TCONS_00057681 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057681
Unique NameTCONS_00057681
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length928

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057681 ID=TCONS_00057681|Name=TCONS_00057681|organism=Clytia hemisphaerica|type=transcript|length=928bp
TCTGGACAGTTGTCAACTCCAGTTTGACACACCGAACGTTTTCTTTAGGT
TCATCAAAAGTAATATCAACTATTGCTTCTTTGTAAAATTTCACCAGCTC
AAACTTCCCACATTTCGAATTCGCATTACCTCTCATTTGAGAGATGTATA
ATTCAGTTTCATAGAAGCTGTCTTTTTTATAATCTTCTAACCCACTGACG
AAAACAattcttttgactttttgagtCGAATTAAACATAATTGTAATAGT
ATCTCCATTGTGAGGTGTTTTACTCCACATCGCCCCTTTTTTGGAATATG
GGTTTTCTAAGAAATTCTTCATATAAAAGTCTTTCAAGTCAGACTTGATG
ATAGCTGGTGGATTTCCGTTTCTCAATTGAAATCGACGTCTCCCGACCAG
TGGCAGATCTATAAGATTTGACCTCGTTTGGCCATCTAAGGAAGAGAACT
TTCCGATATGTAAGAACAAAGGTTCGCTTGTACGAAAGCTCTTAggattt
tgatataaaaagaTATTGTTATAAACTCGAAAAAGCCAGTCGACTGGCAT
GGTCCAAAAGAAATATCTGGTAAACTTTGCCAACGATTCTAGATGTTCTC
CCCGATAAGTCATTCCGATAAATCCTCGGGCACCGAACTCAAGGACCGAC
CAACGAAGTTTCTCGTTTTTCGTTATAAATTCCCGCATTTTCCCCATATA
ATCATCAACAGCAATTATATCATCTTCAAGCTGAACAAAATATTGCGCCA
TATCTTTACAGTAATAATACAAATATGAATAATCGAGGCACTGCTTCGAT
CTCCAGCGGACTCGATCTTGTTCATCACCAAAAAGTCTTGGCAAATTATC
CAGATTCTTAGGATAGTAGGCTTTATCAGGAGCAACCACTTGAATGATAC
CGTCTTTAACTTCGCCTGTAAAGTCCTG
Run BLAST on NCBI

transcript from alignment at scaffold_297:95198..99585-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057681 ID=TCONS_00057681|Name=TCONS_00057681|organism=Clytia hemisphaerica|type=transcript|length=4388bp|location=Sequence derived from alignment at scaffold_297:95198..99585- (Clytia hemisphaerica)
TCTGGACAGTTGTCAACTCCAGTTTGACACACCGAACATTTTTTTTAGGT TCGTCAAAAGTAATATCAACTATTGCTTCTTTTTAAAATTTCACCAGCTC AAACTTCCCACATTTCGAATTCGCATTAACTTTCGTTTGAGAGATGTATA ATTTAGTTTCATAGAAGCTGTCTTTTTCATGTCCATCCATTCCGCTAGAG ATAAAGATCCTCTTGATTTTCTGTGGAAAATTAAACATTATCATCAGTGT GTCACCATCCTTAGGTTTTGTTGCCCACAATACACCTTTGCTCGAGTATG GGTTCTCTAACACATTGCTTTTATAGAATCCCGATAAATCCGATTCTATT TCGGCAACGGGATTTCCTTTTACCGATTGGAATTGTCGTCGACCAACTAT CGGGATATCCTATAAATCCTCGAGTTTTCTCACTTGACCATCCAAGGATG AGAATTTACCGACATGCAAGAAAACAGGTTTCTTTATGCGAAAATTCTTT GGATTTTTATACAAGTAGATATCATTATAAACTCGAAAAAGTAAATCAAC TGGCATGGTCCAAAAGAAATATCTGACAAATTTTGCTAACGATTCTAAAT GTTCACCCCGATAAGTCATTCCGATAAATCCTCGGGCACCGAACTCAAGG ACCGACCAACTGCGTTTCTCGTTTTTCGTTATAAATTCCCGCATTTTCCC CATATAATGATCAACAGCAATTATATCATCTTCAAGTTGAACAAAATTTT GCGCCATATCCTTACAGTAATAATACAAATATGAATAATCGAGGCACTGC TTCGATCTCCAGCGGACTCGATTTTTTTCATCGCCAAAAAGTCTTGGCAA ATTATTCAGATTATTAGGATAGTAGGCTTTATCAGGAGCGACCACTTGAA TGATACCGTCTTTAACTTCGCCTGTAAAGTTCTGTCGAACATCTTTTACG ACTTTCCTAAGAAAACTATCGTCAAGATCTGCCACAAAAATGACGATGAC AGCATTTTTCTTTTCTGAAATGTTCATGTGTTTGAGCAAAGAGGATACCG TTTGGATGACGTAATAGGCTTTACTTCTCTTGACGGTTGGAATCCCAAAA ACAACGAAAGCTGAAAGATGGAAACTCATAGGATACATAAGGAAGTAAAA TTCGTCTGGTGCATTTCCCTGATAGACTACCTACATTGAAATTTGGCTTT TGGGAAAGATTAAAGTGGCTGGAAAAATATTTGTATGGAGATAATTTTAC CTTTCCCTACTCGTTTCTGACCAAGTTTCAAATTGTTTGACTTGAAATAC TTCTCAATGTCGTGTATTCCAGCAAAACCTTTTGAAAAGAAAAGAAAATC ATATTAGAAGGTTACAATATCAAATAGTTTAAGGTATTGAATATTTATCA AGTTAGGATTCCTTCTATATGGTCCTGAGTAGAATGTTTTGTCTTATATG TCTACAATCTACATTTGGAGGTGTACCTAGAAGGATTTTACTTTTAAGTC CCGAACCTCAGATTTAGATGAATATGATCATTTGTTGANTTATATGGTCC TGAGTAAAATCTTTTGTCTTATATGTCTACAATCTACATTTGGAGGTGTA CCTAGAAGGATTTTACTTGGTAAGTCCCGAACCTCAGATTTAGATGAATA TGATCATTTGTTGACTCTTTTATTCCGAGAAATCAACAACAATATTGATG ATAGATTTATGTAATAGCCAGAAAGCAACCACTGTAAAGTTACTTTTTGA AAAGTTGACTTCGTTACTTGAACGGTTCCACGCTAAATTATTTCAAAGAT CTCTGTCTAACATTGCATTCCACATCTTATACATTTTCTTTACTTCATCC ACAAATTTTTCTGCTTTGATTTATAGAGTAGATAAAAAACTATAATTCCC AATGAAGTTATGAAAATTTCACGAATTTCACTTTTTTATCTGGACACATC GCAACTATATAGCCTGGTTGTTTTACCACATTAAAGAGAAAGATTTATGA CATCCAGTTATCTTAGATTCAGCTTTAACATTTGACGATGAGAGATTTCT TCAAAAATACAAGCCGATCAGTGACTCATCTAATTCATTTGATGTTTCTA ATACTACACTTACATAAAACAAAAACTCTTCAAAGCATTTTCTAGGCCTA ATTAATCTGTTCCATTAAAGACACAGTAAAATGATGATTGATGCAATTCA ATTAATATATTTGGTCATATGAAAGCTCTTAATGAAAATTCCTCGAAACA AAGAACAATGAAATCACATTTAAGGGCTCTGACCATGGTCAAGAGATCGG TTATGAGCTGGTTATGAGTTTTGAGGACAAAACTTTTGTTTTGAGCTCCT TGACACTTTTAACAAAAAATTGTCTATATAATTTGTTTCTGAATTTGTTC TATCAGGAGTCATTAACAATTTACAAAAATGACGTTATAACCTTAAAAAA TTTTGTACCCTCTTTTACTATAAGTGCTTAGTTTTATTGGGTAATTAACC TTTTTGTTCCAAATTTTTTCTAAAGACCATCTAAAATATTTTGGAACAAT TTTCTTAATTGATGTATCAAAAGGTATGATTCTTTTTACGAAAATACTCG AATGAAAAATTGGTCAATAACCATTATTTTCAAGATTTTGAAACGAAAAA ATTTCCCAAAAATATATTTTTCGTTCGGCAAAAGATACGGCGATCTATTT CATATTTTCATTCAAGTTGGTGACCCCTCATTTGATCGAAAATTTTATGG AGAATATGATGAGAGGTTTTATAAGGCTTGAGTGTGACTTTATAATTTGA CTAAATTTTCAGGCGTTTTCAGTTGAAGACGTCATCAAAACAGGAAAATT GTGATATCGCGCGATTGAATAGCGGTTGGGAGGTCGTTGAACCCTCATTG GATCTAGAATTTAATAGAGAATAAATTGGAGGGGTCAGAGTGGGTATATA GAAACTTTCGAAAAATGATATATCCAAATTGAGACATTTTGGGTCCAATG ACGTTATCAAAACCTGAAAAATACAATATTTCGAGTTTGAGAAGGATTTA AGCAATGGATGACCCCGCATTGGATCGGAAGTCATTGAGAGAATCTTTTG GGTAAATGACAAATTGATTTCAGTGAAGTAAAGAATTTATTACCCTTTCA ATGACGTAATGTAGGGCCCAAATGACGTCACAAAACATGAAATATGCGAT TTTTCGAGTTTTGATCGGTCTTAAAGGGCAATTTTTCGTTCTTTGGGATT AAACCAGTCTATAGTTTCCCCTTTACTACCCAAAGGGCTTATGATGTGCA CAATAAAGCCCTTTGGATGGTGGGGGAGGGTAATAAGATTGAATTCTAAG CCCAAAGGACGAAACATAGTAGTTATACACTTAGTATATAAATATTGTAA ATCAACTAATAAGAATAGCAATTTCTTCAATAATCAACCAGTTTGGAATT CCTTTCGTTTTCTTGACAGTTGTCAACTCCAGTTTGACACACCAAACGTT TTCTTTAGGTTCATCAAAAGTAATATCAACTATTGCTTCTTTGTAAAATT TCACCAGCTCAAACTTCCCACATTTCGAATTCGCATTACCTCTCATTTGA GAGATGTATAATTCAGTTTCATAGAAGCTGTCTTTTTTATAATCTTCTAA CCCACTGACGAAAACAATTCTTTTGACTTTTTGAGTCGAATTAAACATAA TTGTAATAGTATCTCCATTGTGAGGTGTTTTACTCCACATCGCCCCTTTT TTGGAATATGGGTTTTCTAAGAAATTCTTCATATAAAAGTCTTTCAAGTC AGACTTGATGATAGCTGGTGGATTTCCGTTTCTCAATTGAAATCGACGTC TCCCGACCAGTGGCAGATCTATAAGATTTGACCTCGTTTGGCCATCTAAG GAAGAGAACTTTCCGATATGTAAGAACAAAGGTTCGCTTGTACGAAAGCT CTTAGGATTTTGATATAAAAAGATATTGTTATAAACTCGAAAAAGCCAGT CGACTGGCATGGTCCAAAAGAAATATCTGGTAAACTTTGCCAACGATTCT AGATGTTCTCCCCGATAAGTCATTCCGATAAATCCTCGGGCACCGAACTC AAGGACCGACCAACGAAGTTTCTCGTTTTTCGTTATAAATTCCCGCATTT TCCCCATATAATCATCAACAGCAATTATATCATCTTCAAGCTGAACAAAA TATTGCGCCATATCTTTACAGTAATAATACAAATATGAATAATCGAGGCA CTGCTTCGATCTCCAGCGGACTCGATCTTGTTCATCACCAAAAAGTCTTG GCAAATTATCCAGATTCTTAGGATAGTAGGCTTTATCAGGAGCAACCACT TGAATGATACCGTCTTTAACTTCGCCTGTAAAGTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036373XLOC_036373Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057681-exon-scaffold_297-1575043694:99549..99585TCONS_00057681-exon-scaffold_297-1575043694:99549..99585Clytia hemisphaericaexon
TCONS_00057681-exon-scaffold_297-1575043694:95198..96088TCONS_00057681-exon-scaffold_297-1575043694:95198..96088Clytia hemisphaericaexon
TCONS_00057681-exon-scaffold_297-1510915933:99549..99585TCONS_00057681-exon-scaffold_297-1510915933:99549..99585Clytia hemisphaericaexon
TCONS_00057681-exon-scaffold_297-1510915933:95198..96088TCONS_00057681-exon-scaffold_297-1510915933:95198..96088Clytia hemisphaericaexon
TCONS_00057681-exon-scaffold_297-1491911889:99549..99585TCONS_00057681-exon-scaffold_297-1491911889:99549..99585Clytia hemisphaericaexon
TCONS_00057681-exon-scaffold_297-1491911889:95198..96088TCONS_00057681-exon-scaffold_297-1491911889:95198..96088Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:95198..99585 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (3.52065 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.180118 0 0.0775597 0 0 0 0 0.0129761 2.3167 3.52065 1.10235 2.69885 0.255692 0.00221151 1.27119 1.76128 0.716537 0.191083 0.390693 0 0.973641 0.794916 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006759Glyco_transf_54
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016758transferase activity, transferring hexosyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0016020 membrane
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
100200300400500600700800900Expect = 4.98e-39 / Id = 31.77SequenceMGT4A
Match NameE-valueIdentityDescription
MGT4A4.982e-3931.77Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglu... [more]
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