TCONS_00057826 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057826
Unique NameTCONS_00057826
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057826 ID=TCONS_00057826|Name=TCONS_00057826|organism=Clytia hemisphaerica|type=transcript|length=437bp
CAAGGGTATATTTTTTGCTGTCCATGGGTTAAATTAGACTAATTTGTCCT
AGGGTGGTGGGTGATATGTGATATGTCCATGGGGAGAACATGAGGACATG
GTTGTCCATGGGGAGACCTGGAGACCTTAGACCCGAGGACATGTTGCAGA
GGACATGTTGTTTTCCTGTTTTCCATCCCCTGCTGTTTTCCATGGGAAGA
ACCGTGAGGACATGTTGTCCATGGGGGAGAGAACATATGTGTGTCCATGG
GTCGGTCGTGTCATTTGTCCAGGGGTTGGAGAAGGGTCCTTGTTTGTCCA
TGGGGGAGAAATTAGGATGTTTTGTCCATGGGTATTGATAATATTGATaa
cgtattattattattattattaccttATTACCttaatgtcagaaatttta
GCGACCAGAAAAGTTCGCAAGTTAGACCATTCACAAA
Run BLAST on NCBI

transcript from alignment at scaffold_299:55701..56220+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057826 ID=TCONS_00057826|Name=TCONS_00057826|organism=Clytia hemisphaerica|type=transcript|length=520bp|location=Sequence derived from alignment at scaffold_299:55701..56220+ (Clytia hemisphaerica)
CAAGGGTATATTTTTTGCTGTCCATGGGTTAAATTAGACTAATTTGTCCT AGGGTGGTGGGTGATATGTGATATGTCCATGGGGAGAACATGAGGACATG GTTGTCCATGGGGAGACCTGGAGACCTTAGACCCGAGGACATGTTGCAGA GGACATGNCATGGGGAGAACATGAGGACATGGTTGTCCATGGGGAGACCT GGAGACCTTAGACCCGAGGACATGTTGCAGAGGGGACATGTTGTTTTCCT GTTTTCCATCCCCTGCTGTTTTCCATGGGAAGAACCGTGAGGACATGTTG TCCATGGGGGAGAGAACATATGTGTGTCCATGGGTCGGTCGTGTCATTTG TCCAGGGGTTGGAGAAGGGTCCTTGTTTGTCCATGGGGGAGAAATTAGGA TGTTTTGTCCATGGGTATTGATAATATTGATaacgtattattattattat tattaccttATTACCttaatgtcagaaattttaGCGACCAGAAAAGTTCG CAAGTTAGACCATTCACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036453XLOC_036453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057826-exon-scaffold_299-1491911889:55701..55854TCONS_00057826-exon-scaffold_299-1491911889:55701..55854Clytia hemisphaericaexon
TCONS_00057826-exon-scaffold_299-1510915933:55701..55854TCONS_00057826-exon-scaffold_299-1510915933:55701..55854Clytia hemisphaericaexon
TCONS_00057826-exon-scaffold_299-1575043694:55701..55854TCONS_00057826-exon-scaffold_299-1575043694:55701..55854Clytia hemisphaericaexon
TCONS_00057826-exon-scaffold_299-1491911889:55938..56220TCONS_00057826-exon-scaffold_299-1491911889:55938..56220Clytia hemisphaericaexon
TCONS_00057826-exon-scaffold_299-1510915933:55938..56220TCONS_00057826-exon-scaffold_299-1510915933:55938..56220Clytia hemisphaericaexon
TCONS_00057826-exon-scaffold_299-1575043694:55938..56220TCONS_00057826-exon-scaffold_299-1575043694:55938..56220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_299supercontigscaffold_299:55701..56220 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (1.54572 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25192 0.581575 0.987402 0.922188 1.0492 1.16073 1.13723 0.561863 0.524498 0.808532 1.12692 0.518757 0.455023 0.29066 0.306195 0.474104 1.36887 0.359184 0.496232 0.17309 0.902681 0.660445 0.356825 0.162203 0.652355 1.54572 0.426728 0 0.345417 0.351925
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057826 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400Sequence
Match NameE-valueIdentityDescription
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