TCONS_00057896 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057896
Unique NameTCONS_00057896
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1710

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057896 ID=TCONS_00057896|Name=TCONS_00057896|organism=Clytia hemisphaerica|type=transcript|length=1710bp
GAACCGTATAAAAGCCGGCGttttaaaaccaaaaacaaaattttaaatgt
taCGTTATAAAATTTCTTGGTTGTATCTTTGGACAGTGTAATTGATTTGA
TTGAATTTAATATTTGGTAGAAGAAAAGTTTGCGACCAATGTCGATGGCG
ACCGAatattttcTTCTTCCTCAAGATGAAGTGCAACAACAGTCAAAACT
GGGTGATGACTCCGGCAATGAAGAACCTTCTGGGCATAGAGACATCCATT
TCAATAGTAGTTGCAATACTTAACATTATTGAGATAGTTCTCATCAAGCG
TAAAAAGGAAAAGACAAACTTTGATAGATTGCTTATGAGTTTATCAATGG
CCGACTTATTATATGGAGCTTTGAACGGCCTTTTGAACGCACTCCGCATA
ATACAGTCAAACTCAGACATACTCTTCAATGTACGTCTTTTCTTCATGCT
AGCCTCAACTCTTCATCTTTTGCTCATCGGCACAGATAGATTAGTGGCAG
TCGCTAAACCGTTGAAACATAGAGTCATTGCGACACCAAAGAGAATATAT
TGGTCCATATTCCTTGTCTGGGTGTTATCAATTAGCGGATTggccatttt
tcaatttttttatcaatcaagTCAAAATTCCCCAAAAACAAACTCAACAG
ATCCCTTATTACATCCACAACAAAAACTTGATCATGGAGTTGTGAGATTT
CGCTCATCAAAAGTTGAGAGCCAAATAAAGTCTTCCATTCCATTCAGCAA
CAATACATCGACACTGTCCCGCTTACCAAACAAAACATTACAATCAAATT
CTACCAACCTCCGGCGGTGTAACATCAAATCCATGGCGGCACGGATTCAA
AAAAGAAGCACCCATATgtacaagaaagaaaagattNCACTGTCCCGCTT
ACCAAACAAAACTTTACAATCAAATTCTACCGCCCTCTGGTGTAACAACA
ATTCAATGGCGATGGAGATTCAAATAAGAAGTGTCGATATGTAcaacaaa
gaaaagattttaGCTTATTGTATCATCGGGGCAGCCGTTTCTCTGACAAT
ACTCTATTCCTTGGTCATATACTATGTGCAGCGATCTCAAGTGGTGGAAA
TTCGACGAAAAGTCAGCCTGATAAGTATCCTTGTACCAGCTTGTTTTATA
CTTTTCACCATACCCTACGCACTGTACAGCTTACTAACTCAAGCTAAAGT
GGCTCTTTTGTTGAATGTTGTCATGCTTTTAAACAGTGGTGTCAACTCAG
TTCtctatttcttcaaaaacaagtTTCAAACTTGTACAGGAGTGCGATCT
GTGTCACACGTACACGTAAAACGACGGACCCTATCAAAAACAGCAAGTAG
TAGCCTGACTACAATTACAAAGGAACAATTGCAAGACTCTCGAGTGTAAA
TTGCTTTCATGATCCAAGTTATTTAATCATTGGAATTATAcatagtaaaa
atatttcttaatccTCTATTTGCCCCAAAGGGTTAGAATCgactacaaaa
aaaaaatttaaaaaccgaTTTAAGACctaatttttaaagatttcctttta
aaattaagtcatatcgtttgcttactcatcaattttaatttacaagcttt
ttcgcattggattgacacggatatggagcaatattggtcagaaagaggaa
aagaagaacattttttgcttatatcagcataatataacaataagaagaca
ctgtcccgat
Run BLAST on NCBI

protein sequence of TCONS_00057896-protein

>TCONS_00057896-protein ID=TCONS_00057896-protein|Name=TCONS_00057896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
MKCNNSQNWVMTPAMKNLLGIETSISIVVAILNIIEIVLIKRKKEKTNFD
RLLMSLSMADLLYGALNGLLNALRIIQSNSDILFNVRLFFMLASTLHLLL
IGTDRLVAVAKPLKHRVIATPKRIYWSIFLVWVLSISGLAIFQFFYQSSQ
NSPKTNSTDPLLHPQQKLDHGVVRFRSSKVESQIKSSIPFSNNTSTLSRL
PNKTLQSNSTNLRRCNIKSMAARIQKRSTHMYKKEKIXLSRLPNKTLQSN
STALWCNNNSMAMEIQIRSVDMYNKEKILAYCIIGAAVSLTILYSLVIYY
VQRSQVVEIRRKVSLISILVPACFILFTIPYALYSLLTQAKVALLLNVVM
LLNSGVNSVLYFFKNKFQTCTGVRSVSHVHVKRRTLSKTASSSLTTITKE
QLQDSRV
Run BLAST on NCBI

transcript from alignment at scaffold_301:74685..78680+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057896 ID=TCONS_00057896|Name=TCONS_00057896|organism=Clytia hemisphaerica|type=transcript|length=3996bp|location=Sequence derived from alignment at scaffold_301:74685..78680+ (Clytia hemisphaerica)
GAACCGTATAAAAGCCGGCGttttaaaaccaaaaacaaaattttaaatgt taCGTTATAAAATTTCTTGGTTGTATCTTTGGACAGTGTAATTGATTTGA TTGAATTTAATATTTGGTAGAAGAAAAGTTTGCGACCAATGTCGATGGCG ACCGAatatttgtgagtatttttgtgttgATTCCTAAAGAATCGGGTGAA TTAGTATGGCACGCCGTACCTTGACTTACGCAATAAAATattcgattatg cgataatTTATTCGATAAACTCTTTCGACGAGATAAATTATTCGACAAAA AATTCGATACGATGAATTATTCAATAAACATTTCGATTATGCGATTAAAT ATTCGATAAAAATTCGATGCGGTAAAACATGcaataaaaagtttgattaT GCGATTAAATAttcgataaaaatttaaatgcgACATatcattcgataaaa aattcgatgcaataaattattcgataaaaaaattCGATCCGATAAAATAT TCGTTAAAAAATTCGATACAATAAAACATTCGATGcgatgaaatattttc aataaaaaattcgaTACGATAAACGATGCGATGAATCAttcgataaatta ttcgatgaATCATCCGATCGGCCCTTCGCGATATTTAAacttttggtaga aacggcgctccTAACAGGAGGAAAGGCGGAATCATTTCCGGGCAGGCAGT TTCATTAGGGCAGATCAATGTAAAATTACAGGGTCCGGAAAAAAGTAGAA CATATTTCTTGTATCttactgaaaaagaaattgaccaaaatgCGCCAAAC TCTTTTATGTCTTGGGATTATCATAGAAGACCAAAACGATAACTGATATT CACTCTCTAGCCACGTGCTTTAATAAGATTAACCTCCACGagattaaaac tcaaaattctcCTTATGTGGCATAAAATGGCCATTTTTAGCTGCTCTCTG GCTCATTCGCGAATTTAAATCCAAGCgaaatctttcaaaactttgactta aatctagaaaatttcacgattttttaggtttgcgaaatttaatctcgcag aatcaaatcaaatgaaaaccTTTTTAAGCGAAGAGAAAGCGCACTGAATT TCTGCCAAAAACGTCAACCTCTCACATTTCCCGCACACGTAGGGTTGCTT GTTTCACTTGTGCACCGTTTCCACCGAAAGTATAAATACAGGTAGGGCGG ATCTGATGATTCATCGAATCATTTATCGAATCATTTATCGCAGCGAACGA TTTATCTCATTGAACGATTTATCGCATCAAACAActtatcgaatgattta tcgcatcgaattttttatcgcataatttatcgcatcgaaagAATTTATCG AATAAATTATCTCATAATCGAATATTTAATTGTataatttatcgcatcga aaAAGATTATCGAATAAATCATCGCAAAATCGAATACTTTATCGCATAAG ACAGCTACAACGTGTCATAATTAAGAGTCTGCAAAGACTTAAATGTTCTT CACTTGTTCTTAATACTTTGGTCATTGAAGCaatatgttcttacatagtt tgttcttataaaaaattgtaaacTCGAAGAAAGGGAAGGTCGCCACTAAT CACTTATCCTCAGTCGCCCTATTTGTCAGATGTCAACAAAAATTTGTAGA GGATAGCAAATCTTTATGACACTGTATTTAATTATCTTTCAGTATTATGA ATAGATAGTCAGAGTCATTAAAACCAGACGTCTCCTCCACAAATTTGgcg cccctcttgtctacgctactgataTGCTGACATGTTTTCTGAGAATTATC AAACTAAGTGTTTACTTTGGgttgaaaaatgtataattaCGAAACACATC AACAAATCAAATCTATCTAAatccttcattttttttcaatttgaaaaaag ttctaaTTTTTAATAGCGTTTTTCGGAAAATAGAGTGAAATATCTCAGTT TGAAATTTGTTGACCGACAACGGTAAATAAAGGAGCTCCCTTATTGGGCT GTTCCAAAagatttccatacagggggtggacaaaccttttcaggtcaaaa caaatttcttggaaatgtgtggatactcccaggaaatttgtaaaaaatga ccTCCTGGAACTTCTcgaattaccccctggaaaagttcgtccaTTTTGCA GCATTTCGCAAACGAATGCTTCACCTTACGGTCGATCtattcaatagacc ttatcggagtttttgatttttctaaaaaagcgatgcattgtgggattgtt tcgagcttatgacaatagaattccctcgaagaattcctaagagatttcta ttgtaatacactcgaaacaatcccacaatgcatcgcttttttagaaaaat caaatacTCCGAAGAGTTCTATAGTTACTTTCTCCCGTAACCCCTCAGAG ACAACTCTCaggacaatttaaaaatatttccctaaaattattttcagtcT TCTTCCTCAAGATGAAGTGCAACAACAGTCAAAACTGGGTGATGACTCCG GCAATGAAGAACCTTCTGGGCATAGAGACATCCATTTCAATAGTAGTTGC AATACTTAACATTATTGAGATAGTTCTCATCAAGCGTAAAAAGGAAAAGA CAAACTTTGATAGATTGCTTATGAGTTTATCAATGGCCGACTTATTATAT GGAGCTTTGAACGGCCTTTTGAACGCACTCCGCATAATACAGTCAAACTC AGACATACTCTTCAATGTACGTCTTTTCTTCATGCTAGCCTCAACTCTTC ATCTTTTGCTCATCGGCACAGATAGATTAGTGGCAGTCGCTAAACCGTTG AAACATAGAGTCATTGCGACACCAAAGAGAATATATTGGTCCATATTCCT TGTCTGGGTGTTATCAATTAGCGGATTggccatttttcaatttttttatc aatcaagTCAAAATTCCCCAAAAACAAACTCAACAGATCCCTTATTACAT CCACAACAAAAACTTGATCATGGAGTTGTGAGATTTCGCTCATCAAAAGT TGAGAGCCAAATAAAGTCTTCCATTCCATTCAGCAACAATACATCGACAC TGTCCCGCTTACCAAACAAAACATTACAATCAAATTCTACCAACCTCCGG CGGTGTAACATCAAATCCATGGCGGCACGGATTCAAAAAAGAAGCACCCA TATgtacaagaaagaaaagattNCACTGTCCCGCTTACCAAACAAAACTT TACAATCAAATTCTACCGCCCTCTGGTGTAACAACAATTCAATGGCGATG GAGATTCAAATAAGAAGTGTCGATATGTAcaacaaagaaaagattttaGC TTATTGTATCATCGGGGCAGCCGTTTCTCTGACAATACTCTATTCCTTGG TCATATACTATGTGCAGCGATCTCAAGTGGTGGAAATTCGACGAAAAGTC AGCCTGATAAGTATCCTTGTACCAGCTTGTTTTATACTTTTCACCATACC CTACGCACTGTACAGCTTACTAACTCAAGCTAAAGTGGCTCTTTTGTTGA ATGTTGTCATGCTTTTAAACAGTGGTGTCAACTCAGTTCtctatttcttc aaaaacaagtTTCAAACTTGTACAGGAGTGCGATCTGTGTCACACGTACA CGTAAAACGACGGACCCTATCAAAAACAGCAAGTAGTAGCCTGACTACAA TTACAAAGGAACAATTGCAAGACTCTCGAGTGTAAATTGCTTTCATGATC CAAGTTATTTAATCATTGGAATTATAcatagtaaaaatatttcttaatcc TCTATTTGCCCCAAAGGGTTAGAATCgactacaaaaaaaaaatttaaaaa ccgaTTTAAGACctaatttttaaagatttccttttaaaattaagtcatat cgtttgcttactcatcaattttaatttacaagctttttcgcattggattg acacggatatggagcaatattggtcagaaagaggaaaagaagaacatttt ttgcttatatcagcataatataacaataagaagacactgtcccgat

Coding sequence (CDS) from alignment at scaffold_301:74685..78680+

>TCONS_00057896 ID=TCONS_00057896|Name=TCONS_00057896|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_301:74685..78680+ (Clytia hemisphaerica)
ATGAAGTGCAACAACAGTCAAAACTGGGTGATGACTCCGGCAATGAAGAA
CCTTCTGGGCATAGAGACATCCATTTCAATAGTAGTTGCAATACTTAACA
TTATTGAGATAGTTCTCATCAAGCGTAAAAAGGAAAAGACAAACTTTGAT
AGATTGCTTATGAGTTTATCAATGGCCGACTTATTATATGGAGCTTTGAA
CGGCCTTTTGAACGCACTCCGCATAATACAGTCAAACTCAGACATACTCT
TCAATGTACGTCTTTTCTTCATGCTAGCCTCAACTCTTCATCTTTTGCTC
ATCGGCACAGATAGATTAGTGGCAGTCGCTAAACCGTTGAAACATAGAGT
CATTGCGACACCAAAGAGAATATATTGGTCCATATTCCTTGTCTGGGTGT
TATCAATTAGCGGATTggccatttttcaatttttttatcaatcaagTCAA
AATTCCCCAAAAACAAACTCAACAGATCCCTTATTACATCCACAACAAAA
ACTTGATCATGGAGTTGTGAGATTTCGCTCATCAAAAGTTGAGAGCCAAA
TAAAGTCTTCCATTCCATTCAGCAACAATACATCGACACTGTCCCGCTTA
CCAAACAAAACATTACAATCAAATTCTACCAACCTCCGGCGGTGTAACAT
CAAATCCATGGCGGCACGGATTCAAAAAAGAAGCACCCATATgtacaaga
aagaaaagattNCACTGTCCCGCTTACCAAACAAAACTTTACAATCAAAT
TCTACCGCCCTCTGGTGTAACAACAATTCAATGGCGATGGAGATTCAAAT
AAGAAGTGTCGATATGTAcaacaaagaaaagattttaGCTTATTGTATCA
TCGGGGCAGCCGTTTCTCTGACAATACTCTATTCCTTGGTCATATACTAT
GTGCAGCGATCTCAAGTGGTGGAAATTCGACGAAAAGTCAGCCTGATAAG
TATCCTTGTACCAGCTTGTTTTATACTTTTCACCATACCCTACGCACTGT
ACAGCTTACTAACTCAAGCTAAAGTGGCTCTTTTGTTGAATGTTGTCATG
CTTTTAAACAGTGGTGTCAACTCAGTTCtctatttcttcaaaaacaagtT
TCAAACTTGTACAGGAGTGCGATCTGTGTCACACGTACACGTAAAACGAC
GGACCCTATCAAAAACAGCAAGTAGTAGCCTGACTACAATTACAAAGGAA
CAATTGCAAGACTCTCGAGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036505XLOC_036505Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057896-proteinTCONS_00057896-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057896-exon-scaffold_301-1491911889:74685..74845TCONS_00057896-exon-scaffold_301-1491911889:74685..74845Clytia hemisphaericaexon
TCONS_00057896-exon-scaffold_301-1510915933:74685..74845TCONS_00057896-exon-scaffold_301-1510915933:74685..74845Clytia hemisphaericaexon
TCONS_00057896-exon-scaffold_301-1575043694:74685..74845TCONS_00057896-exon-scaffold_301-1575043694:74685..74845Clytia hemisphaericaexon
TCONS_00057896-exon-scaffold_301-1491911889:77132..78680TCONS_00057896-exon-scaffold_301-1491911889:77132..78680Clytia hemisphaericaexon
TCONS_00057896-exon-scaffold_301-1510915933:77132..78680TCONS_00057896-exon-scaffold_301-1510915933:77132..78680Clytia hemisphaericaexon
TCONS_00057896-exon-scaffold_301-1575043694:77132..78680TCONS_00057896-exon-scaffold_301-1575043694:77132..78680Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_301supercontigscaffold_301:74685..78680 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.0163268 tpm) - - (9.5017 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.118649 0.161607 0.161354 0.0524903 0.350786 0.302252 4.25431 5.7189 9.5017 7.62426 1.74963 9.46391 0.0628915 0.0163268 0.120792 0.0576291 0.124205 0.218238 0.0502513 0.15786 0.0457111 0.234157 0.108461 0.0739153 0.380777 0.158576 0.129741 0.10417 0.105014 0.187358
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600Sequence
Match NameE-valueIdentityDescription
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