TCONS_00057826 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057826
Unique NameTCONS_00057826
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057826 ID=TCONS_00057826|Name=TCONS_00057826|organism=Clytia hemisphaerica|type=transcript|length=437bp
CAAGGGTATATTTTTTGCTGTCCATGGGTTAAATTAGACTAATTTGTCCT
AGGGTGGTGGGTGATATGTGATATGTCCATGGGGAGAACATGAGGACATG
GTTGTCCATGGGGAGACCTGGAGACCTTAGACCCGAGGACATGTTGCAGA
GGACATGTTGTTTTCCTGTTTTCCATCCCCTGCTGTTTTCCATGGGAAGA
ACCGTGAGGACATGTTGTCCATGGGGGAGAGAACATATGTGTGTCCATGG
GTCGGTCGTGTCATTTGTCCAGGGGTTGGAGAAGGGTCCTTGTTTGTCCA
TGGGGGAGAAATTAGGATGTTTTGTCCATGGGTATTGATAATATTGATaa
cgtattattattattattattaccttATTACCttaatgtcagaaatttta
GCGACCAGAAAAGTTCGCAAGTTAGACCATTCACAAA
Run BLAST on NCBI

transcript from alignment at scaffold_299:55701..56220+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057826 ID=TCONS_00057826|Name=TCONS_00057826|organism=Clytia hemisphaerica|type=transcript|length=520bp|location=Sequence derived from alignment at scaffold_299:55701..56220+ (Clytia hemisphaerica)
CAAGGGTATATTTTTTGCTGTCCATGGGTTAAATTAGACTAATTTGTCCT
AGGGTGGTGGGTGATATGTGATATGTCCATGGGGAGAACATGAGGACATG
GTTGTCCATGGGGAGACCTGGAGACCTTAGACCCGAGGACATGTTGCAGA
GGACATGNCATGGGGAGAACATGAGGACATGGTTGTCCATGGGGAGACCT
GGAGACCTTAGACCCGAGGACATGTTGCAGAGGGGACATGTTGTTTTCCT
GTTTTCCATCCCCTGCTGTTTTCCATGGGAAGAACCGTGAGGACATGTTG
TCCATGGGGGAGAGAACATATGTGTGTCCATGGGTCGGTCGTGTCATTTG
TCCAGGGGTTGGAGAAGGGTCCTTGTTTGTCCATGGGGGAGAAATTAGGA
TGTTTTGTCCATGGGTATTGATAATATTGATaacgtattattattattat
tattaccttATTACCttaatgtcagaaattttaGCGACCAGAAAAGTTCG
CAAGTTAGACCATTCACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036453XLOC_036453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057826-exon-scaffold_299-1491911889:55701..55854TCONS_00057826-exon-scaffold_299-1491911889:55701..55854Clytia hemisphaericaexon
TCONS_00057826-exon-scaffold_299-1510915933:55701..55854TCONS_00057826-exon-scaffold_299-1510915933:55701..55854Clytia hemisphaericaexon
TCONS_00057826-exon-scaffold_299-1575043694:55701..55854TCONS_00057826-exon-scaffold_299-1575043694:55701..55854Clytia hemisphaericaexon
TCONS_00057826-exon-scaffold_299-1491911889:55938..56220TCONS_00057826-exon-scaffold_299-1491911889:55938..56220Clytia hemisphaericaexon
TCONS_00057826-exon-scaffold_299-1510915933:55938..56220TCONS_00057826-exon-scaffold_299-1510915933:55938..56220Clytia hemisphaericaexon
TCONS_00057826-exon-scaffold_299-1575043694:55938..56220TCONS_00057826-exon-scaffold_299-1575043694:55938..56220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_299supercontigscaffold_299:55701..56220 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25192	0.581575	0.987402	0.922188	1.0492	1.16073	1.13723	0.561863	0.524498	0.808532	1.12692	0.518757	0.455023	0.29066	0.306195	0.474104	1.36887	0.359184	0.496232	0.17309	0.902681	0.660445	0.356825	0.162203	0.652355	1.54572	0.426728	0	0.345417	0.351925
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057826 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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