TCONS_00057625 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057625
Unique NameTCONS_00057625
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length854

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057625 ID=TCONS_00057625|Name=TCONS_00057625|organism=Clytia hemisphaerica|type=transcript|length=854bp
ccgatatcgtctatttcaAATTCTGTATGTGTCACGCTAAAATAGTAGgt
cgatatcgtctattctttTAGTATATAAATATaagtaaatttaattttta
aattacATGATACCTAAATCattaaaaattaattcaaaatatgttgcttt
ttaaacactcctgtgtcacagacccggtggtcCGGAGCGGGGAGCATCCA
CAacttcagccccactgggataTTGACTTTCAATTGAATAATTTCGTTCT
AAGCATCTCCACAGGATTTATCCCCACTGCTGGAAGAAGTtccatcgggg
ctgtgagacgAGGATGTTTAATCTTATCACTAGATAAGATATTTTGTCGA
GTATAAATCAATGAAAGTCGACTTTAACGATGTTATTGTCCATTAAATCA
ATAACTTAACAAATAGTTTTCGTTGACATCATACATTACTGAACGAGCAT
GTCTGCATTTCCGATAAAACAAGTGATAGAAATCAATATCTGGACAACAA
TATTTCTTTTGCCAGTAACATGCGATCAAAGTCACCACAAGACCAAATAA
AATTATCATCACCAGAATTGTGAACACCAAAAGAAAAACGCTGACTTCGG
TACGTGGATAGTTGCGGAAGCTTTTATGGTCAGGTTCTGGATCAAATGTA
TCGAGAATCTCAAATCCGGTTTCATCATTCTCGGTCTTGGCATTTCTTCG
TTTGATTCTATGTTCCCGATCTTTGTTCACAATTTGCGTTTCATCATAAC
CAAAGCTGTTTTTTTGGGACGAAAATTCGAATTCCTGTAATTTTCGAGCA
GATTTAGTAAGTGTTCTTGTATATACGGTGAAGAACGAAATTATAACAAT
GAAC
Run BLAST on NCBI

protein sequence of TCONS_00057625-protein

>TCONS_00057625-protein ID=TCONS_00057625-protein|Name=TCONS_00057625-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
FIVIISFFTVYTRTLTKSARKLQEFEFSSQKNSFGYDETQIVNKDREHRI
KRRNAKTENDETGFEILDTFDPEPDHKSFRNYPRTEVSVFLLVFTILVMI
ILFGLVVTLIACYWQKKYCCPDIDFYHLFYRKCRHARSVMYDVNENYLLS
Y
Run BLAST on NCBI

transcript from alignment at scaffold_294:115526..116379

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057625 ID=TCONS_00057625|Name=TCONS_00057625|organism=Clytia hemisphaerica|type=transcript|length=854bp|location=Sequence derived from alignment at scaffold_294:115526..116379 (Clytia hemisphaerica)
GTTCATTGTTATAATTTCGTTCTTCACCGTATATACAAGAACACTTACTA AATCTGCTCGAAAATTACAGGAATTCGAATTTTCGTCCCAAAAAAACAGC TTTGGTTATGATGAAACGCAAATTGTGAACAAAGATCGGGAACATAGAAT CAAACGAAGAAATGCCAAGACCGAGAATGATGAAACCGGATTTGAGATTC TCGATACATTTGATCCAGAACCTGACCATAAAAGCTTCCGCAACTATCCA CGTACCGAAGTCAGCGTTTTTCTTTTGGTGTTCACAATTCTGGTGATGAT AATTTTATTTGGTCTTGTGGTGACTTTGATCGCATGTTACTGGCAAAAGA AATATTGTTGTCCAGATATTGATTTCTATCACTTGTTTTATCGGAAATGC AGACATGCTCGTTCAGTAATGTATGATGTCAACGAAAACTATTTGTTAAG TTATTGATTTAATGGACAATAACATCGTTAAAGTCGACTTTCATTGATTT ATACTCGACAAAATATCTTATCTAGTGATAAGATTAAACATCCTcgtctc acagccccgatggaACTTCTTCCAGCAGTGGGGATAAATCCTGTGGAGAT GCTTAGAACGAAATTATTCAATTGAAAGTCAAtatcccagtggggctgaa gtTGTGGATGCTCCCCGCTCCGgaccaccgggtctgtgacacaggagtgt ttaaaaagcaacatattttgaattaatttttaatGATTTAGGTATCATgt aatttaaaaattaaatttacttATATTTATATACTAaaagaatagacgat atcgacCTACTATTTTAGCGTGACACATACAGAATTtgaaatagacgata tcgg

Coding sequence (CDS) from alignment at scaffold_294:115526..116379

>TCONS_00057625 ID=TCONS_00057625|Name=TCONS_00057625|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_294:115526..116379 (Clytia hemisphaerica)
TTCATTGTTATAATTTCGTTCTTCACCGTATATACAAGAACACTTACTAA
ATCTGCTCGAAAATTACAGGAATTCGAATTTTCGTCCCAAAAAAACAGCT
TTGGTTATGATGAAACGCAAATTGTGAACAAAGATCGGGAACATAGAATC
AAACGAAGAAATGCCAAGACCGAGAATGATGAAACCGGATTTGAGATTCT
CGATACATTTGATCCAGAACCTGACCATAAAAGCTTCCGCAACTATCCAC
GTACCGAAGTCAGCGTTTTTCTTTTGGTGTTCACAATTCTGGTGATGATA
ATTTTATTTGGTCTTGTGGTGACTTTGATCGCATGTTACTGGCAAAAGAA
ATATTGTTGTCCAGATATTGATTTCTATCACTTGTTTTATCGGAAATGCA
GACATGCTCGTTCAGTAATGTATGATGTCAACGAAAACTATTTGTTAAGT
TATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036343XLOC_036343Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057625-proteinTCONS_00057625-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057625-exon-scaffold_294-1491911889:115526..116379TCONS_00057625-exon-scaffold_294-1491911889:115526..116379Clytia hemisphaericaexon
TCONS_00057625-exon-scaffold_294-1510915933:115526..116379TCONS_00057625-exon-scaffold_294-1510915933:115526..116379Clytia hemisphaericaexon
TCONS_00057625-exon-scaffold_294-1575043694:115526..116379TCONS_00057625-exon-scaffold_294-1575043694:115526..116379Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_294supercontigscaffold_294:115526..116379 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (4.19295 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0550043 0.0536378 0 0 0 0 0.565733 0.463428 0.231755 0.114826 0.278633 0.109898 0 0 0 0.033518 0.28904 0.296257 0 0 1.22317 0.700378 0.315334 0.401358 4.19295 3.47858 0.150843 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800Sequence
Match NameE-valueIdentityDescription
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