TCONS_00057655 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057655
Unique NameTCONS_00057655
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2147

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057655 ID=TCONS_00057655|Name=TCONS_00057655|organism=Clytia hemisphaerica|type=transcript|length=2147bp
GTAAAGAAATCATTCATGATGTGGAATACAATGTTCATCAGAaagatttt
tcatgttttgcaAGTTTTCATGTTCATTTTTATAATCGTTGTTAATGTGT
CGTTTATTTTCCGTCGTTCTACAGAATCAGACATTAAATTGGCGTCAACA
GAGTCATTGATGAATGAAGTACGGGTCAGCAACCGATCTTCGAATCTGAT
GGTCAATGGGGATGTCATGAAGATATCCAAAGATTGGATGAAAAACGCAG
ATGTCGTCAAAAGTCTTAGAAACCCAGgtTTTGCTGGAATACACGACATT
GAGAAGTATTTCAAGTCAATCAATTTGAAACTTGGTCAGAAACGAGTAGG
GAAAGCTTTCGTTGTTTTTGGGATTCCAACCGTCAAGAGAAGTAAAGCTT
ATTACGTCATCCAAACGGTATCTTCCTTGCTCAAACacatgaaaatttca
gaaaggaAAAATGTTGTCATCGTCATTTTTGTGGCAGATCTTGACGATAA
TTTTCTTAGGAAAGTCGTAAAAGATGTTCGACAGGACTTTACAGGCGAAG
TTAAAGACGGTATCATTCAAGTGGTTGCTCCTGATAAAGCCTACTATCCT
AAGAATCTGGATAATTTGCCAAGACTTTTTGGTGATGAACAAGATCGAGT
CCGCTGGAGATCGAAGCAGTGCCTCGATTATTCATATTTGTATTATTACT
GTAAAGATATGGCGCAATATTTTGTTCAGCTTGAAGATGATATAATTGCT
GTTGATGATTATATGGGGAAAATGCGGGAATTTATAACGAAAAACGAGAA
ACTTCGTTGGTCGGTCCTTGAGTTCGGTGCCCGAGGATTTATCGGAATGA
CTTATCGGGGAGAACATCTAGAATCGTTGGCAAAGTTTACCAGATATTTC
TTTTGGACCATGCCAGTCGACTGGCTTTTTCGAGTTTATAACAATAtctt
tttatatcaaaatccTAAGAGCTTTCGTACAAGCGAACCTTTGTTCTTAC
ATATCGGAAAGTTCTCTTCCTTAGATGGCCAAACGAGGTCAAATCTTATA
GATCTGCCACTGGTCGGGAGACGTCGATTTCAATTGAGAAACGGAAATCC
ACCAGCTATCATCAAGTCTGACTTGAAAGACTTTTATATGAAGAATTTCT
TAGAAAACCCATATTCCAAAAAAGGGGCGATGTGGAGTAAAACACCTCAC
AATGGAGATACTATTACAATTATGTTTAATTCGactcaaaaagtcaaaag
aatTGTTTTCGTCAGTGGGTTAGAAGATTATAAAAAAGACAGCTTCTATG
AAACTGAATTATACATCTCTCAAATGAGAGGTAATGCGAATTCGAAATGT
GGGAAGTTTGAGCTGGTGAAATTTTACAAAGAAGCAATAGTTGATATTAC
TTTTGATGAACCTAAAGAAAACGTTTGGTGTGTCAAACTGGAGTTGACAA
CTGTCAAGAAAACGAAAGGAATTCCAAACTGGTTGATTATTGAAGAAATT
GCTATTCTTATTAGTTGATTTACAATATTTATATACTAAGTGTATAACTA
CTATGTTTCGTCCTTTGGGCTTAGAATTCAATCTTATTACcctcccccac
catccaaagggctttatTGTGCacatcataagccctttgggTAGTAAAGG
GGAAACTATAGACTGGTTTAATCccaaagaacgaaaaattgcCCTTTAAG
ACCGATCAAAACTCGAAAAATCGCATATTtcatgttttgtgacgtcattt
gggcccTACATTACGTCATTGAAAGGGTAATAAATTCTttacttcactga
aatcaatttgtcatttaccCAAAAGATTCTCTCAATGACTTCCGATCCAA
TGCGGGGTCAtccattgcttaaatccttctcaaactcgaaatattgtatt
tttcaggttttgataACGTCATTGGACCCAAAATGTCTCAATTTGGATAT
ATCATTTTTCgaaagtttctatatacccACTCTGACCCCTCCAATTTATT
CTCTATTAAATTCTAGATCCAATGAGGgttcaacgacctcccaaccgCTA
TTCAATCGCGCGATATCAcaattttcctgttttgatgacgtcttcaactg
aaaacgcctgaaaatttagtcaaattataaagtcacactcaagcctt
Run BLAST on NCBI

transcript from alignment at scaffold_297:92459..96813+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057655 ID=TCONS_00057655|Name=TCONS_00057655|organism=Clytia hemisphaerica|type=transcript|length=4355bp|location=Sequence derived from alignment at scaffold_297:92459..96813+ (Clytia hemisphaerica)
GTAAAGAAATCATTCATGATGTGGAATACAATGTTCATCAGAaagatttt tcatgttttgcaAGTTTTCATGTTCATTTTTATAATCGTTGTTAATGTGT CGTTTATTTTCCGTCGTTCTACAGAATCAGGTATGATCCACTTTCTAATA TTGCAATAATTGCCCTTAATCATCCATACAAAATACTGTATCTGTACCCA GGGGCTGACCTGGACGGCCGACGGAGAcatgccgctggagtttgaaaaat tgactCTGTCAAACATTTAGAtatgaatcaaaaattttctcccaCTCAAT TTATTCTCCTATGTCAAATCTGCATCTTGAAAGTAATTAAGTTTAATATC ATGCCAGAATATCTTCACATCCCTGCATCACTGCATCTGCATGACAATAT AACTAAACCATTAGTTAGCTCAGGCCGTAAGACAGTTCAACGGCGATGCA AAAAAGAGTCTCAATCTAGCCAATATACCAAACAGAtttctaatttcaaa aaaatgtttaactcAATTCAGCTTTAGCTTCGAACCCAAACTCCTTCTCA TATAAATTATAATCCAAGTAAGTCTTTCATGAATGTTTTTGGATTGCTTT CTAGCGTAATGATAGATATCTCTAGGCGGGTTTTCTCATTAATGACTTGT TTTTTATCAACACTTGATCTCACTTAATTTAAGACATTAAATTGGCGTCA ACAGAGTCATTGATGAATGAAGTACGGGTCAGCAACCGATCTTCGAATCT GATGGTCAATGGGGATGTCATGAAGATATCCAAAGATTGGATGAAAAACG CAGATGTCGTCAAAAGTCTTAGAAACCCAGGTCTAGTTCACTATAATTAC TactatattttaaaattatcatgAAATGTCATTGAAAACAACCCtctgtc acagacccgctgggaccccagccctactggaaaatttgggaagAATTTCG tacccggtgggaaaataccctagaatttcagccccactgggaaactgact tttatttcatccctattcaaaaaaattcagtatttcaaaattgcacttaa aaaccatccccactaaattttttaaccttggaacaatagaatttctatac ctattgggattttgatagaaattttgatTCCCGatgagaaaaaagttcca ccggggctgttaGACAgggtatttgaaaatattaaagtgAAACCTTTCAA GTAACGAAGTCAACTTTTCAAGCGGTTGCTTTCCTGGCTATTACATAAAC CTATCATCAATATTGTTGTTGATTTTTCGGAATAAAGGAGTCAACAAATG ATCATATTCATCTAAATCTGAGGTTCGGGACTTAAAAGTAAAATCCTTCT AGGTACACCTCCAAATGTAGATTGTAGACATATAAGACAAAACATTCTAC TCAGGACCATATAGAAGGAATCCTAACTTGATAAATATTCAATACCTTAA ACTATTTGATATTGTAACCTTCTAatatgattttcttttcttttcaaaag gtTTTGCTGGAATACACGACATTGAGAAGTATTTCAAGTCAATCAATTTG AAACTTGGTCAGAAACGAGTAGGGAAAGGTAAAATTATCTCCATACAAAT ATTTATCCAGTCACTTCAATCTTTCCCAAAGGCCAAACTTCAATGCAGGC AGCCTATCAAGGAAATGCACGGACGAATCCTTATGTATCCTATGAATTTC TATCTTTCAGCTTTCGTTGTTTTTGGGATTCCAACCGTCAAGAGAAGTAA AGCTTATTACGTCATCCAAACGGTATCTTCCTTGCTCAAACacatgaaaa tttcagaaaggaAAAATGTTGTCATCGTCATTTTTGTGGCAGATCTTGAC GATAATTTTCTTAGGAAAGTCGTAAAAGATGTTCGACAGANAATTGCACt taaaaaccatccccactaaattttttaaccttggaacaatagaatttcta tacctattgggattttgatagaaattttgatTCCCGatgagaaaaaagtt ccaccggggctgttaGACAgggtatttgaaaatattaaagtgAAACCTTT CAAGTAACGAAGTCAACTTTTCAAGCGGTTGCTTTCCTGGCTATTACATA AACCTATCATCAATATTGTTGTTGATTTTTCGGAATAAAGGAGTCAACAA ATGATCATATTCATCTAAATCTGAGGTTCGGGACTTAAAAGTAAAATCCT TCTAGGTACACCTCCAAATGTAGATTGTAGACATATAAGACAAAACATTC TACTCAGGACCATATAGAAGGAATCCTAACTTGATAAATATTCAATACCT TAAACTATTTGATATTGTAACCTTCTAatatgattttcttttcttttcaa aaggtTTTGCTGGAATACACGACATTGAGAAGTATTTCAAGTCAATCAAT TTGAAACTTGGTCAGAAACGAGTAGGGAAAGGTAAAATTATCTCCATACA AATATTTATCCAGTCACTTCAATCTTTCCCAAAGGCCAAACTTCAATGCA GGCAGCCTATCAAGGAAATGCACGGACGAATCCTTATGTATCCTATGAAT TTCTATCTTTCAGCTTTCGTTGTTTTTGGGATTCCAACCGTCAAGAGAAG TAAAGCTTATTACGTCATCCAAACGGTATCTTCCTTGCTCAAACacatga aaatttcagaaaggaAAAATGTTGTCATCGTCATTTTTGTGGCAGATCTT GACGATAATTTTCTTAGGAAAGTCGTAAAAGATGTTCGACAGGACTTTAC AGGCGAAGTTAAAGACGGTATCATTCAAGTGGTTGCTCCTGATAAAGCCT ACTATCCTAAGAATCTGGATAATTTGCCAAGACTTTTTGGTGATGAACAA GATCGAGTCCGCTGGAGATCGAAGCAGTGCCTCGATTATTCATATTTGTA TTATTACTGTAAAGATATGGCGCAATATTTTGTTCAGCTTGAAGATGATA TAATTGCTGTTGATGATTATATGGGGAAAATGCGGGAATTTATAACGAAA AACGAGAAACTTCGTTGGTCGGTCCTTGAGTTCGGTGCCCGAGGATTTAT CGGAATGACTTATCGGGGAGAACATCTAGAATCGTTGGCAAAGTTTACCA GATATTTCTTTTGGACCATGCCAGTCGACTGGCTTTTTCGAGTTTATAAC AATAtctttttatatcaaaatccTAAGAGCTTTCGTACAAGCGAACCTTT GTTCTTACATATCGGAAAGTTCTCTTCCTTAGATGGCCAAACGAGGTCAA ATCTTATAGATCTGCCACTGGTCGGGAGACGTCGATTTCAATTGAGAAAC GGAAATCCACCAGCTATCATCAAGTCTGACTTGAAAGACTTTTATATGAA GAATTTCTTAGAAAACCCATATTCCAAAAAAGGGGCGATGTGGAGTAAAA CACCTCACAATGGAGATACTATTACAATTATGTTTAATTCGactcaaaaa gtcaaaagaatTGTTTTCGTCAGTGGGTTAGAAGATTATAAAAAAGACAG CTTCTATGAAACTGAATTATACATCTCTCAAATGAGAGGTAATGCGAATT CGAAATGTGGGAAGTTTGAGCTGGTGAAATTTTACAAAGAAGCAATAGTT GATATTACTTTTGATGAACCTAAAGAAAACGTTTGGTGTGTCAAACTGGA GTTGACAACTGTCAAGAAAACGAAAGGAATTCCAAACTGGTTGATTATTG AAGAAATTGCTATTCTTATTAGTTGATTTACAATATTTATATACTAAGTG TATAACTACTATGTTTCGTCCTTTGGGCTTAGAATTCAATCTTATTACcc tcccccaccatccaaagggctttatTGTGCacatcataagccctttgggT AGTAAAGGGGAAACTATAGACTGGTTTAATCccaaagaacgaaaaattgc CCTTTAAGACCGATCAAAACTCGAAAAATCGCATATTtcatgttttgtga cgtcatttgggcccTACATTACGTCATTGAAAGGGTAATAAATTCTttac ttcactgaaatcaatttgtcatttaccCAAAAGATTCTCTCAATGACTTC CGATCCAATGCGGGGTCAtccattgcttaaatccttctcaaactcgaaat attgtatttttcaggttttgataACGTCATTGGACCCAAAATGTCTCAAT TTGGATATATCATTTTTCgaaagtttctatatacccACTCTGACCCCTCC AATTTATTCTCTATTAAATTCTAGATCCAATGAGGgttcaacgacctccc aaccgCTATTCAATCGCGCGATATCAcaattttcctgttttgatgacgtc ttcaactgaaaacgcctgaaaatttagtcaaattataaagtcacactcaa gcctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036366XLOC_036366Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057655-exon-scaffold_297-1491911889:92459..92588TCONS_00057655-exon-scaffold_297-1491911889:92459..92588Clytia hemisphaericaexon
TCONS_00057655-exon-scaffold_297-1510915933:92459..92588TCONS_00057655-exon-scaffold_297-1510915933:92459..92588Clytia hemisphaericaexon
TCONS_00057655-exon-scaffold_297-1575043694:92459..92588TCONS_00057655-exon-scaffold_297-1575043694:92459..92588Clytia hemisphaericaexon
TCONS_00057655-exon-scaffold_297-1491911889:93142..93288TCONS_00057655-exon-scaffold_297-1491911889:93142..93288Clytia hemisphaericaexon
TCONS_00057655-exon-scaffold_297-1510915933:93142..93288TCONS_00057655-exon-scaffold_297-1510915933:93142..93288Clytia hemisphaericaexon
TCONS_00057655-exon-scaffold_297-1575043694:93142..93288TCONS_00057655-exon-scaffold_297-1575043694:93142..93288Clytia hemisphaericaexon
TCONS_00057655-exon-scaffold_297-1491911889:94812..94889TCONS_00057655-exon-scaffold_297-1491911889:94812..94889Clytia hemisphaericaexon
TCONS_00057655-exon-scaffold_297-1510915933:94812..94889TCONS_00057655-exon-scaffold_297-1510915933:94812..94889Clytia hemisphaericaexon
TCONS_00057655-exon-scaffold_297-1575043694:94812..94889TCONS_00057655-exon-scaffold_297-1575043694:94812..94889Clytia hemisphaericaexon
TCONS_00057655-exon-scaffold_297-1491911889:95022..96813TCONS_00057655-exon-scaffold_297-1491911889:95022..96813Clytia hemisphaericaexon
TCONS_00057655-exon-scaffold_297-1510915933:95022..96813TCONS_00057655-exon-scaffold_297-1510915933:95022..96813Clytia hemisphaericaexon
TCONS_00057655-exon-scaffold_297-1575043694:95022..96813TCONS_00057655-exon-scaffold_297-1575043694:95022..96813Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:92459..96813 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (2.3568 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0.107295 0 0 0.0556342 0 0 0 2.3568 1.48849 1.1386 1.60403 0.217193 0.281771 1.18989 1.13524 0 0.163398 0.0251846 0.163938 0.34715 0.39597 0 0 0.0957502 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057655 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
200400600800100012001400160018002000Expect = 6.29e-53 / Id = 32.76SequenceMGT4A
Match NameE-valueIdentityDescription
MGT4A6.295e-5332.76Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglu... [more]
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