Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057535 ID=TCONS_00057535|Name=TCONS_00057535|organism=Clytia hemisphaerica|type=transcript|length=810bp tgaaatttcggaaagtcatgttttgaaaaaatctaatgaagaTATTAATG ATACTAATACTAATCAGAGACTCACGggtgtttttgttaattctaatgtt tttaatctCTCCAAAAGGCAACTGTCTAAAGCTGAAATTTCTTTGCTCTC TAAAGCACTCAAGTTCGTTCCCACTCCTAACTTTGTAAACCATGCGCTTT TGAAGGAGGAACTTGAGAAGTTTGGTCGATTTTTAAGATTGAAGTGGTTT TATCGGAATGAAGAGAGGACAGACTACAATCTTTTCCGTcccaaatcaaa atttaatccTAGAGGAAAAGATGCTGCGATCGAAATTTACCTTAGTCGTC TGGAAGAAGAAATTTTAGCTATAGACACAAAACttaattattcaaattta acaAGGGAGGAACGAGAGGCTATTAACAATTAAATCTTTGAAAGAGGATT CTAGTATAGTAATTAAAGAGGCTGATAAGGGTTCTGCGGTTGTAGTCTGG GATCGGGATGATTATCTCCAAGAAGCATCTAATCAACTTGGAGATAAAGC TACTTATGAGGAGATTTTTGGCGATTGTATCAGTCCTCTTATAGCTACTA TACAGGATTGTCTTTTGAAGATAAGTTCTAGAGGTGATGTTCCTAAACAA ACCATGGATTATTTTCTTGTTGATAACCCCCGCCTGGGTCGATTCTACTT GCTTCCTAAAATACACAAGAGGCTGCATAGTGTCCCCGGGAGACCAGTTA TTTCAAATTCTGGTTATTTCACAGAAAATATCTCAGCGTTTGTTGATCAT CATCTCCAGC Run BLAST on NCBI protein sequence of TCONS_00057535-protein >TCONS_00057535-protein ID=TCONS_00057535-protein|Name=TCONS_00057535-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
EISESHVLKKSNEDINDTNTNQRLTGVFVNSNVFNLSKRQLSKAEISLLS KALKFVPTPNFVNHALLKEELEKFGRFLRLKWFYRNEERTDYNLFRPKSK FNPRGKDAAIEIYLSRLEEEILAIDTKLNYSNLTREEREAINN Run BLAST on NCBI transcript from alignment at scaffold_291:101414..102223 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057535 ID=TCONS_00057535|Name=TCONS_00057535|organism=Clytia hemisphaerica|type=transcript|length=810bp|location=Sequence derived from alignment at scaffold_291:101414..102223 (Clytia hemisphaerica) GCTGGAGATGATGATCAACAAACGCTGAGATATTTTCTGTGAAATAACCA
GAATTTGAAATAACTGGTCTCCCGGGGACACTATGCAGCCTCTTGTGTAT
TTTAGGAAGCAAGTAGAATCGACCCAGGCGGGGGTTATCAACAAGAAAAT
AATCCATGGTTTGTTTAGGAACATCACCTCTAGAACTTATCTTCAAAAGA
CAATCCTGTATAGTAGCTATAAGAGGACTGATACAATCGCCAAAAATCTC
CTCATAAGTAGCTTTATCTCCAAGTTGATTAGATGCTTCTTGGAGATAAT
CATCCCGATCCCAGACTACAACCGCAGAACCCTTATCAGCCTCTTTAATT
ACTATACTAGAATCCTCTTTCAAAGATTTAATTGTTAATAGCCTCTCGTT
CCTCCCTtgttaaatttgaataattaaGTTTTGTGTCTATAGCTAAAATT
TCTTCTTCCAGACGACTAAGGTAAATTTCGATCGCAGCATCTTTTCCTCT
AggattaaattttgatttgggACGGAAAAGATTGTAGTCTGTCCTCTCTT
CATTCCGATAAAACCACTTCAATCTTAAAAATCGACCAAACTTCTCAAGT
TCCTCCTTCAAAAGCGCATGGTTTACAAAGTTAGGAGTGGGAACGAACTT
GAGTGCTTTAGAGAGCAAAGAAATTTCAGCTTTAGACAGTTGCCTTTTGG
AGagattaaaaacattagaattaacaaaaacaccCGTGAGTCTCTGATTA
GTATTAGTATCATTAATAtcttcattagattttttcaaaacatgactttc
cgaaatttca Coding sequence (CDS) from alignment at scaffold_291:101414..102223 >TCONS_00057535 ID=TCONS_00057535|Name=TCONS_00057535|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_291:101414..102223 (Clytia hemisphaerica) TTAATTGTTAATAGCCTCTCGTTCCTCCCTtgttaaatttgaataattaa GTTTTGTGTCTATAGCTAAAATTTCTTCTTCCAGACGACTAAGGTAAATT TCGATCGCAGCATCTTTTCCTCTAggattaaattttgatttgggACGGAA AAGATTGTAGTCTGTCCTCTCTTCATTCCGATAAAACCACTTCAATCTTA AAAATCGACCAAACTTCTCAAGTTCCTCCTTCAAAAGCGCATGGTTTACA AAGTTAGGAGTGGGAACGAACTTGAGTGCTTTAGAGAGCAAAGAAATTTC AGCTTTAGACAGTTGCCTTTTGGAGagattaaaaacattagaattaacaa aaacaccCGTGAGTCTCTGATTAGTATTAGTATCATTAATAtcttcatta gattttttcaaaacatgactttccgaaatttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057535-exon-scaffold_291-1491911889:101414..102223 | TCONS_00057535-exon-scaffold_291-1491911889:101414..102223 | Clytia hemisphaerica | exon |
TCONS_00057535-exon-scaffold_291-1510915933:101414..102223 | TCONS_00057535-exon-scaffold_291-1510915933:101414..102223 | Clytia hemisphaerica | exon |
TCONS_00057535-exon-scaffold_291-1575043694:101414..102223 | TCONS_00057535-exon-scaffold_291-1575043694:101414..102223 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_291 | supercontig | scaffold_291:101414..102223 . |
Blast
The following BLAST results are available for this feature:
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