TCONS_00057653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057653
Unique NameTCONS_00057653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2040

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057653 ID=TCONS_00057653|Name=TCONS_00057653|organism=Clytia hemisphaerica|type=transcript|length=2040bp
CTGAATGAAACCATAAACCATGTACATTAAATTGGCGTCAACAGAGTCAT
TGATGAATGAAGTACGGGTCAGCAACCGATCTTCGAATCTGATGGTCAAT
GGGGATGTCATGAAGATATCCAAAGATTGGATGAAAAACGCAGATGTCGT
CAAAAGTCTTAGAAACCCAGgtTTTGCTGGAATACACGACATTGAGAAGT
ATTTCAAGTCAATCAATTTGAAACTTGGTCAGAAACGAGTAGGGAAAGCT
TTCGTTGTTTTTGGGATTCCAACCGTCAAGAGAAGTAAAGCTTATTACGT
CATCCAAACGGTATCTTCCTTGCTCAAACacatgaaaatttcagaaagga
AAAATGTTGTCATCGTCATTTTTGTGGCAGATCTTGACGATAATTTTCTT
AGGAAAGTCGTAAAAGATGTTCGACAGGACTTTACAGGCGAAGTTAAAGA
CGGTATCATTCAAGTGGTTGCTCCTGATAAAGCCTACTATCCTAAGAATC
TGGATAATTTGCCAAGACTTTTTGGTGATGAACAAGATCGAGTCCGCTGG
AGATCGAAGCAGTGCCTCGATTATTCATATTTGTATTATTACTGTAAAGA
TATGGCGCAATATTTTGTTCAGCTTGAAGATGATATAATTGCTGTTGATG
ATTATATGGGGAAAATGCGGGAATTTATAACGAAAAACGAGAAACTTCGT
TGGTCGGTCCTTGAGTTCGGTGCCCGAGGATTTATCGGAATGACTTATCG
GGGAGAACATCTAGAATCGTTGGCAAAGTTTACCAGATATTTCTTTTGGA
CCATGCCAGTCGACTGGCTTTTTCGAGTTTATAACAATAtctttttatat
caaaatccTAAGAGCTTTCGTACAAGCGAACCTTTGTTCTTACATATCGG
AAAGTTCTCTTCCTTAGATGGCCAAACGAGGTCAAATCTTATAGATCTGC
CACTGGTCGGGAGACGTCGATTTCAATTGAGAAACGGAAATCCACCAGCT
ATCATCAAGTCTGACTTGAAAGACTTTTATATGAAGAATTTCTTAGAAAA
CCCATATTCCAAAAAAGGGGCGATGTGGAGTAAAACACCTCACAATGGAG
ATACTATTACAATTATGTTTAATTCGactcaaaaagtcaaaagaatTGTT
TTCGTCAGTGGGTTAGAAGATTATAAAAAAGACAGCTTCTATGAAACTGA
ATTATACATCTCTCAAATGAGAGGTAATGCGAATTCGAAATGTGGGAAGT
TTGAGCTGGTGAAATTTTACAAAGAAGCAATAGTTGATATTACTTTTGAT
GAACCTAAAGAAAACGTTTGGTGTGTCAAACTGGAGTTGACAACTGTCAA
GAAAACGAAAGGAATTCCAAACTGGTTGATTATTGAAGAAATTGCTATTC
TTATTAGTTGATTTACAATATTTATATACTAAGTGTATAACTACTATGTT
TCGTCCTTTGGGCTTAGAATTCAATCTTATTACcctcccccaccatccaa
agggctttatTGTGCacatcataagccctttgggTAGTAAAGGGGAAACT
ATAGACTGGTTTAATCccaaagaacgaaaaattgcCCTTTAAGACCGATC
AAAACTCGAAAAATCGCATATTtcatgttttgtgacgtcatttgggcccT
ACATTACGTCATTGAAAGGGTAATAAATTCTttacttcactgaaatcaat
ttgtcatttaccCAAAAGATTCTCTCAATGACTTCCGATCCAATGCGGGG
TCAtccattgcttaaatccttctcaaactcgaaatattgtatttttcagg
ttttgataACGTCATTGGACCCAAAATGTCTCAATTTGGATATATCATTT
TTCgaaagtttctatatacccACTCTGACCCCTCCAATTTATTCTCTATT
AAATTCTAGATCCAATGAGGgttcaacgacctcccaaccgCTATTCAATC
GCGCGATATCAcaattttcctgttttgatgacgtcttcaactgaaaacgc
ctgaaaatttagtcaaattataaagtcacactcaagcctt
Run BLAST on NCBI

transcript from alignment at scaffold_297:89490..96813+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057653 ID=TCONS_00057653|Name=TCONS_00057653|organism=Clytia hemisphaerica|type=transcript|length=7324bp|location=Sequence derived from alignment at scaffold_297:89490..96813+ (Clytia hemisphaerica)
CTGAATGAAACCATAAACCATGTGTAAGGATATTTATTTGGAAAAAGTCT TTCTGTTGAATATCATGATGTTCTTTTGTCAAAGAGAAACCAAAAAACTA CAGCAGAGCCTATTTGGAAGTTTTGGTAGACAAAATCTGAAGGAAATCAA TATGTAAGGATATTTATTTGGAACAAGTCTTTCTGTCGAATATCATGACG TTCTTTGTCAAAGAGAAACCACAATACTACAGCAGagactctttaactcg aacctctataactcgaagtTCTCCTTcactcgtcccttcagttaacaatg cctttatAAATCTTActcaataactcgaaatttgtgtttctcgtGTGGGT TCGAGTTATGGTGACTTCGCTGCTCTAGATAGACCTGCTACGAAAATGGT GATCACAATTAAATAACTAATTACACAATTGATTAAGATAATTCTCTGCA GAACATTTTTAGCTGGATCATGTAAATNAGACCTGCTACGAAAATGGTGA TCACAATTAAATAACTAATTACACAATTGATTAAGATAATTCTCTGCAGA CCATTTTAGCTGGATCATGTAAATCAAGGAAGTATAAATTTGATCTGAAT ATGGCTGGCCGTATGTAGCAAAATTCAAtactttcatatttttcattcaa tctcCAATATTTGTAATCTTCCATAGCTACATTAAAAGATTATTGCCAGC ATAAAAATTTGTTgccaataaaataaatattgcaaataacatttttttct tattcaaaatgttttcagTAAACGTTGAATCTTTATTGGCAAAAATTATT GAAGGAAAATATTAAATAATTGAACATGAATatggaaaattgaatataaa tattagaaattgaatataattaatatggaaattgaatataaatattgaat tttgctAGGGCTCTGATCTGTATTGAATTTTCATATTTATCGTGTATAAA ATGGGTTGTACATAAACAGCAAAACCATGacatattatatattttctgtT AGGATAACTATGCCTGGatctaaaaaagtaaaaagttgcgatgataaaaa tttgatgaagatgaaaatgaagacttttgtaaagaagaatatttcaagtt tGAGGACCTTACTTTCGGTGAagagaaaacattttgaaaaaagattttga acataaaatatattttagggAAATCTTTcgtttcaaaatcttgaaaataa tgGTTATTGACCaaattttcgttctattttttcgttcaaaaagaatcata acttttgatacatcaatttagaaaattggTCCGAAAGATTTTAGATGGTC TTTAGAAAAAATTCggaacaaaaaggttaattacccattaaaactaagca cttttttaaaAGAGGGTACAAAATTTTTTAAGGTTAACTTTTTAAGGTCC ATCTAAAATTGTTCCGAAAATTTTTAGACGGTTTTaaggttcataacgtc atttttgtaaattgcTAATTACTCTTCAAAAGGAGCTTCAAACAAAAGTT CTGTATTCAAAACTCGTAACCGGCTCATAACCGATCTCTTGaccatggtc agagcccttaaatgtgATTTCATTGTTCTTTGTTTCGAGGAATTTTCATT AAGAGCTTTCATATGACCAAATATATTAATTGAATTGCATCAATCATCAT TTTACTgtgtttttaatggaacagaTTAATTAGGCCTAGAAAATGCTTTG AAGAGTTTTTGTTTTATGTAAGTGTAGTATTAGAAACATCGAATAAATTA GATGAGTCACTCTGATCggcttgtatttttgaagaaatttctcATCGTCA AATGCTAAAGCTAGATCTAAGGCAACTGGATGTCATATATCTTTCTTTCT GATGTGGTAAAACAATCAGGCTATATAGTTGCGATAAAAACCGNGAATTT TCATATTTATCGTGTATAAAATGGGTTGTACATAAACAGCAAAACCATGa catattatatattttctgtTAGGATAACTATGCCTGGatctaaaaaagta aaaagttgcgatgataaaaatttgatgaagatgaaaatgaagacttttgt aaagaagaatatttcaagtttGAGGACCTTACTTTCGGTGAagagaaaac attttgaaaaaagattttgaacataaaatatattttagggAAATCTTTcg tttcaaaatcttgaaaataatgGTTATTGACCaaattttcgttctatttt ttcgttcaaaaagaatcataacttttgatacatcaatttagaaaattggT CCGAAAGATTTTAGATGGTCTTTAGAAAAAATTCggaacaaaaaggttaa ttacccattaaaactaagcacttttttaaaAGAGGGTACAAAATTTTTTA AGGTTAACTTTTTAAGGTCCATCTAAAATTGTTCCGAAAATTTTTAGACG GTTTTaaggttcataacgtcatttttgtaaattgcTAATTACTCTTCAAA AGGAGCTTCAAACAAAAGTTCTGTATTCAAAACTCGTAACCGGCTCATAA CCGATCTCTTGaccatggtcagagcccttaaatgtgATTTCATTGTTCTT TGTTTCGAGGAATTTTCATTAAGAGCTTTCATATGACCAAATATATTAAT TGAATTGCATCAATCATCATTTTACTGTGTCTTTAATGGAACAGATTAAT TAGGCCTAGAAAATGCTTTGAAGAGTTTTTGTTTTATGTAAGTGTAGTAT TAGAAACATCAAATGAATTAGATGAGTCACTGATCggcttgtatttttga agaaatctCTCATCGTCAAATGTTAAAGCTGAATCTAAGATAACTGGATG TCATAAATCTTTCTCTTTAATGTGGTAAAACAACCAGGCTATATAGTTGC GATAAAAACGTGAAATTCGTGAAATTTTCATAACTTCTTACTTTGCTTTA ATAGTGATTGggaattataattttttatctaCTCTATGAATCAAAGCAGA ATAATTTGTGGATAAATAAGTAAAGAAATCATTCATGATGTGGAATACAA TGTTCATCAGAaagatttttcatgttttgcaAGTTTTCATGTTCATTTTT ATAATCGTTGTTAATGTGTCGTTTATTTTCCGTCGTTCTACAGAATCAGG TATGATCCACTTTCTAATATTGCAATAATTGCCCTTAATCATCCATACAA AATACTGTATCTGTACCCAGGGGCTGACCTGGACGGCCGACGGAGAcatg ccgctggagtttgaaaaattgactCTGTCAAACATTTAGAtatgaatcaa aaattttctcccaCTCAATTTATTCTCCTATGTCAAATCTGCATCTTGAA AGTAATTAAGTTTAATATCATGCCAGAATATCTTCACATCCCTGCATCAC TGCATCTGCATGACAATATAACTAAACCATTAGTTAGCTCAGGCCGTAAG ACAGTTCAACGGCGATGCAAAAAAGAGTCTCAATCTAGCCAATATACCAA ACAGAtttctaatttcaaaaaaatgtttaactcAATTCAGCTTTAGCTTC GAACCCAAACTCCTTCTCATATAAATTATAATCCAAGTAAGTCTTTCATG AATGTTTTTGGATTGCTTTCTAGCGTAATGATAGATATCTCTAGGCGGGT TTTCTCATTAATGACTTGTTTTTTATCAACACTTGATCTCACTTAATTTA AGACATTAAATTGGCGTCAACAGAGTCATTGATGAATGAAGTACGGGTCA GCAACCGATCTTCGAATCTGATGGTCAATGGGGATGTCATGAAGATATCC AAAGATTGGATGAAAAACGCAGATGTCGTCAAAAGTCTTAGAAACCCAGG TCTAGTTCACTATAATTACTactatattttaaaattatcatgAAATGTCA TTGAAAACAACCCtctgtcacagacccgctgggaccccagccctactgga aaatttgggaagAATTTCGtacccggtgggaaaataccctagaatttcag ccccactgggaaactgacttttatttcatccctattcaaaaaaattcagt atttcaaaattgcacttaaaaaccatccccactaaattttttaaccttgg aacaatagaatttctatacctattgggattttgatagaaattttgatTCC CGatgagaaaaaagttccaccggggctgttaGACAgggtatttgaaaata ttaaagtgAAACCTTTCAAGTAACGAAGTCAACTTTTCAAGCGGTTGCTT TCCTGGCTATTACATAAACCTATCATCAATATTGTTGTTGATTTTTCGGA ATAAAGGAGTCAACAAATGATCATATTCATCTAAATCTGAGGTTCGGGAC TTAAAAGTAAAATCCTTCTAGGTACACCTCCAAATGTAGATTGTAGACAT ATAAGACAAAACATTCTACTCAGGACCATATAGAAGGAATCCTAACTTGA TAAATATTCAATACCTTAAACTATTTGATATTGTAACCTTCTAatatgat tttcttttcttttcaaaaggtTTTGCTGGAATACACGACATTGAGAAGTA TTTCAAGTCAATCAATTTGAAACTTGGTCAGAAACGAGTAGGGAAAGGTA AAATTATCTCCATACAAATATTTATCCAGTCACTTCAATCTTTCCCAAAG GCCAAACTTCAATGCAGGCAGCCTATCAAGGAAATGCACGGACGAATCCT TATGTATCCTATGAATTTCTATCTTTCAGCTTTCGTTGTTTTTGGGATTC CAACCGTCAAGAGAAGTAAAGCTTATTACGTCATCCAAACGGTATCTTCC TTGCTCAAACacatgaaaatttcagaaaggaAAAATGTTGTCATCGTCAT TTTTGTGGCAGATCTTGACGATAATTTTCTTAGGAAAGTCGTAAAAGATG TTCGACAGANAATTGCACttaaaaaccatccccactaaattttttaacct tggaacaatagaatttctatacctattgggattttgatagaaattttgat TCCCGatgagaaaaaagttccaccggggctgttaGACAgggtatttgaaa atattaaagtgAAACCTTTCAAGTAACGAAGTCAACTTTTCAAGCGGTTG CTTTCCTGGCTATTACATAAACCTATCATCAATATTGTTGTTGATTTTTC GGAATAAAGGAGTCAACAAATGATCATATTCATCTAAATCTGAGGTTCGG GACTTAAAAGTAAAATCCTTCTAGGTACACCTCCAAATGTAGATTGTAGA CATATAAGACAAAACATTCTACTCAGGACCATATAGAAGGAATCCTAACT TGATAAATATTCAATACCTTAAACTATTTGATATTGTAACCTTCTAatat gattttcttttcttttcaaaaggtTTTGCTGGAATACACGACATTGAGAA GTATTTCAAGTCAATCAATTTGAAACTTGGTCAGAAACGAGTAGGGAAAG GTAAAATTATCTCCATACAAATATTTATCCAGTCACTTCAATCTTTCCCA AAGGCCAAACTTCAATGCAGGCAGCCTATCAAGGAAATGCACGGACGAAT CCTTATGTATCCTATGAATTTCTATCTTTCAGCTTTCGTTGTTTTTGGGA TTCCAACCGTCAAGAGAAGTAAAGCTTATTACGTCATCCAAACGGTATCT TCCTTGCTCAAACacatgaaaatttcagaaaggaAAAATGTTGTCATCGT CATTTTTGTGGCAGATCTTGACGATAATTTTCTTAGGAAAGTCGTAAAAG ATGTTCGACAGGACTTTACAGGCGAAGTTAAAGACGGTATCATTCAAGTG GTTGCTCCTGATAAAGCCTACTATCCTAAGAATCTGGATAATTTGCCAAG ACTTTTTGGTGATGAACAAGATCGAGTCCGCTGGAGATCGAAGCAGTGCC TCGATTATTCATATTTGTATTATTACTGTAAAGATATGGCGCAATATTTT GTTCAGCTTGAAGATGATATAATTGCTGTTGATGATTATATGGGGAAAAT GCGGGAATTTATAACGAAAAACGAGAAACTTCGTTGGTCGGTCCTTGAGT TCGGTGCCCGAGGATTTATCGGAATGACTTATCGGGGAGAACATCTAGAA TCGTTGGCAAAGTTTACCAGATATTTCTTTTGGACCATGCCAGTCGACTG GCTTTTTCGAGTTTATAACAATAtctttttatatcaaaatccTAAGAGCT TTCGTACAAGCGAACCTTTGTTCTTACATATCGGAAAGTTCTCTTCCTTA GATGGCCAAACGAGGTCAAATCTTATAGATCTGCCACTGGTCGGGAGACG TCGATTTCAATTGAGAAACGGAAATCCACCAGCTATCATCAAGTCTGACT TGAAAGACTTTTATATGAAGAATTTCTTAGAAAACCCATATTCCAAAAAA GGGGCGATGTGGAGTAAAACACCTCACAATGGAGATACTATTACAATTAT GTTTAATTCGactcaaaaagtcaaaagaatTGTTTTCGTCAGTGGGTTAG AAGATTATAAAAAAGACAGCTTCTATGAAACTGAATTATACATCTCTCAA ATGAGAGGTAATGCGAATTCGAAATGTGGGAAGTTTGAGCTGGTGAAATT TTACAAAGAAGCAATAGTTGATATTACTTTTGATGAACCTAAAGAAAACG TTTGGTGTGTCAAACTGGAGTTGACAACTGTCAAGAAAACGAAAGGAATT CCAAACTGGTTGATTATTGAAGAAATTGCTATTCTTATTAGTTGATTTAC AATATTTATATACTAAGTGTATAACTACTATGTTTCGTCCTTTGGGCTTA GAATTCAATCTTATTACcctcccccaccatccaaagggctttatTGTGCa catcataagccctttgggTAGTAAAGGGGAAACTATAGACTGGTTTAATC ccaaagaacgaaaaattgcCCTTTAAGACCGATCAAAACTCGAAAAATCG CATATTtcatgttttgtgacgtcatttgggcccTACATTACGTCATTGAA AGGGTAATAAATTCTttacttcactgaaatcaatttgtcatttaccCAAA AGATTCTCTCAATGACTTCCGATCCAATGCGGGGTCAtccattgcttaaa tccttctcaaactcgaaatattgtatttttcaggttttgataACGTCATT GGACCCAAAATGTCTCAATTTGGATATATCATTTTTCgaaagtttctata tacccACTCTGACCCCTCCAATTTATTCTCTATTAAATTCTAGATCCAAT GAGGgttcaacgacctcccaaccgCTATTCAATCGCGCGATATCAcaatt ttcctgttttgatgacgtcttcaactgaaaacgcctgaaaatttagtcaa attataaagtcacactcaagcctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036366XLOC_036366Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057653-exon-scaffold_297-1491911889:89490..89512TCONS_00057653-exon-scaffold_297-1491911889:89490..89512Clytia hemisphaericaexon
TCONS_00057653-exon-scaffold_297-1510915933:89490..89512TCONS_00057653-exon-scaffold_297-1510915933:89490..89512Clytia hemisphaericaexon
TCONS_00057653-exon-scaffold_297-1575043694:89490..89512TCONS_00057653-exon-scaffold_297-1575043694:89490..89512Clytia hemisphaericaexon
TCONS_00057653-exon-scaffold_297-1491911889:93142..93288TCONS_00057653-exon-scaffold_297-1491911889:93142..93288Clytia hemisphaericaexon
TCONS_00057653-exon-scaffold_297-1510915933:93142..93288TCONS_00057653-exon-scaffold_297-1510915933:93142..93288Clytia hemisphaericaexon
TCONS_00057653-exon-scaffold_297-1575043694:93142..93288TCONS_00057653-exon-scaffold_297-1575043694:93142..93288Clytia hemisphaericaexon
TCONS_00057653-exon-scaffold_297-1491911889:94812..94889TCONS_00057653-exon-scaffold_297-1491911889:94812..94889Clytia hemisphaericaexon
TCONS_00057653-exon-scaffold_297-1510915933:94812..94889TCONS_00057653-exon-scaffold_297-1510915933:94812..94889Clytia hemisphaericaexon
TCONS_00057653-exon-scaffold_297-1575043694:94812..94889TCONS_00057653-exon-scaffold_297-1575043694:94812..94889Clytia hemisphaericaexon
TCONS_00057653-exon-scaffold_297-1491911889:95022..96813TCONS_00057653-exon-scaffold_297-1491911889:95022..96813Clytia hemisphaericaexon
TCONS_00057653-exon-scaffold_297-1510915933:95022..96813TCONS_00057653-exon-scaffold_297-1510915933:95022..96813Clytia hemisphaericaexon
TCONS_00057653-exon-scaffold_297-1575043694:95022..96813TCONS_00057653-exon-scaffold_297-1575043694:95022..96813Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:89490..96813 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (0.178228 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00968808 0 0.0274868 0.0429271 0.0430249 0 0 0.046643 0 0.0101124 0.16293 0.0428054 0.0647153 0 0 0 0 0 2.71668e-07 0 0.178228 0 0 0 0.00196478 0 0.0531371 0.0321928 0 0.0986006
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
200400600800100012001400160018002000Expect = 7.86e-53 / Id = 32.76SequenceMGT4A
Match NameE-valueIdentityDescription
MGT4A7.859e-5332.76Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglu... [more]
back to top