TCONS_00005719 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005719
Unique NameTCONS_00005719
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1044

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005719 ID=TCONS_00005719|Name=TCONS_00005719|organism=Clytia hemisphaerica|type=transcript|length=1044bp
AGCTCGAGTCAGCCCAGTCCCAAAAATTGACCATCCAACGAAATTAAAAG
ACTACAGACCAATATCAATCCTACCGGTTTTATCGAAAGTCTACGAACGT
GTTATTTTAACACAATTATGCGATTTCATTGAAAGGAATTCACTTTACCG
TCCAAATCAATCTGGATTTCGGAAAGGGCACACCACAACAACGCTACTCT
TAAAACTACGTGGTGATATAATCAAAGctatgaataaaaatgaaattaca
cTATCAATTCTTATCGACTACTCCAAGGCATTCGATACGATCGACCATTT
TACCCTCATTgataaacttaaaaagttaaactTTAGTTCCATGCCATTGC
AAATCATTATAAGCTATCTTACAAACCGTCAGCAGTTTGTGCAAGTGAAC
GATAAAAGATCACCCGTTCAACCCATTCACTTTGGTGTCCCTCAAGGTAG
TATTTTGGGTCCAGTTTTATTTAACCTATGTTACTGAATTATCTGACCAA
ATCTCCTCTCTCAGTATCCAATATGCTGATGACACAACACTTTATCGTCA
CTCAAAAATTCGTGATATACTCCAATGCATCCGGGAAATCGAGACTGATA
TCGAATCACTTTCCACCTGGTCAGCTGATCATAATCTCTTGTTCAATGCT
GATAAACTGCAATACATCATCTTTTCAACCAAACGTCATATCACAAATTA
TGTAGTGACTACTCGTATCTTATTTCttgttcaaaaaaatcaattgaaCA
AAAAGATGTCGTCAAGCTTATTGGtcttcattttgataaaaatctatCCT
GGTCCGGCCATATCAACCAAATTATAAAATCCAGTCATGGTACCATTCGA
GCTCTTCGTAATTTCAAATGTTTCACACCATTTAAAGTTCGGAAATCACT
CGCTGAAGCTATAGTGCTATgtcagtgttttttacacttttggcaaaaac
gtgaaaatttgggCACTTTTTTGAAACCAAATTTTAGAGAGCaagttttt
gttcattttcaaatttagtgGTTCTATTGGAGAGAGAAAAGATT
Run BLAST on NCBI

protein sequence of TCONS_00005719-protein

>TCONS_00005719-protein ID=TCONS_00005719-protein|Name=TCONS_00005719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
ARVSPVPKIDHPTKLKDYRPISILPVLSKVYERVILTQLCDFIERNSLYR
PNQSGFRKGHTTTTLLLKLRGDIIKAMNKNEITLSILIDYSKAFDTIDHF
TLIDKLKKLNFSSMPLQIIISYLTNRQQFVQVNDKRSPVQPIHFGVPQGS
ILGPVLFNLCY
Run BLAST on NCBI

transcript from alignment at sc0000054:817414..818457

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005719 ID=TCONS_00005719|Name=TCONS_00005719|organism=Clytia hemisphaerica|type=transcript|length=1044bp|location=Sequence derived from alignment at sc0000054:817414..818457 (Clytia hemisphaerica)
AATCTTTTCTCTCTCCAATAGAACcactaaatttgaaaatgaacaaaaac
ttGCTCTCTAAAATTTGGTTTCAAAAAAGTGcccaaattttcacgttttt
gccaaaagtgtaaaaaacactgacATAGCACTATAGCTTCAGCGAGTGAT
TTCCGAACTTTAAATGGTGTGAAACATTTGAAATTACGAAGAGCTCGAAT
GGTACCATGACTGGATTTTATAATTTGGTTGATATGGCCGGACCAGGata
gatttttatcaaaatgaagaCCAATAAGCTTGACGACATCTTTTTGttca
attgatttttttgaacaaGAAATAAGATACGAGTAGTCACTACATAATTT
GTGATATGACGTTTGGTTGAAAAGATGATGTATTGCAGTTTATCAGCATT
GAACAAGAGATTATGATCAGCTGACCAGGTGGAAAGTGATTCGATATCAG
TCTCGATTTCCCGGATGCATTGGAGTATATCACGAATTTTTGAGTGACGA
TAAAGTGTTGTGTCATCAGCATATTGGATACTGAGAGAGGAGATTTGGTC
AGATAATTCAGTAACATAGGTTAAATAAAACTGGACCCAAAATACTACCT
TGAGGGACACCAAAGTGAATGGGTTGAACGGGTGATCTTTTATCGTTCAC
TTGCACAAACTGCTGACGGTTTGTAAGATAGCTTATAATGATTTGCAATG
GCATGGAACTAAagtttaactttttaagtttatcAATGAGGGTAAAATGG
TCGATCGTATCGAATGCCTTGGAGTAGTCGATAAGAATTGATAgtgtaat
ttcatttttattcatagCTTTGATTATATCACCACGTAGTTTTAAGAGTA
GCGTTGTTGTGGTGTGCCCTTTCCGAAATCCAGATTGATTTGGACGGTAA
AGTGAATTCCTTTCAATGAAATCGCATAATTGTGTTAAAATAACACGTTC
GTAGACTTTCGATAAAACCGGTAGGATTGATATTGGTCTGTAGTCTTTTA
ATTTCGTTGGATGGTCAATTTTTGGGACTGGGCTGACTCGAGCT

Coding sequence (CDS) from alignment at sc0000054:817414..818457

>TCONS_00005719 ID=TCONS_00005719|Name=TCONS_00005719|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0000054:817414..818457 (Clytia hemisphaerica)
TCAGTAACATAGGTTAAATAAAACTGGACCCAAAATACTACCTTGAGGGA
CACCAAAGTGAATGGGTTGAACGGGTGATCTTTTATCGTTCACTTGCACA
AACTGCTGACGGTTTGTAAGATAGCTTATAATGATTTGCAATGGCATGGA
ACTAAagtttaactttttaagtttatcAATGAGGGTAAAATGGTCGATCG
TATCGAATGCCTTGGAGTAGTCGATAAGAATTGATAgtgtaatttcattt
ttattcatagCTTTGATTATATCACCACGTAGTTTTAAGAGTAGCGTTGT
TGTGGTGTGCCCTTTCCGAAATCCAGATTGATTTGGACGGTAAAGTGAAT
TCCTTTCAATGAAATCGCATAATTGTGTTAAAATAACACGTTCGTAGACT
TTCGATAAAACCGGTAGGATTGATATTGGTCTGTAGTCTTTTAATTTCGT
TGGATGGTCAATTTTTGGGACTGGGCTGACTCGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003244XLOC_003244Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005719-proteinTCONS_00005719-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005719-exon-sc0000054-1491911889:817414..818457TCONS_00005719-exon-sc0000054-1491911889:817414..818457Clytia hemisphaericaexon
TCONS_00005719-exon-sc0000054-1510915933:817414..818457TCONS_00005719-exon-sc0000054-1510915933:817414..818457Clytia hemisphaericaexon
TCONS_00005719-exon-sc0000054-1575043694:817414..818457TCONS_00005719-exon-sc0000054-1575043694:817414..818457Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:817414..818457 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.697643	1.06874	1.05118	0.761605	1.23417	0.876434	1.96649	1.65532	1.08034	0.962189	0.628205	0.939756	1.80276	1.29714	0.589506	0.431238	0.394789	0.941121	0.253584	0.931697	1.99452	2.46006	1.06393	1.46142	1.20543	2.84173	1.08863	1.25054	1.34597	1.7267
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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