TCONS_00057684 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00057684
Unique Name	TCONS_00057684
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1772

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_297:121608..126555-

transcript sequence

>TCONS_00057684 ID=TCONS_00057684|Name=TCONS_00057684|organism=Clytia hemisphaerica|type=transcript|length=1772bp
AAACGATTTGATTTTCGAAACATTTATATTTCATTTAGCTACAATTTGAG
GAAGATGCGATGGAATTTGTTGGAACATTGAAAGGAGCCAAGGGAGAGCA
AGGCATTATGGGATTGAAAGGCGAGGAAGGAAAACAAGGACCTCAAGGAG
AACAGgGAATACAAGGTATCCAAGGGGAAAAAGGTGAAAGAGGTGCTAGA
GGAGAAAAGGGTGAACAAGGAATCGGTGAAGTTGGACCAAAAGGTGAAAA
AGGGGACAGTCTGAAAATATCAGAAGTTGCTCAAGAGGTTATTGGTTTGG
CAGAAAGAcAAATTCGAAAATTGAAGGGCGATCAAGGACCTCCAGGTGAT
CAAGGGCCACGTGGTCTTCCTGGTGTTTCAGGGCCGCGAGGACCCAAAGG
AGAAGCTGGAGTTTCTACAGGAAGTAAAGCGAATGTGATATTAACGGATC
AAGATTTGGATATAATGGAAGATATGTTCGGCGTTGGTTCTCTTGCATTT
GTTATCAGTACAAATAATTTGTTCATCAAATCTCTCAAAGGTTGGATCAG
CATCCCCACCGAATCGAAATCAGGTCTTCTTGGCAAACTGACCACGGATA
GCAACGAGATTGCATCAGGTCCAACCGTGATCGAATTGACCAAGAAACAA
ATCACCGAACCCACTGATGTTGATAAGAAGTTGATCAAAGAAACCTTGAT
TGTTCCACAGCCTGGGATTATGGCAAAAAGACCTTACTTGATGTTAATCG
CTTTGAACGAGCCTTATTCTGGACGAATGGGAGGTTTAGCAAAGATTGAT
AAAATGTGTTCAACACAAGCCAAAGCAGCTGGATATTTCGGATTGAAATT
CCACACCTTGATCTCAGACAACTATAATGATATCGCAAATATGATTCCTT
TCCGAAGTCGTAAAAAACCAGTCGCTAATACCAGGGGTGAGCAGATCTTC
CCACGTGCAGAAGATATCTACAAGAGTGATAATTACACTGCATTTAATCC
AAACATCCCAATCTATTCTTTCGACCAAAAAGATGTTCGCCGACATGCTT
CGTGGCCggtgaagaaattttggcacggTTCACACGCTAACGGAAAACTC
CACTCAACGAAAATGAATTGTCGCAACTGGCGTTCTGAGCAACCTTTCCA
TAAGGCAACCGCATCTTCCATTCTTACCTACACTCCTGCATTGAATGAGT
TAGACGTACGCTGCGACCAAAAACTCATCGTCTTGTGCTTACAAGTAAGA
TGAGGTCAAGTCCCAGGTTAGATGACATCAATTCTCTATAAAGGGAATCT
AGTTGGGAATTTCGATGACGAGAAACACCACGGTATGAGAGAAAAGCGTG
GGCGATGAAATTCTATATATACCTACCTGTCTTTAATGTATAAAACGTGA
CCTTGAATAAGATAGTGGTAAAAAATTGGGTCTTACACATCACTACACTA
CAAAATGATAATTTATAATAAGCAATATTTTTTAGATAGTTTTATAGCAG
ATAGagcttttgttgaaaattttattctaaataatTTTATCATTGTCTTT
GGCCtaatttttggttaaaaaattcagaaCCAATCGAGAACTAGTTTGAG
TCCAAAATCGAACATTTTCAGGACCAAAGAGAATCTATGGATTAGACTTT
ttgttatttatattttattttctccttgtgtacatatttaattatttttt
tcaaaataaaatagtttttggaaataaaaaaattattttcaaaaaaagta
agAAAGAAATTTAGAAATCTAG

Run BLAST on NCBI

transcript from alignment at scaffold_297:121608..126555-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00057684 ID=TCONS_00057684|Name=TCONS_00057684|organism=Clytia hemisphaerica|type=transcript|length=4948bp|location=Sequence derived from alignment at scaffold_297:121608..126555- (Clytia hemisphaerica)
AAACGATTTGATTTTCGAAACATTTATATTTCATTTAGCTACAATTTGAG
GAAGATGCGATGGAATTTGTTGGAACATTGAAAGGAGCCAAGGGAGAGCA
AGGCATTATGGGATTGAAAGGCGAGGAAGGAAAACAAGGACCTCAAGGAG
AACAGGTAAGTTATATAGAATCTCTGTTTAGTTTGTCTATTATCATTTTT
ATCAAGAGTTCGCGAATAGAGCCTTTGGTTTGGGTTATAACCACTATAGC
CAACTTAGTGAGGTTAACTCTCGCCCAAGTGAAGGTCCGGCAACATTATC
ACTTTAGAAGTTCAAGAAAGTATTTCTCAAAAAGTTAAAATCGCCCATGG
GTGTTTTGGTCGATGCAGGCTACTTTAGATACTTACCACCTACCTGAATC
GTTGGGTTTTTCCTTCAATATGTGGATATATATATATTTCTTCATTTTCT
TCAGGGAATACAAGGTATCCAAGGGGAAAAAGGTGAAAGAGGTGCTAGAG
GAGAAAAGGTAGAGAAATATATCTTACTCGTTTATGACAAAGGAGGATTT
GCTTTCAAGCAATTTAANATATTTCTTCATTTTCTTCAGGGAATACAAGG
TATCCAAGGAGAAAAAGGTGAAAGAGGTGCTAGAGGAGAAAAGGTAGAGA
AATATATCTTACTCGTTTATGACAAAGGAGGATTTGCTTTCAAGCAATTT
AAAATCACTAATCTTAATACCACGCATGCAGCTGTCTAGAAGAAGCCATT
TCACACGCGATTTCAATTAATATTTAAGGCCTACATAATAATTTGGGCCT
TATCTAAAACACTATAATTGTCTTAAAACAAACATCATTTTTCACGTTAT
TGATTAGCAAACTCCATTTCCTGATTAGGGTGAACAAGGAATCGGTGAAG
TTGGACCAAAAGGTGAAAAAGGGGACAGTCTGAAAATATCAGAAGTTGCT
CAAGAGGTTATTGGTTTGGCAGAAAGACGTAAGTTTATTTTTCTCCAATA
CTTAGAGGGGTTCTGATAAATTCCGATGGTGGATTGGCGGATTGGCGGCC
GCCCACGCTAAAGCTCTAAAAGGAGCGGGCCAATTTCCCATCGGAGAGGA
ATGATAGTCGGCCTTTGATGTACTGCATTCCCAGTCAGGTTCAGCCACCC
TTGTGCGTAAGGCTGAAAATATTTAGGTTAGACCCGTTAATCCCCGAAAA
CATCGGCTGGGGTCGAAGACTCCCGCTGCAAAATCCCTGACGCAGTCTTG
CAAAATTCCGTAATCCAAACCTTCCACATATTGAAAATTTCCCGACCTTC
AGAGTTTTAGCGAGTGCAGATTCCCAGCTAGCACACAACGTTATTTCAAT
GTTTTTCCGTATAACGTTAGACGGATGTTGAGACAACGTTGCGTGCCTGC
AGGTTTTCCCTTCCCACTACCTTCCTCCTGAACAGATTAACTTACTAGCT
TGTAATTGAGGTTTTTGTATTTATCACAGAAATTCGAAAATTGAAGGGCG
ATCAAGGACCTCCAGGTGATCAAGGGCCACGTGGTCTTCCTGGTGTTTCA
GGGCCGCGAGGACCCAAAGGAGAAGCTGGAGTTTCTACAGGAAGTAAAGT
AAGTAGAAATATGTCATCAAAAATATACTTTCTAAATAAAATATTCGCTT
CCCGTTGTATTGAAAACTATTTTCAAAATTGCTCCCGATAACGTCGTTAT
AATTTGTAAATGGCTATTAGAGCTTTTTATCCGATAAGCGATGTCGGATA
TATCCTCTTAATCGATGCATCTAGGTAGACAGAACGATACCCAAATTCGT
TAAAACGCTGATTTCAGAAGCACTATCAAAGTTTTTCCCAACTCCTATTC
TTTTTAATATAATTACAATGACAAATTGTTGTTTTCTGTAGGCGAATGTG
ATATTAACGGATCAAGATTTGGATATAATGGAAGATATGTTCGGCGTTGG
TTCTCTTGCATTTGTTATCAGTACAAATAATTTGTTCATCAAATCTCTCA
AAGGTTGGATCAGCATCCCCGTAAGTTCTTTGGTTTTGATTGAGATATAT
TCATTCTCACCAGTTTTTTGTGAGACTTATCTCATTTATTTTATCCCAAG
TCTGCCCTTTAGATTCTTATACACTTTATACAAGCTTGAATATTTCCATA
ATACCTGTGAGCCATGTAAGCCATGCATTTTTTGAGATCTAAACCCTCAA
ATATCTTTTTCAACCTTAAGTAAATGTAAAACTTAAAACTTTACTTGTAA
TTTTATCCCATTTCTATCACCATAGACCGAATCGAAATCAGGTCTTCTTG
GCAAACTGACCACGGATAGCAACGAGATTGCATCAGGTCCAACCGTGATC
GAATTGACCAAGAAACAAATCACCGAACCCACTGATGTTGTAAGTGGTGG
CTCTTCTTTCCTTGGCAATTTCTTTTGCTACTTTTATTCGTATTGAGTCA
CGACAGTAGAAATCAATCAATCAATTGTAAACATGATTCAAAGAAATCGA
TTTTTTAATTAAAGTTTTGCCACATAAAATACTAAGGAGGCCCTAAACTA
AAAATTGCATCGTAGACCAAATTCATAGAAATTTCGAATAAAGTTTCTCC
AATTGGACTATAGAGTTTCACTGGATTGTAAATTTTCGTCTTGTATCATC
ATAGGATAAGAAGTTGATCAAAGAAACCTTGATTGTTCCACAGCNTGTTC
TGTATCATCATAGGATAAGAAGTTGATCAAAGAAACCTTGATTGTTCCAC
AGCCTGGGATTATGGCAAAAAGACCTTACGTAAGTTAACTTTTGCAAAAA
AAATATTTCTTTTTTTTGAAAATCAAAACATATCACTACAGGCGGCTTGT
ATTGTCCTTGTCGTTGATTGATGTTTGACCCTGCCTTCATTTCGAACAAT
CTTTTCGACAGAAATTTCCAATCTTTCCACTTGCATCAACCGCTATTCAA
CCGACACCTCTGAATTAAGAAATGACTTAAAAAATCTTCCCTTTTCAGTT
GATGTTAATCGCTTTGAACGAGCCTTATTCTGGACGAATGGGAGGTTTAG
CAAAGATTGATAAAATGTGTTCAACACAAGCCAAAGCAGCTGGATATTTC
GGATTGAAATTCCACACCTTGATCTCAGACAACTATAATGATATCGCAAA
TATGATTCCTTTCCGAAGTCGTAAAAAACCAGTCGCTAATACCAGGGTAT
GTACCGGAGATTCCAGTTAACTTTACGTTGTGCTGTTTAAGAATCAATGA
TAATTGTATTATAATATAAGATCTTCTTTTCTTGATATTTCTATTTCTCC
ACAAACCGATCTTCTCTCTAATCAGACAATCTCTTTCAAATGAATTATTA
TTATTCACCTTAGCTAGTTTTTTTTCATTCTTGGTTTCGACCTCCAATGT
CATTTGAACATCTACCTAGCCTGGAAGCCGACTTCCTGACCAGGGATATA
TTCAAATGATTCGAGGTTTAAGAACCTTCACGAAGAAGGAAAATACTTAC
TATCTTACTATCTTCTTACAGGGTGAGCAGATCTTCCCACGTGCAGAAGA
TATCTACAAGAGTGATAATTACACTGCATTTAATCCAAACATCCCAATCT
ATTCTTTCGACCAAAAAGATGTTCGCCGACATGCTTCGTGGTAAGATTAA
GATGTTTCTTTTTTGTTAAAAAGATACAGAAAATAGGTTCTAATGACAAG
ATCCCGAAAAAATAGAACAGTCTTAAAAATCACAAAACTATAGAATCACT
TTCCAATCTCGTCCCCGTGTATCCCAGGCTTTATTTACGTTACTTATGGA
CGTCATAGAGAATATTTAGCGCCATATAGTTGAAGCATAAAAAAGCTGAT
AATACCAGGGAACGAGGTTGATCACGTCCTTCAATCAAAGTGCTGATTGT
GGTGATTGACGTGATGAAAGCCTTTCGCTAGCGCTATCAGACTCTTAGCG
AACTAAGAGACTCTACAACCGAGAATTAAGTTTGACCTCCCTATCTCTCT
CTATTTATGACTTGGCTCCCAAAAATATAAAAGCTTCTTTTTCCTTCCAA
GACCTTGAATAAGGTGCAATATAGTCAGTCACCTCATTGAAAAAAATACT
AATGTAAAGGAGGTCTTCTCCTCCTCTCGATAACATTCTGTTATACAATT
GATTTTTCACTCAAACTGGACCTCTCTCGAATTCTAATGAAATGCACTGT
ATAACACTTCTACTTGAACTTATTTTGTAGGCCGGTGAAGAAATTTTGGC
ACGGTTCACACGCTAACGGAAAACTCCACTCAACGAAAATGAATTGTCGC
AACTGGCGTTCTGAGCAACCTTTCCATAAGGCAACCGCATCTTCCATTCT
TACCTACACTCCTGCATTGAATGAGTTAGACGTACGCTGCGACCAAAAAC
TCATCGTCTTGTGCTTACAAGTAAGATGAGGTCAAGTCCCAGGTTAGATG
ACATCAATTCTCTATAAAGGGAATCTAGTTGGGAATTTCGATGACGAGAA
ACACCACGGTATGAGAGAAAAGCGTGGGCGATGAAATTCTATATATACCT
ACCTGTCTTTAATGTATAAAACGTGACCTTGAATAAGATAGTGGTAAAAA
ATTGGGTCTTACACATCACTACACTACAAAATGATAATTTATAATAAGCA
ATATTTTTTAGATAGTTTTATAGCAGATAGAGCTTTTGTTGAAAATTTTA
TTCTAAATAATTTTATCATTGTCTTTGGCCTAATTTTTGGTTAAAAAATT
CAGAACCAATCGAGAACTAGTTTGAGTCCAAAATCGAACATTTTCAGGAC
CAAAGAGAATCTATGGATTAGACTTTTTGTTATTTATATTTTATTTTCTC
CTTGTGTACATATTTAATTATTTTTTTCAAAATAAAATAGTTTTTGGAAA
TAAAAAAATTATTTTCAAAAAAAGTAAGAAAGAAATTTAGAAATCTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036375	XLOC_036375	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_297	supercontig	scaffold_297:121608..126555 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.830769	0.0101791	0	0	0.651058	0.0918383	0.732189	0.80575	0.000132261	5.89438e-06	0	0.000106407	0.0209156	1.65168e-09	0.0115511	0.3088	0.00144144	5.52847e-09	1.76967e-07	6.83256e-06	1.05797	2.7216	0	1.03182e-05	1.05641	0.672782	0.0396961	1.92225	2.83892	0.0785636

Blast

[Close]

BLAST of TCONS_00057684 vs. Swiss-Prot (Human)
Match: COIA1 (Collagen alpha-1(XVIII) chain OS=Homo sapiens GN=COL18A1 PE=1 SV=5)

HSP 1 Score: 105.916 bits (263), Expect = 1.550e-23
Identity = 64/173 (36.99%), Postives = 88/173 (50.87%), Query Frame = 3

Query:  729 RPYLMLIALNEPYSGRMGGLAKIDKMCSTQAKAAGYFGLKFHTLISDNYNDIANMIPFRSRKK-PVANTRGEQIFPRAEDIYKSDNYTAFNPNIPIYSFDQKDVRRHASWPVKKFWHGSHANGKLHSTKMNCRNWRSEQPFHKATASSILTYTPALNELDVRCDQKLIVLCLQ 1244
            +P L L+ALN P SG M G+   D  C  QA+A G  G  F   +S    D+ +++    R   P+ N + E +FP  E ++ S +     P   I+SFD KDV RH +WP K  WHGS  NG+   T+  C  WR+E P     ASS+L     L +    C    IVLC++
Sbjct: 1578 QPVLHLVALNSPLSGGMRGIRGADFQCFQQARAVGLAG-TFRAFLSSRLQDLYSIVRRADRAAVPIVNLKDELLFPSWEALF-SGSEGPLKPGARIFSFDGKDVLRHPTWPQKSVWHGSDPNGR-RLTESYCETWRTEAPSATGQASSLLG-GRLLGQSAASCHHAYIVLCIE 1746

The following BLAST results are available for this feature:

BLAST of TCONS_00057684 vs. Swiss-Prot (Human)

BLAST of TCONS_00057684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
COIA1	1.550e-23	36.99	Collagen alpha-1(XVIII) chain OS=Homo sapiens GN=C...	[more]

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TCONS_00057684 (transcript) - C. hemisphaerica