TCONS_00057541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057541
Unique NameTCONS_00057541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057541 ID=TCONS_00057541|Name=TCONS_00057541|organism=Clytia hemisphaerica|type=transcript|length=2304bp
AATCCTTGCTTTTTGAAAGCAGACGAAAGCCTTTTGATCAACTGAACTTT
GTTAGATGGTTAGATAAGAACAATTCTCTGTTGGTAGTCACTTTACCATC
TAGTGAGATGGAAACGAAAGCTGATGTTTTCCCCGATCTTCGATCGTGTT
CTTGTCCTTTTGTTGACATTTCATCCTcatttccatcgaaaacaatgaCA
ACAGTAGAAAAAACACTTGAAGTTATTCTTGAGGAAGTTGACATACTCGT
CGATCACCGCTGAATATGTTGTTTTCGGCCACGAGACTTTGNggaatttc
agtcccattcagggtcactttttttgcaaatttcgagtcccacgtagggt
ccatttttcgaacctcagcggagcacccccgtctgtcgacaagggtagta
cccccccccgggattctAGCTGGCAAGCGTTTGCTTGCATGCGTTTGCTT
TGTGATGAAGTGGTTACGAAGGTTTGACTTTTGAGGTTTTCGCATCATTC
CAAGCTTGAATAATGATATAGGTTCGGGGGTNCTTTTGAGGTTTTCGCAT
CATTCCAAGCTTGAATAATGATATAGGTTCGGGGGTTAGGTCAGGACAGA
AATTTTCACCAACATCCTCAGTGAAGTTGCCAAGAGCAATGAGTCGACTA
AACACTATTGTCTCCAATCTTGATTGCTGAAAGCATGTCTTCGAAGGTTT
TTGCTTTCTCCTTCTGTGAATCCTGACCTCCTCGAACACAACGTCGTCTT
GCTTCAACGTCTTCGGCGACATCACAGTTAATCTCTGGCTCAGCGATCAG
TTAACTCGAGAGACTCTTCAATTCAGGCTCTGTCTTGTCGAACGGTTTGT
GGTTGCCAAACCAATCCTTCACGGTAGCGAAATCTGTATCGCCACGCTTC
ATTCTGCTCAGCGAAAGATTGACATGTTGCTCGCTCGTTTTGACATAGCG
TTGTGGATGTCGGCAGATCAATGAATGCTTCCAATCCAAAGTTGACGTGT
TGATGCGGCGATTCCCCTACTACAAGTGAGGCCTCCAGTGCTTTTGATGA
ATTGCATCATTACCTGCTTGATGATCAAATCCGACCATAAACCAGNTTGC
TTTTGATTAATTGCATCATAACCTGCTTGATGATCAAATCCGACCATAAA
CCAGCCCAAAATCTATCGCTTCGTCTCACAGTGTGGTTCGTCTCACAGTG
TGGTAACCATTTGAAAACTGCTTGTAAACCCAAGGGTGAGTTATCTTGAG
CTCGAGTATATTTTGGAGATGTAGCCTGGCGTTCTTAGCGTAGTGGATGT
GAGTGGTTGCTGCAAACAGGTCGATCATCCGAGAAAAGGTAAAGCTTCCA
ATCTCCTTTCTTTCCTGATCTAATGAAATCCTTGACAACTTCCTTGTAAT
CAAGATATTGAAACCATAATTTCGCGGTACGTGAGCATGTTTTCAGATCA
TCTTTGTAATCTTCTAGAAGTTCCAGAAGTTTGGATATCTGCTCATGTCC
AAATCAATGGTGGGATCAACAGAATTGGCAATCACGTTCAGATCGGTTGT
CAGATCTTCGATTTCTACAGCCTCATCATCAGAACCAACAAGTGGTGACA
CCAATTTGCAAACAGGAGCAGATTCAACTAGAAAATGTGCCCTCAGTGCT
CACTAGTGATGTGTGGAACAGTGTTCTTTGCATAAATCTGCTCCATCGAT
TCCTCCAAGCCACTTGCTTTCATTAACGATCATACGCTTTAATCCACAAG
GGTTGATCAAACGTAATCACAGGGGTGTTGATGCCTGAGAATTCCGATTG
agattttacaaacatgagcGTTGAGTAGGCACATGTCATATCATTCGGGT
TTAAGTCGATGATCGGGAGCAGCGATACTGAAGATTGACCATGGTAGGTG
CCAGCGCAGACTTTGCTCATATACCCGGGCAAGCTTGGTTGGAGCATCAG
ATGAAAGTGAAGGACGTGAAATATACTATCATATATGATTCCTTCGGGGA
GAACGTTGAACTTTAATCGTGTAGCATTGTTTTATGGTGTAgatgaaaaa
acgagtcccacctCATGAAGTGTTCTCTTTCCGTCAATTGTGCAAAAGTC
GTGATCGACGTTATCATCGGACCATCGCCCGAACTTACCGACTAGATTCG
CGAAGCTTTTTTAATCCCTGGCCTTCAAAGAACAAAGTTCACAAACTCAA
AACATTGAGAAATCTCATGAAATTTTAAAGCATAATTTAACGATATCTTA
CATTTCTCAATTTCCCGATTATGTGAGCCCGTATTCCCCGAAAACCTATT
TCAT
Run BLAST on NCBI

protein sequence of TCONS_00057541-protein

>TCONS_00057541-protein ID=TCONS_00057541-protein|Name=TCONS_00057541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MSPKTLKQDDVVFEEVRIHRRRKQKPSKTCFQQSRLETIVFSRLIALGNF
TEDVGENFCPDLTPEPISLFKLGMMRKPQKXPRTYIIIQAWNDAKTSKVK
PS
Run BLAST on NCBI

transcript from alignment at scaffold_291:233430..235733

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057541 ID=TCONS_00057541|Name=TCONS_00057541|organism=Clytia hemisphaerica|type=transcript|length=2304bp|location=Sequence derived from alignment at scaffold_291:233430..235733 (Clytia hemisphaerica)
ATGAAATAGGTTTTCGGGGAATACGGGCTCACATAATCGGGAAATTGAGA AATGTAAGATATCGTTAAATTATGCTTTAAAATTTCATGAGATTTCTCAA TGTTTTGAGTTTGTGAACTTTGTTCTTTGAAGGCCAGGGATTAAAAAAGC TTCGCGAATCTAGTCGGTAAGTTCGGGCGATGGTCCGATGATAACGTCGA TCACGACTTTTGCACAATTGACGGAAAGAGAACACTTCATGaggtgggac tcgttttttcatcTACACCATAAAACAATGCTACACGATTAAAGTTCAAC GTTCTCCCCGAAGGAATCATATATGATAGTATATTTCACGTCCTTCACTT TCATCTGATGCTCCAACCAAGCTTGCCCGGGTATATGAGCAAAGTCTGCG CTGGCACCTACCATGGTCAATCTTCAGTATCGCTGCTCCCGATCATCGAC TTAAACCCGAATGATATGACATGTGCCTACTCAACgctcatgtttgtaaa atctCAATCGGAATTCTCAGGCATCAACACCCCTGTGATTACGTTTGATC AACCCTTGTGGATTAAAGCGTATGATCGTTAATGAAAGCAAGTGGCTTGG AGGAATCGATGGAGCAGATTTATGCAAAGAACACTGTTCCACACATCACT AGTGAGCACTGAGGGCACATTTTCTAGTTGAATCTGCTCCTGTTTGCAAA TTGGTGTCACCACTTGTTGGTTCTGATGATGAGGCTGTAGAAATCGAAGA TCTGACAACCGATCTGAACGTGATTGCCAATTCTGTTGATCCCACCATTG ATTTGGACATGAGCAGATATCCAAACTTCTGGAACTTCTAGAAGATTACA AAGATGATCTGAAAACATGCTCACGTACCGCGAAATTATGGTTTCAATAT CTTGATTACAAGGAAGTTGTCAAGGATTTCATTAGATCAGGAAAGAAAGG AGATTGGAAGCTTTACCTTTTCTCGGATGATCGACCTGTTTGCAGCAACC ACTCACATCCACTACGCTAAGAACGCCAGGCTACATCTCCAAAATATACT CGAGCTCAAGATAACTCACCCTTGGGTTTACAAGCAGTTTTCAAATGGTT ACCACACTGTGAGACGAACCACACTGTGAGACGAAGCGATAGATTTTGGG CTGGTTTATGGTCGGATTTGATCATCAAGCAGGTTATGATGCAATTAATC AAAAGCAANCTGGTTTATGGTCGGATTTGATCATCAAGCAGGTAATGATG CAATTCATCAAAAGCACTGGAGGCCTCACTTGTAGTAGGGGAATCGCCGC ATCAACACGTCAACTTTGGATTGGAAGCATTCATTGATCTGCCGACATCC ACAACGCTATGTCAAAACGAGCGAGCAACATGTCAATCTTTCGCTGAGCA GAATGAAGCGTGGCGATACAGATTTCGCTACCGTGAAGGATTGGTTTGGC AACCACAAACCGTTCGACAAGACAGAGCCTGAATTGAAGAGTCTCTCGAG TTAACTGATCGCTGAGCCAGAGATTAACTGTGATGTCGCCGAAGACGTTG AAGCAAGACGACGTTGTGTTCGAGGAGGTCAGGATTCACAGAAGGAGAAA GCAAAAACCTTCGAAGACATGCTTTCAGCAATCAAGATTGGAGACAATAG TGTTTAGTCGACTCATTGCTCTTGGCAACTTCACTGAGGATGTTGGTGAA AATTTCTGTCCTGACCTAACCCCCGAACCTATATCATTATTCAAGCTTGG AATGATGCGAAAACCTCAAAAGNACCCCCGAACCTATATCATTATTCAAG CTTGGAATGATGCGAAAACCTCAAAAGTCAAACCTTCGTAACCACTTCAT CACAAAGCAAACGCATGCAAGCAAACGCTTGCCAGCTagaatcccggggg ggggtactacccttgtcgacagacgggggtgctccgctgaggttcgaaaa atggaccctacgtgggactcgaaatttgcaaaaaaagtgaccctgaatgg gactgaaattccNCAAAGTCTCGTGGCCGAAAACAACATATTCAGCGGTG ATCGACGAGTATGTCAACTTCCTCAAGAATAACTTCAAGTGTTTTTTCTA CTGTTGtcattgttttcgatggaaatgAGGATGAAATGTCAACAAAAGGA CAAGAACACGATCGAAGATCGGGGAAAACATCAGCTTTCGTTTCCATCTC ACTAGATGGTAAAGTGACTACCAACAGAGAATTGTTCTTATCTAACCATC TAACAAAGTTCAGTTGATCAAAAGGCTTTCGTCTGCTTTCAAAAAGCAAG GATT

Coding sequence (CDS) from alignment at scaffold_291:233430..235733

>TCONS_00057541 ID=TCONS_00057541|Name=TCONS_00057541|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_291:233430..235733 (Clytia hemisphaerica)
ATGTCGCCGAAGACGTTGAAGCAAGACGACGTTGTGTTCGAGGAGGTCAG
GATTCACAGAAGGAGAAAGCAAAAACCTTCGAAGACATGCTTTCAGCAAT
CAAGATTGGAGACAATAGTGTTTAGTCGACTCATTGCTCTTGGCAACTTC
ACTGAGGATGTTGGTGAAAATTTCTGTCCTGACCTAACCCCCGAACCTAT
ATCATTATTCAAGCTTGGAATGATGCGAAAACCTCAAAAGNACCCCCGAA
CCTATATCATTATTCAAGCTTGGAATGATGCGAAAACCTCAAAAGTCAAA
CCTTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036278XLOC_036278Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057541-proteinTCONS_00057541-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057541-exon-scaffold_291-1491911889:233430..235733TCONS_00057541-exon-scaffold_291-1491911889:233430..235733Clytia hemisphaericaexon
TCONS_00057541-exon-scaffold_291-1510915933:233430..235733TCONS_00057541-exon-scaffold_291-1510915933:233430..235733Clytia hemisphaericaexon
TCONS_00057541-exon-scaffold_291-1575043694:233430..235733TCONS_00057541-exon-scaffold_291-1575043694:233430..235733Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_291supercontigscaffold_291:233430..235733 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.058962 tpm) - - (3.51392 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0935177 0.137254 0.172153 0.140821 1.16812 0.777358 1.33862 1.73553 1.34332 1.37896 2.13503 1.27475 1.52919 2.27674 0.193296 0.324192 0.240481 0.810129 0.632958 0.662083 0.299004 0.232549 0.058962 0.145266 3.50676 3.51392 0.254839 0.143846 0.1623 0.0745399
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200Sequence
Match NameE-valueIdentityDescription
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