGACATGTCTTGTGGAAAAGGTGA TTGCTTAGCGTGTGTAGTTTGGCTAGATCACCAAACGAAGTACAG

Coding sequence (CDS) from alignment at scaffold_289:319359..320303

>TCONS_00057496 ID=TCONS_00057496|Name=TCONS_00057496|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_289:319359..320303 (Clytia hemisphaerica)
ATGAACCAAGtaacaaaaagaacaaacaagTTGAAAAGCACAAACTTATC
CAATCTCGTTGCAACTGCAAATTGGACTGCTCGAAATTCTCAGAAGACAA
ACGAGTTAAATTGCACTTTTGGGACCTTGACTATAACCATCAAAAAGTAT
GGATTTACAATCACATTGTTACAATGGAACCAGCCAGAAGATATGCTGAC
TCAAACAAAAGAAGAGCACGAAAGTATTGGGTTTCCGGATGCCTCTGgag
aacaaaaatttgtttgcAAAGATATGTTCATTTCCACCTTGGGATACCGT
TTCGACAAATTCATTTCAACCGCGTTGAGTACAACCTCAAATTTTGGAGT
GACTTTACAAGATAAAAGGGGTAAACATCCGCCAAAGCATGCAATGTCAG
ATTCTGGAAAACAGACTGCCATTCAACATGTTATGTCATTCAATCCTCAA
ATTTCTCATTATCGGCGAGAGCATGCCCCAAATCGGTTATATCTTCCATC
AGAGCTGACCATTCAAGAAATGTACGAGGATTATCTTGATCAAAGGAAAG
AAAACAATGAGAATACCATGTCATATGTTCAGTATACTCGAATTGTGAAA
AGTCAAAACATATCGTTTGCAAAGCTTGGAGATGATGAGTGTGAGATGTG
TGAAAGTCATAAACTTCATCTGAGAGATGTAAAGCAAAAAGACACTAGCA
CGAGTGATGACAGGCTCGAAACTAGGATTTTCAATGCCAAAAGAATTGAC
AAGGATAAAGACATGTCTTGTGGAAAAGGTGATTGCTTAGCGTGTGTAGT
TTGGCTAGATCACCAAACGAAGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036237XLOC_036237Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057496-proteinTCONS_00057496-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057496-exon-scaffold_289-1491911889:319359..320303TCONS_00057496-exon-scaffold_289-1491911889:319359..320303Clytia hemisphaericaexon
TCONS_00057496-exon-scaffold_289-1510915933:319359..320303TCONS_00057496-exon-scaffold_289-1510915933:319359..320303Clytia hemisphaericaexon
TCONS_00057496-exon-scaffold_289-1575043694:319359..320303TCONS_00057496-exon-scaffold_289-1575043694:319359..320303Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:319359..320303 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.148085 tpm) - - (1.80466 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.184033 0.596022 0.970144 0.685101 0.869018 0.509224 0.847057 0.422867 0.472131 0.75719 0.411072 0.209581 0.618618 0.58831 0.500257 0.442613 0.955515 1.08383 0.872783 0.730291 0.148085 0.391052 0.475223 0.478799 1.77593 1.51159 0.753781 1.14874 1.39707 1.80466
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019480Dihydroorotate_DH_Fe-S-bd
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800900Sequence
Match NameE-valueIdentityDescription
back to top