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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057916 ID=TCONS_00057916|Name=TCONS_00057916|organism=Clytia hemisphaerica|type=transcript|length=1992bpRun BLAST on NCBI protein sequence of TCONS_00057916-protein >TCONS_00057916-protein ID=TCONS_00057916-protein|Name=TCONS_00057916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=664bp PRARGQAKSEMDASVVTPMITETSTNDEVYNFIQLQHTSNEASQPSEMESRun BLAST on NCBI transcript from alignment at scaffold_302:71169..76256+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057916 ID=TCONS_00057916|Name=TCONS_00057916|organism=Clytia hemisphaerica|type=transcript|length=5088bp|location=Sequence derived from alignment at scaffold_302:71169..76256+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_302:71169..76256+ >TCONS_00057916 ID=TCONS_00057916|Name=TCONS_00057916|organism=Clytia hemisphaerica|type=CDS|length=7968bp|location=Sequence derived from alignment at scaffold_302:71169..76256+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057916 vs. Swiss-Prot (Human)
Match: ZN184 (Zinc finger protein 184 OS=Homo sapiens GN=ZNF184 PE=1 SV=4) HSP 1 Score: 175.252 bits (443), Expect = 2.634e-46 Identity = 97/288 (33.68%), Postives = 145/288 (50.35%), Query Frame = 1
Query: 292 YVCDKCNRTFKQKSRYERHIQNHPSEKHYLCETCHKTFTRVSHLEKHIKTHTEERSHLCEVCGAAFILPHHLVRHMLVHSGERPYQCEVCNKTFTRKAGLTQHQHVHTGLRPYGCEHENCGRYFTDKTTLRRHMMTHSSEKPFVCKECDKTFRTKSACRKHYLRHFKDGASYKCGVCEEMFKDEREYKMHLETHDEKQRTGAHRCGFCLRVFKSQEDLNAHVPLHESGLQYTCERCSARFFTQVDFLKHTAKH-------FEESTLAVEQNIQEQHHVSTATNAQPKE 1134
Y C++C + F Q+ + H + H EK + C+ C KTFTR +HL +H K HT E+++ C CG AF P +RH ++H+GE+PY+C C K F++ + LTQHQ HTG +PY C CG+ F+ ++L +H+ H+ EKP+ C EC K F S+ +H H ++ ++C C + F H +TH +++ A+ C C + F L H +H Y C C F ++H H E A QNI H T A+P E
Sbjct: 334 YTCNECGKAFSQRGHFMEHQKIHTGEKPFKCDECDKTFTRSTHLTQHQKIHTGEKTYKCNECGKAFNGPSTFIRHHMIHTGEKPYECNECGKAFSQHSNLTQHQKTHTGEKPYDC--AECGKSFSYWSSLAQHLKIHTGEKPYKCNECGKAFSYCSSLTQHRRIHTRE-KPFECSECGKAFSYLSNLNQHQKTHTQEK---AYECKECGKAFIRSSSLAKHERIHTGEKPYQCHECGKTFSYGSSLIQHRKIHTGERPYKCNECGRAFNQNIHLTQHKRIHTGAKPYE 615 HSP 2 Score: 157.918 bits (398), Expect = 2.283e-40 Identity = 88/261 (33.72%), Postives = 127/261 (48.66%), Query Frame = 1
Query: 292 YVCDKCNRTFKQKSRYERHIQNHPSEKHYLCETCHKTFTRVSHLEKHIKTHTEERSHLCEVCGAAFILPHHLVRHMLVHSGERPYQCEVCNKTFTRKAGLTQHQHVHTGLRPYGCEHENCGRYFTDKTTLRRHMMTHSSEKPFVCKECDKTFRTKSACRKHYLRHFKDGASYKCGVCEEMFKDEREYKMHLETHDEKQRTGAHRCGFCLRVFKSQEDLNAHVPLHESGLQYTCERCSARFFTQVDFLKHTAKHFEESTLAV 1074
Y C++C + F S +H + H EK + C C K F+ +S+L +H KTHT+E+++ C+ CG AFI L +H +H+GE+PYQC C KTF+ + L QH+ +HTG RPY C CGR F L +H H+ KP+ C EC K FR S+ +H H ++ Y+C CE+ F H H ++ ++C C + F L H H Y C C F ++H H E
Sbjct: 474 YKCNECGKAFSYCSSLTQHRRIHTREKPFECSECGKAFSYLSNLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTGEKPYQCHECGKTFSYGSSLIQHRKIHTGERPYKCN--ECGRAFNQNIHLTQHKRIHTGAKPYECAECGKAFRHCSSLAQHQKTHTEE-KPYQCNKCEKTFSQSSHLTQHQRIHTGEK---PYKCNECDKAFSRSTHLTEHQNTHTGEKPYNCNECRKTFSQSTYLIQHQRIHSGEKPFGC 728 HSP 3 Score: 156.762 bits (395), Expect = 4.884e-40 Identity = 86/263 (32.70%), Postives = 129/263 (49.05%), Query Frame = 1
Query: 292 YVCDKCNRTFKQKSRYERHIQNHPSEKHYLCETCHKTFTRVSHLEKHIKTHTEERSHLCEVCGAAFILPHHLVRHMLVHSGERPYQCEVCNKTFTRKAGLTQHQHVHTGLRPYGCEHENCGRYFTDKTTLRRHMMTHSSEKPFVCKECDKTFRTKSACRKHYLRHFKDGASYKCGVCEEMFKDEREYKMHLETHDEKQRTGAHRCGFCLRVFKSQEDLNAHVPLHESGLQYTCERCSARFFTQVDFLKHTAKHFEESTLAVEQ 1080
Y CD+C + F + +H + H EK Y C+ C K F++ +HL +H + HT E+ + C CG AF H + H +H+GE+P++C+ C+KTFTR LTQHQ +HTG + Y C CG+ F +T RH M H+ EKP+ C EC K F S +H H + Y C C + F HL+ H ++ ++C C + F L H +H + C C F + +H H +E ++
Sbjct: 278 YKCDQCGKGFIEGPSLTQHQRIHTGEKPYKCDECGKAFSQRTHLVQHQRIHTGEKPYTCNECGKAFSQRGHFMEHQKIHTGEKPFKCDECDKTFTRSTHLTQHQKIHTGEKTYKC--NECGKAFNGPSTFIRHHMIHTGEKPYECNECGKAFSQHSNLTQHQKTHTGE-KPYDCAECGKSFSYWSSLAQHLKIHTGEK---PYKCNECGKAFSYCSSLTQHRRIHTREKPFECSECGKAFSYLSNLNQHQKTHTQEKAYECKE 534 HSP 4 Score: 150.984 bits (380), Expect = 4.831e-38 Identity = 83/254 (32.68%), Postives = 121/254 (47.64%), Query Frame = 1
Query: 298 CDKCNRTFKQKSRYERHIQNHPSEKHYLCETCHKTFTRVSHLEKHIKTHTEERSHLCEVCGAAFILPHHLVRHMLVHSGERPYQCEVCNKTFTRKAGLTQHQHVHTGLRPYGCEHENCGRYFTDKTTLRRHMMTHSSEKPFVCKECDKTFRTKSACRKHYLRHFKDGASYKCGVCEEMFKDEREYKMHLETHDEKQRTGAHRCGFCLRVFKSQEDLNAHVPLHESGLQYTCERCSARFFTQVDFLKHTAKHFEE 1059
C++C + F S RH + H EK Y C C K F+R +L H + HT ++ + C+ CG FI L +H +H+GE+PY+C+ C K F+++ L QHQ +HTG +PY C CG+ F+ + H H+ EKPF C ECDKTF + +H H + +YKC C + F + H H ++ + C C + F +L H H Y C C F +H H E
Sbjct: 224 CNECGKAFSYCSALIRHQRTHTGEKPYKCNECEKAFSRSENLINHQRIHTGDKPYKCDQCGKGFIEGPSLTQHQRIHTGEKPYKCDECGKAFSQRTHLVQHQRIHTGEKPYTC--NECGKAFSQRGHFMEHQKIHTGEKPFKCDECDKTFTRSTHLTQHQKIHTGE-KTYKCNECGKAFNGPSTFIRHHMIHTGEK---PYECNECGKAFSQHSNLTQHQKTHTGEKPYDCAECGKSFSYWSSLAQHLKIHTGE 471 HSP 5 Score: 148.288 bits (373), Expect = 3.027e-37 Identity = 84/253 (33.20%), Postives = 122/253 (48.22%), Query Frame = 1
Query: 292 YVCDKCNRTFKQKSRYERHIQNHPSEKHYLCETCHKTFTRVSHLEKHIKTHTEERSHLCEVCGAAFILPHHLVRHMLVHSGERPYQCEVCNKTFTRKAGLTQHQHVHTGLRPYGCEHENCGRYFTDKTTLRRHMMTHSSEKPFVCKECDKTFRTKSACRKHYLRHFKDGASYKCGVCEEMFKDEREYKMHLETHDEKQRTGAHRCGFCLRVFKSQEDLNAHVPLHESGLQYTCERCSARFFTQVDFLKHTAKH 1050
+ C +C + F S +H + H EK Y C+ C K F R S L KH + HT E+ + C CG F L++H +H+GERPY+C C + F + LTQH+ +HTG +PY C CG+ F ++L +H TH+ EKP+ C +C+KTF S +H H + YKC C++ F H TH ++ + C C + F L H +H + C C F + KH H
Sbjct: 502 FECSECGKAFSYLSNLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTGEKPYQCHECGKTFSYGSSLIQHRKIHTGERPYKCNECGRAFNQNIHLTQHKRIHTGAKPYEC--AECGKAFRHCSSLAQHQKTHTEEKPYQCNKCEKTFSQSSHLTQHQRIHTGE-KPYKCNECDKAFSRSTHLTEHQNTHTGEK---PYNCNECRKTFSQSTYLIQHQRIHSGEKPFGCNDCGKSFRYRSALNKHQRLH 748 HSP 6 Score: 147.517 bits (371), Expect = 6.762e-37 Identity = 86/256 (33.59%), Postives = 126/256 (49.22%), Query Frame = 1
Query: 292 YVCDKCNRTFKQKSRYERHIQNHPSEKHYLCETCHKTFTRVSHLEKHIKTHTEERSHLCEVCGAAFILPHHLVRHMLVHSGERPYQCEVCNKTFTRKAGLTQHQHVHTGLRPYGCEHENCGRYFTDKTTLRRHMMTHSSEKPFVCKECDKTFRTKSACRKHYLRHFKDGASYKCGVCEEMFKDEREYKMHLETHDEKQRTGAHRCGFCLRVFKSQEDLNAHVPLHESGLQYTCERCSARFFTQVDFLKHTAKHFEE 1059
Y C++C + F S + RH H EK Y C C K F++ S+L +H KTHT E+ + C CG +F L +H+ +H+GE+PY+C C K F+ + LTQH+ +HT +P+ C CG+ F+ + L +H TH+ EK + CKEC K F S+ KH H + Y+C C + F H + H ++ ++C C R F L H +H Y C C F +H H EE
Sbjct: 390 YKCNECGKAFNGPSTFIRHHMIHTGEKPYECNECGKAFSQHSNLTQHQKTHTGEKPYDCAECGKSFSYWSSLAQHLKIHTGEKPYKCNECGKAFSYCSSLTQHRRIHTREKPFEC--SECGKAFSYLSNLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTGE-KPYQCHECGKTFSYGSSLIQHRKIHTGER---PYKCNECGRAFNQNIHLTQHKRIHTGAKPYECAECGKAFRHCSSLAQHQKTHTEE 639 HSP 7 Score: 144.436 bits (363), Expect = 7.597e-36 Identity = 90/336 (26.79%), Postives = 148/336 (44.05%), Query Frame = 1
Query: 52 PMITETSTNDEVYNFIQLQHTSNEASQPSEMESTVQTETMEHDSQVIEPRKEIGTTAVDQTNQFDQNITHMTQTFEPVNLYVCDKCNRTFKQKSRYERHIQNHPSEKHYLCETCHKTFTRVSHLEKHIKTHTEERSHLCEVCGAAFILPHHLVRHMLVHSGERPYQCEVCNKTFTRKAGLTQHQHVHTGLRPYGCEHENCGRYFTDKTTLRRHMMTHSSEKPFVCKECDKTFRTKSACRKHYLRHFKDGASYKCGVCEEMFKDEREYKMHLETHDEKQRTGAHRCGFCLRVFKSQEDLNAHVPLHESGLQYTCERCSARFFTQVDFLKHTAKHFEE 1059
P + N+E + + +SN +Q E T +++ +S ++ K + + + +T Y C++C + F + H + H +K Y C+ C K F L +H + HT E+ + C+ CG AF HLV+H +H+GE+PY C C K F+++ +HQ +HTG +P+ C + C + FT T L +H H+ EK + C EC K F S +H++ H + Y+C C + F H +TH ++ + C C + F L H+ +H Y C C F +H H E
Sbjct: 172 PSWEKGPVNNEFGKSVNV--SSNLVTQEPSPEETSTKRSIKQNSNPVKKEKSCKCNECGKAFSYCSALIRHQRTHTGEKPYKCNECEKAFSRSENLINHQRIHTGDKPYKCDQCGKGFIEGPSLTQHQRIHTGEKPYKCDECGKAFSQRTHLVQHQRIHTGEKPYTCNECGKAFSQRGHFMEHQKIHTGEKPFKC--DECDKTFTRSTHLTQHQKIHTGEKTYKCNECGKAFNGPSTFIRHHMIHTGE-KPYECNECGKAFSQHSNLTQHQKTHTGEK---PYDCAECGKSFSYWSSLAQHLKIHTGEKPYKCNECGKAFSYCSSLTQHRRIHTRE 499 HSP 8 Score: 135.191 bits (339), Expect = 6.539e-33 Identity = 81/239 (33.89%), Postives = 114/239 (47.70%), Query Frame = 1
Query: 250 NITHMTQTFEPVNLYVCDKCNRTFKQKSRYERHIQNHPSEKHYLCETCHKTFTRVSHLEKHIKTHTEERSHLCEVCGAAFILPHHLVRHMLVHSGERPYQCEVCNKTFTRKAGLTQHQHVHTGLRPYGCEHENCGRYFTDKTTLRRHMMTHSSEKPFVCKECDKTFRTKSACRKHYLRHFKDGASYKCGVCEEMFKDEREYKMHLETHDEKQRTGAHRCGFCLRVFKSQEDLNAHVPLH 966
N+ +T Y C +C + F + S +H + H EK Y C C KTF+ S L +H K HT ER + C CG AF HL +H +H+G +PY+C C K F + L QHQ HT +PY C C + F+ + L +H H+ EKP+ C ECDK F + +H H + Y C C + F H H ++ G + CG + F+ + LN H LH
Sbjct: 516 NLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTGEKPYQCHECGKTFSYGSSLIQHRKIHTGERPYKCNECGRAFNQNIHLTQHKRIHTGAKPYECAECGKAFRHCSSLAQHQKTHTEEKPYQC--NKCEKTFSQSSHLTQHQRIHTGEKPYKCNECDKAFSRSTHLTEHQNTHTGE-KPYNCNECRKTFSQSTYLIQHQRIHSGEKPFGCNDCG---KSFRYRSALNKHQRLH 748 HSP 9 Score: 95.5153 bits (236), Expect = 2.947e-20 Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 1
Query: 292 YVCDKCNRTFKQKSRYERHIQNHPSEKHYLCETCHKTFTRVSHLEKHIKTHTEERSHLCEVCGAAFILPHHLVRHMLVHSGERPYQCEVCNKTFTRKAGLTQHQHVHTGL 621
Y C+KC +TF Q S +H + H EK Y C C K F+R +HL +H THT E+ + C C F +L++H +HSGE+P+ C C K+F ++ L +HQ +H G+
Sbjct: 642 YQCNKCEKTFSQSSHLTQHQRIHTGEKPYKCNECDKAFSRSTHLTEHQNTHTGEKPYNCNECRKTFSQSTYLIQHQRIHSGEKPFGCNDCGKSFRYRSALNKHQRLHPGI 751 The following BLAST results are available for this feature:
BLAST of TCONS_00057916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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