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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057740 ID=TCONS_00057740|Name=TCONS_00057740|organism=Clytia hemisphaerica|type=transcript|length=1176bp
TTTGAATACTCTTGAAAGAAAGGAGCAAATTATATCATGGGTTGGATAAA
AAAAACCTTCATCTTTGTCCTTCCAATACTTTCTTACTACATTTACAAAA
TTGTAAAAGCTAACttcttgatttttgttttaatcACAAGCCAGATTTAC
CCAAGACTTCCAATCGAGAATTTTGCAAAGTTGAATCCTGACATTGCAGA
CTTTGTAACAGGAGATGATCAAATAGTTGATGAATATGATTTTGTGGTTA
TTGGTGCAGGATCTGCAGGAGCTGTTGTTGCCAACCGTTTAAGTGAAAAC
AAATCATGGAAAATACTTCTGCTCGAAGCTGGTGGTGGGGAAAACATGCT
GAGTGAGATCCCTGCAACAACATTTCTTAACATCAAAACATCCATTGATT
GGTACTTTTTATCAGAGCCGGCCAATGATGGAAAAACTTCAACAATCTTT
AAAAATGGACAATTGGCTATGCCAAGGGGAAAGGTTCTTGGAGGAACAAG
CACCATCAATGCGATGGCTTACACACGTGGTAATAAACGAGATTATGATT
CATGGGAAGAGCAAGGTAACCCAGGTTGGGGCTATGAAGATGTTTTACCA
TATTTCAAGAAATCTGAAGACCAAACCAATGAAAAGCTTACTAAAGATAC
AAAGTACCATTCAACAGGTGGCTATCTTACCATTGAAGATGTAGAAAAAG
CTGAGGTTTTTGTTAAATTGATGGACGGCTTCAGTAAGATTTTACCGGAG
AATAAGGATTATAATGGTGAAAAACAATCTGGAACTGTGTTTTATCAAAA
CACGATCAGGAATGGCCAGAGATGCAGTACAGCCAAAGCTTACCTCAAAC
CCAAGAGATCAAATCTTCACGTCATTCCTTTTTCACATGTCCAGAAGATT
TTGACTGATCCTGAAACGAAAACAGCCAAAGGTGTTGTTTATAAGAAGAA
TGGAAAATCCATGACAGTAAAAGCCACGAAAGAAATCATCTTGTCTGCTG
GTGCTTTTGGCTCCCCTCAgATTTTGATGTTATCAGGAGTTGGCCCAAAG
GAGGAATTGGAAAAACATGGAATTCCGCTCATTAAAGAACTTCAAGTTGG
ATACAATTTACAAGATCACGTGAACGTTGGTGTACATATGGTTTTCAATG
AGTCTATTGAACTTCCTTTCGAAGAG Run BLAST on NCBI protein sequence of TCONS_00057740-protein >TCONS_00057740-protein ID=TCONS_00057740-protein|Name=TCONS_00057740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
MGWIKKTFIFVLPILSYYIYKIVKANFLIFVLITSQIYPRLPIENFAKLN
PDIADFVTGDDQIVDEYDFVVIGAGSAGAVVANRLSENKSWKILLLEAGG
GENMLSEIPATTFLNIKTSIDWYFLSEPANDGKTSTIFKNGQLAMPRGKV
LGGTSTINAMAYTRGNKRDYDSWEEQGNPGWGYEDVLPYFKKSEDQTNEK
LTKDTKYHSTGGYLTIEDVEKAEVFVKLMDGFSKILPENKDYNGEKQSGT
VFYQNTIRNGQRCSTAKAYLKPKRSNLHVIPFSHVQKILTDPETKTAKGV
VYKKNGKSMTVKATKEIILSAGAFGSPQILMLSGVGPKEELEKHGIPLIK
ELQVGYNLQDHVNVGVHMVFNESIELPFEE Run BLAST on NCBI transcript from alignment at scaffold_298:164728..166068+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057740 ID=TCONS_00057740|Name=TCONS_00057740|organism=Clytia hemisphaerica|type=transcript|length=1341bp|location=Sequence derived from alignment at scaffold_298:164728..166068+ (Clytia hemisphaerica)
TTTGAATACTCTTGAAAGAAAGGAGCAAATTATATCATGGGTTGGATAAA
AAAAACCTTCATCTTTGTCCTTCCAATACTTTCTTACTACATTTACAAAA
TTGTAAAAGCTAACttcttgatttttgttttaatcACAAGCCAGATTTAC
CCAAGACTTCCAATCGAGAATTTTGCAAAGTTGAATCCTGACATTGCAGA
CTTTGTAACAGGAGATGATCAAATAGTTGATGAATATGATTTTGTGGTTA
TTGGTGCAGGATCTGCAGGAGCTGTTGTTGCCAACCGTTTAAGTGAAAAC
AAATCATGGAAAATACTTCTGCTCGAAGCTGGTGGTGGGGAAAACATGCT
GAGTGAGATCCCTGCAACAACATTTCTTAACATCAAAACATCCATTGATT
GGTACTTTTTATCAGAGCCGGCCAATGATGGAAAAACTTCAACAATCTTT
AAAAATGGACAATTGGCTATGCCAAGGGGAAAGGTTCTTGGAGGAACAAG
CACCATCAATGCGATGGCTTACACACGTGGTAATAAACGAGATTATGATT
CATGGGAAGAGCAAGGTAACCCAGGTTGGGGCTATGAAGATGTTTTACCA
TATTTCAAGAAATCTGAAGACCAAACCAATGAAAAGCTTACTAAAGATAC
AAAGTACCATTCAACAGGTGGCTATCTTACCATTGAAGATGTAGAAAAAG
CTGAGGTTTTTGTTAAATTGATGGACGGCTTCAGTAAGATTTTACCGGAG
AATAAGGATTATAATGGTGAAAAACAATCTGGAACTGTGTTTTATCAAAA
CACGATCAGGAATGGCCAGAGATGCAGTACAGCCAAAGCTTACCTCAAAC
CCAAGAGATCAAATCTTCACGTCATTCCTTTTTCACATGTCCAGAAGATT
TTGACTGATCCTGAAACGAAAACAGCCAAAGGTGTTGTTTATAAGAAGAA
TGGAAAATCCATGACAGTAAAAGCCACGAAAGAAATCATCTTGTCTGCTG
GTGCTTTTGGCTCCCCTCAggtaataattttgtttttaaaaagaatagaA
GTTCCCTGTGCATCTTTAAGtaccaaaattctcaaaaccttaaGTTCGAT
AAGTTTGGACAAGACTTCACCCAAAAGTCAAGCCTAGAACCTTACCTATA
CTAGGTAATGTAATGTGTTTTTTCTCTCATTTCAGATTTTGATGTTATCA
GGAGTTGGCCCAAAGGAGGAATTGGAAAAACATGGAATTCCGCTCATTAA
AGAACTTCAAGTTGGATACAATTTACAAGATCACGTGAACGTTGGTGTAC
ATATGGTTTTCAATGAGTCTATTGAACTTCCTTTCGAAGAG Coding sequence (CDS) from alignment at scaffold_298:164728..166068+ >TCONS_00057740 ID=TCONS_00057740|Name=TCONS_00057740|organism=Clytia hemisphaerica|type=CDS|length=2280bp|location=Sequence derived from alignment at scaffold_298:164728..166068+ (Clytia hemisphaerica)
ATGGGTTGGATAAAAAAAACCTTCATCTTTGTCCTTCCAATACTTTCTTA
CTACATTTACAAAATTGTAAAAGCTAACttcttgatttttgttttaatcA
CAAGCCAGATTTACCCAAGACTTCCAATCGAGAATTTTGCAAAGTTGAAT
CCTGACATTGCAGACTTTGTAACAGGAGATGATCAAATAGTTGATGAATA
TGATTTTGTGGTTATTGGTGCAGGATCTGCAGGAGCTGTTGTTGCCAACC
GTTTAAGTGAAAACAAATCATGGAAAATACTTCTGCTCGAAGCTGGTGGT
GGGGAAAACATGCTGAGTGAGATCCCTGCAACAACATTTCTTAACATCAA
AACATCCATTGATTGGTACTTTTTATCAGAGCCGGCCAATGATGGAAAAA
CTTCAACAATCTTTAAAAATGGACAATTGGCTATGCCAAGGGGAAAGGTT
CTTGGAGGAACAAGCACCATCAATGCGATGGCTTACACACGTGGTAATAA
ACGAGATTATGATTCATGGGAAGAGCAAGGTAACCCAGGTTGGGGCTATG
AAGATGTTTTACCATATTTCAAGAAATCTGAAGACCAAACCAATGAAAAG
CTTACTAAAGATACAAAGTACCATTCAACAGGTGGCTATCTTACCATTGA
AGATGTAGAAAAAGCTGAGGTTTTTGTTAAATTGATGGACGGCTTCAGTA
AGATTTTACCGGAGAATAAGGATTATAATGGTGAAAAACAATCTGGAACT
GTGTTTTATCAAAACACGATCAGGAATGGCCAGAGATGCAGTACAGCCAA
AGCTTACCTCAAACCCAAGAGATCAAATCTTCACGTCATTCCTTTTTCAC
ATGTCCAGAAGATTTTGACTGATCCTGAAACGAAAACAGCCAAAGGTGTT
GTTTATAAGAAGAATGGAAAATCCATGACAGTAAAAGCCACGAAAGAAAT
CATCTTGTCTGCTGGTGCTTTTGGCTCCCCTCAgATTTTGATGTTATCAG
GAGTTGGCCCAAAGGAGGAATTGGAAAAACATGGAATTCCGCTCATTAAA
GAACTTCAAGTTGGATACAATTTACAAGATCACGTGAACGTTGGTGTACA
TATGGTTTTCAATGAGTCTATTGAACTTCCTTTCGAAGAGATGGGTTGGA
TAAAAAAAACCTTCATCTTTGTCCTTCCAATACTTTCTTACTACATTTAC
AAAATTGTAAAAGCTAACttcttgatttttgttttaatcACAAGCCAGAT
TTACCCAAGACTTCCAATCGAGAATTTTGCAAAGTTGAATCCTGACATTG
CAGACTTTGTAACAGGAGATGATCAAATAGTTGATGAATATGATTTTGTG
GTTATTGGTGCAGGATCTGCAGGAGCTGTTGTTGCCAACCGTTTAAGTGA
AAACAAATCATGGAAAATACTTCTGCTCGAAGCTGGTGGTGGGGAAAACA
TGCTGAGTGAGATCCCTGCAACAACATTTCTTAACATCAAAACATCCATT
GATTGGTACTTTTTATCAGAGCCGGCCAATGATGGAAAAACTTCAACAAT
CTTTAAAAATGGACAATTGGCTATGCCAAGGGGAAAGGTTCTTGGAGGAA
CAAGCACCATCAATGCGATGGCTTACACACGTGGTAATAAACGAGATTAT
GATTCATGGGAAGAGCAAGGTAACCCAGGTTGGGGCTATGAAGATGTTTT
ACCATATTTCAAGAAATCTGAAGACCAAACCAATGAAAAGCTTACTAAAG
ATACAAAGTACCATTCAACAGGTGGCTATCTTACCATTGAAGATGTAGAA
AAAGCTGAGGTTTTTGTTAAATTGATGGACGGCTTCAGTAAGATTTTACC
GGAGAATAAGGATTATAATGGTGAAAAACAATCTGGAACTGTGTTTTATC
AAAACACGATCAGGAATGGCCAGAGATGCAGTACAGCCAAAGCTTACCTC
AAACCCAAGAGATCAAATCTTCACGTCATTCCTTTTTCACATGTCCAGAA
GATTTTGACTGATCCTGAAACGAAAACAGCCAAAGGTGTTGTTTATAAGA
AGAATGGAAAATCCATGACAGTAAAAGCCACGAAAGAAATCATCTTGTCT
GCTGGTGCTTTTGGCTCCCCTCAgATTTTGATGTTATCAGGAGTTGGCCC
AAAGGAGGAATTGGAAAAACATGGAATTCCGCTCATTAAAGAACTTCAAG
TTGGATACAATTTACAAGATCACGTGAACGTTGGTGTACATATGGTTTTC
AATGAGTCTATTGAACTTCCTTTCGAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057740-exon-scaffold_298-1491911889:164728..165747 | TCONS_00057740-exon-scaffold_298-1491911889:164728..165747 | Clytia hemisphaerica | exon |
| TCONS_00057740-exon-scaffold_298-1510915933:164728..165747 | TCONS_00057740-exon-scaffold_298-1510915933:164728..165747 | Clytia hemisphaerica | exon |
| TCONS_00057740-exon-scaffold_298-1575043694:164728..165747 | TCONS_00057740-exon-scaffold_298-1575043694:164728..165747 | Clytia hemisphaerica | exon |
| TCONS_00057740-exon-scaffold_298-1491911889:165913..166068 | TCONS_00057740-exon-scaffold_298-1491911889:165913..166068 | Clytia hemisphaerica | exon |
| TCONS_00057740-exon-scaffold_298-1510915933:165913..166068 | TCONS_00057740-exon-scaffold_298-1510915933:165913..166068 | Clytia hemisphaerica | exon |
| TCONS_00057740-exon-scaffold_298-1575043694:165913..166068 | TCONS_00057740-exon-scaffold_298-1575043694:165913..166068 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_298 | supercontig | scaffold_298:164728..166068 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0016491 | oxidoreductase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0050660 |
flavin adenine dinucleotide binding |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
| molecular_function |
GO:0016614 |
oxidoreductase activity, acting on CH-OH group of donors |
Blast
BLAST of TCONS_00057740 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2) HSP 1 Score: 172.17 bits (435), Expect = 1.832e-47 Identity = 124/328 (37.80%), Postives = 177/328 (53.96%), Query Frame = 1
Query: 229 DEYDFXXXXXXXXXXXXXNRLSENKSWKILLLEAG-----GGENMLS---EIPATTFLNI-KTSIDWYFLSEPAN--DGKTSTIFKNGQLAMPRGKVLGGTSTINAMAYTRGNKRDYDSWEEQGNPGWGYEDVLPYFKKSEDQTNEKLTKDTKYHSTGGYLTIEDVEKAE-VFVKLMDGFSKI-LPENKDYNGEKQSGTVFYQNTIRNGQRCSTAKAYLKP--KRSNLHVIPFSHVQKILTDPETKTAKGVVYKKNGKSMTVKATKEIILSAGAFGSPQILMLSGVGPKEELEKHGIPLIKELQ-VGYNLQDHVNVGVHMVFNESIEL 1164
DEY +VV+GAGSAG V+A RL+E+ + ++LLLEAG G LS +PA N+ +W + +E DG+ L PRG+V GG+S++NAM Y RG+ DY+ W+ QG GW Y LPYF+K++ ++Y G L + + + ++ + P +D NG +Q G + TI G+R S A AYL P R+NL + V ++L E A GV Y KNG+S A+KE+ILS GA SPQ+LMLSG+G ++L+K GIP++ L VG NLQDH+ + + I L
Sbjct: 39 DEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRV--------LYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHE----LGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLF--EGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITL 352
The following BLAST results are available for this feature:
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