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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057992 ID=TCONS_00057992|Name=TCONS_00057992|organism=Clytia hemisphaerica|type=transcript|length=1417bp
GCTTGCTATGATTTTCACTGAGAAACAGCTACATAAGGAAATATATCTAA
CTTTGAATCAAAAACAGGATATAGATGAAGAGTATTCAGTGAATCCTATC
aagttttctaactttttttggtcaATCTACCATCATGCCTTCGCTAACTT
ATGACAGACTTCAACAACCTAAACACCAGACTATTTCCAgtgaagaaaga
aaacaaaacaaaaaggagGCCAGAAAACCAAGGAAGCCAACCAGGGGAAA
AGCTCAGAAAATGAGTAGCAATGAAGAGAGTGTTTACAGTCGACTTCACG
TTCCTGTGAAAAGTCAAAAGGAGGAAACAACGGGGAAATTTTCCAAGAGC
AAACCGAGAGAGTCCAACAGTAAAATATTAGCTCTAAAACCAGACGCAGC
AATGCGAAATTTACCAAGTCCTCCAAAGAATGGAATTGAAGGAGAAATAG
AGACTAGTGAACAAGACTTGCGTCAAAGGGAAACGAGCTATGACAAAAAA
GAGTTTACTCAACAAACCAAGAGCAGTGAAAACGGCAACAGGTTACGACA
AATGGCGAAAAAGAGTTTGAAACAGGATCACATTTCTAACAATGTCAGCA
AGTTTTTAGACACCAATAAAGTCGAAACTGTATTACGACAGATGGGTTTG
ACCGATGAAGGACAGCGTTTTCATAATTTAATCAAACATCGTTTTAGACT
TGAAGAGGACTTTATACGAATCAATCAAAATGTTGGCATCCAAACGTTGG
AGGGTGATTTTGATGAGTGCGCTTCCAAAAAACACTCCGCCGTTGGGGGT
TTAAAAGTTCGACATGTGCCAAAAGAATTCATAATGGTAGATGAATATGA
TCCAAAAATTCTGGCGAAAAATTTGAACGTTTTAAAAGATTTGGAGAAAC
GGACCATCGCTATTCACCGAAAGTGTCTTCAAGAACAAATATAAAGTCTG
CAAAATATATACAGTGTTTTGTAAGGTAATATCGGCTTAAAACATTTGAT
GGAAGTAACACTATGGAATTATAAATGTTGGATACAAAATGTACACTTGC
AATGTAGAACAAAAGGAGAAattcttttcatgtttttttgtaaaatacta
ACACAAGAACTTATAaagtaccgggtgacccacgaaaaagttcgaacgtt
tctcggcgtcttgaggccgaacaaatgtcccaaagtgcatggtgttttat
tatttagaaagtagatatcctaacttaaaatccgagccattactttttaa
atttgacgcacaagttccctagttatgagcttttaaactcaaaattcact
tttcggaaagtgtaaaaaacaggtaaaaaagggggatcaaattaggtatt
tttcccgtatttttagacgtttttgatatacagtttttgagaaaattcct
tgaaagtgccaattttg Run BLAST on NCBI protein sequence of TCONS_00057992-protein >TCONS_00057992-protein ID=TCONS_00057992-protein|Name=TCONS_00057992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MPSLTYDRLQQPKHQTISSEERKQNKKEARKPRKPTRGKAQKMSSNEESV
YSRLHVPVKSQKEETTGKFSKSKPRESNSKILALKPDAAMRNLPSPPKNG
IEGEIETSEQDLRQRETSYDKKEFTQQTKSSENGNRLRQMAKKSLKQDHI
SNNVSKFLDTNKVETVLRQMGLTDEGQRFHNLIKHRFRLEEDFIRINQNV
GIQTLEGDFDECASKKHSAVGGLKVRHVPKEFIMVDEYDPKILAKNLNVL
KDLEKRTIAIHRKCLQEQI Run BLAST on NCBI transcript from alignment at scaffold_302:76327..77743 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057992 ID=TCONS_00057992|Name=TCONS_00057992|organism=Clytia hemisphaerica|type=transcript|length=1417bp|location=Sequence derived from alignment at scaffold_302:76327..77743 (Clytia hemisphaerica)
caaaattggcactttcaaggaattttctcaaaaactgtatatcaaaaacg
tctaaaaatacgggaaaaatacctaatttgatcccccttttttacctgtt
ttttacactttccgaaaagtgaattttgagtttaaaagctcataactagg
gaacttgtgcgtcaaatttaaaaagtaatggctcggattttaagttagga
tatctactttctaaataataaaacaccatgcactttgggacatttgttcg
gcctcaagacgccgagaaacgttcgaactttttcgtgggtcacccggtac
ttTATAAGTTCTTGTGTtagtattttacaaaaaaacatgaaaagaatTTC
TCCTTTTGTTCTACATTGCAAGTGTACATTTTGTATCCAACATTTATAAT
TCCATAGTGTTACTTCCATCAAATGTTTTAAGCCGATATTACCTTACAAA
ACACTGTATATATTTTGCAGACTTTATATTTGTTCTTGAAGACACTTTCG
GTGAATAGCGATGGTCCGTTTCTCCAAATCTTTTAAAACGTTCAAATTTT
TCGCCAGAATTTTTGGATCATATTCATCTACCATTATGAATTCTTTTGGC
ACATGTCGAACTTTTAAACCCCCAACGGCGGAGTGTTTTTTGGAAGCGCA
CTCATCAAAATCACCCTCCAACGTTTGGATGCCAACATTTTGATTGATTC
GTATAAAGTCCTCTTCAAGTCTAAAACGATGTTTGATTAAATTATGAAAA
CGCTGTCCTTCATCGGTCAAACCCATCTGTCGTAATACAGTTTCGACTTT
ATTGGTGTCTAAAAACTTGCTGACATTGTTAGAAATGTGATCCTGTTTCA
AACTCTTTTTCGCCATTTGTCGTAACCTGTTGCCGTTTTCACTGCTCTTG
GTTTGTTGAGTAAACTCTTTTTTGTCATAGCTCGTTTCCCTTTGACGCAA
GTCTTGTTCACTAGTCTCTATTTCTCCTTCAATTCCATTCTTTGGAGGAC
TTGGTAAATTTCGCATTGCTGCGTCTGGTTTTAGAGCTAATATTTTACTG
TTGGACTCTCTCGGTTTGCTCTTGGAAAATTTCCCCGTTGTTTCCTCCTT
TTGACTTTTCACAGGAACGTGAAGTCGACTGTAAACACTCTCTTCATTGC
TACTCATTTTCTGAGCTTTTCCCCTGGTTGGCTTCCTTGGTTTTCTGGCc
tcctttttgttttgttttctttcttcacTGGAAATAGTCTGGTGTTTAGG
TTGTTGAAGTCTGTCATAAGTTAGCGAAGGCATGATGGTAGATtgaccaa
aaaaagttagaaaacttGATAGGATTCACTGAATACTCTTCATCTATATC
CTGTTTTTGATTCAAAGTTAGATATATTTCCTTATGTAGCTGTTTCTCAG
TGAAAATCATAGCAAGC Coding sequence (CDS) from alignment at scaffold_302:76327..77743 >TCONS_00057992 ID=TCONS_00057992|Name=TCONS_00057992|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_302:76327..77743 (Clytia hemisphaerica)
TTATATTTGTTCTTGAAGACACTTTCGGTGAATAGCGATGGTCCGTTTCT
CCAAATCTTTTAAAACGTTCAAATTTTTCGCCAGAATTTTTGGATCATAT
TCATCTACCATTATGAATTCTTTTGGCACATGTCGAACTTTTAAACCCCC
AACGGCGGAGTGTTTTTTGGAAGCGCACTCATCAAAATCACCCTCCAACG
TTTGGATGCCAACATTTTGATTGATTCGTATAAAGTCCTCTTCAAGTCTA
AAACGATGTTTGATTAAATTATGAAAACGCTGTCCTTCATCGGTCAAACC
CATCTGTCGTAATACAGTTTCGACTTTATTGGTGTCTAAAAACTTGCTGA
CATTGTTAGAAATGTGATCCTGTTTCAAACTCTTTTTCGCCATTTGTCGT
AACCTGTTGCCGTTTTCACTGCTCTTGGTTTGTTGAGTAAACTCTTTTTT
GTCATAGCTCGTTTCCCTTTGACGCAAGTCTTGTTCACTAGTCTCTATTT
CTCCTTCAATTCCATTCTTTGGAGGACTTGGTAAATTTCGCATTGCTGCG
TCTGGTTTTAGAGCTAATATTTTACTGTTGGACTCTCTCGGTTTGCTCTT
GGAAAATTTCCCCGTTGTTTCCTCCTTTTGACTTTTCACAGGAACGTGAA
GTCGACTGTAAACACTCTCTTCATTGCTACTCATTTTCTGAGCTTTTCCC
CTGGTTGGCTTCCTTGGTTTTCTGGCctcctttttgttttgttttctttc
ttcacTGGAAATAGTCTGGTGTTTAGGTTGTTGAAGTCTGTCATAAGTTA
GCGAAGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057992-exon-scaffold_302-1491911889:76327..77743 | TCONS_00057992-exon-scaffold_302-1491911889:76327..77743 | Clytia hemisphaerica | exon |
| TCONS_00057992-exon-scaffold_302-1510915933:76327..77743 | TCONS_00057992-exon-scaffold_302-1510915933:76327..77743 | Clytia hemisphaerica | exon |
| TCONS_00057992-exon-scaffold_302-1575043694:76327..77743 | TCONS_00057992-exon-scaffold_302-1575043694:76327..77743 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_302 | supercontig | scaffold_302:76327..77743 . |
Blast
The following BLAST results are available for this feature:
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