TCONS_00057965 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057965
Unique NameTCONS_00057965
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length965

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057965 ID=TCONS_00057965|Name=TCONS_00057965|organism=Clytia hemisphaerica|type=transcript|length=965bp
tagaatgttatttttctttatagtGATTACAAATTTATAactattataaa
aaatatattgaaagaTGTTTGTAAATGATTAATTGACAGAATGCCAGACA
ATAATAACGGCATTGGTGCCCCGATCAGCCCAACTAGGATTGATCAAACA
CAACGTCAATCTCTGCATGTTTTTTTACCAAATGGAGAATTCAGAGCTGT
CAAGTTTGGTGATCAATCAGATCTCAAGAGTATTATTGAAATTGTCATCA
GAAGACTAGGTGCTAATATTccattgacttcaaaatattatgGCATCAAA
TTACAAAACtcagaaacaaaaaatttccacTGGCTTAATCCTTCATTGAC
CATGATTGAAATCAAATCCAAACATCGCCATGAAAACACAGATGATACAT
GGAAATACAAGCTAAGAATCCGATATTTGCCAGTCGTAATCAAAGACTTG
TATGGTGTTGACAAAACGACTTTCTATTTCCTCTATGATCAAGTGCGTCA
TGATTATATGAATGAAATTGCTAATAGTGTGGACATTGATCTGGCATTTC
AACTTggtgttttggaaatgaaacgATTCTTCAATAACATGCCACAAGTG
GCTTTGGATAAGAAATCAAATCTCGATTTTATCGAGAAAGAAATTGGTCT
GCAAAGATTNNNNNNNNNNNNNNNNttataatttacttttaccgagattt
tcttcagatttttggttgtagactggataaagtctatgaaggctggatgt
acctcgaaaccaatatttgatgtatttgatgaattttacaagattttttg
gcttttttcgacaaattttcttccttttaatgtAATTCAACTATCCTTTA
tttaacaaaaggtcatttagacaactaattgtaatttttgatgactAAAA
CGAAACtactgatgcatcatgtaattatgcttctttttgatttgataggt
caatttttaacgttt
Run BLAST on NCBI

protein sequence of TCONS_00057965-protein

>TCONS_00057965-protein ID=TCONS_00057965-protein|Name=TCONS_00057965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MPDNNNGIGAPISPTRIDQTQRQSLHVFLPNGEFRAVKFGDQSDLKSIIE
IVIRRLGANIPLTSKYYGIKLQNSETKNFHWLNPSLTMIEIKSKHRHENT
DDTWKYKLRIRYLPVVIKDLYGVDKTTFYFLYDQVRHDYMNEIANSVDID
LAFQLGVLEMKRFFNNMPQVALDKKSNLDFIEKEIGLQRXXXXXXL
Run BLAST on NCBI

transcript from alignment at scaffold_302:139349..141158-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057965 ID=TCONS_00057965|Name=TCONS_00057965|organism=Clytia hemisphaerica|type=transcript|length=1810bp|location=Sequence derived from alignment at scaffold_302:139349..141158- (Clytia hemisphaerica)
TAGAATGTTATTTTTCTTTATAGTGATTACAAATTTATAACTATTATAAA AAATATATTGAAAGATGTTTGTAAATGATTAATTGACAGAATGCCAGACA ATAATAACGGCATTGGTGCCCCGATCAGCCCAACTAGGATTGATCAAACA CAACGTCAATCTCTGCATGTTTTTTTACCAAATGGAGAATTCAGAGCTGT CAAGTTTGGTGATCAATCAGATCTCAAGGTAACATTGTATCCTTGCTTTA GTATGTTATTTCATATTTCTCTGCAGACCACTTTTCACACCATTCTAAGC ACCAGCCAAACACCCTCTTCATGGAATATGGTAAAATAACAGCTGAATTA CATTCCCTCTTTGGCATAGTTAACGCTGTCTGACCTTTCATGAATATGAC CAGGTTTGTATTGCACTGTAATGAAAGGAATTAAAAACATTGTGATGATG TGGTGGGCATTTCTATATGTAAGATTACTTGCAACTTTTTCTTTCAGAGT ATTATTGAAATTGTCATCAGAAGACTAGGTGCTAATATTCCATTGACTTC AAAATATTATGGCATCAAATTACAAAACTCAGAAACAAAAAATTTCCACT GGCTTAATCCTTCATTGACCATGATTGAAATCAAATCCAAACATCGCCAT GAAAACACAGATGATACATGGAAGTAAGTTGTATTAAATTGAAGACTTAA AAGGAATTCTCATTGCAGAACTATAACAAAGCCTTGACTTGGCTTCTGAA AGGTATTCTTTTATTTCTGTTTAAGGTGCTTCCAGACAATTTTATACCCC TCTTACTTGTAAATTTTGATATATTCATTTGTAACATTAATTGATTTTGA ATTCCCCATTTTAGATACAAGCTAAGAATCCGATATTTGCCAGTCGTAAT CAAAGACTTGTATGGTGTTGACAAAACGACTTTCTATTTCCTCTATGATC AAGTAAGTTAACAAAACAATAAAATGTTCATCATTTTACGCTTTGTACAC ATGGAGTATTTACTGTCCTGAGATGACTGTAGCATTTTTAGGTCAAGTTC TTAACTGTTTATTAGCATAGGACAATAAATGTAGAATATTACCCTGGGAT TATAATTTGAATTGTAAGTTATAAATGAAATAAAATCAAATTAGTATACT CACGTCCCTTTTTAGGACAGCCAGATGAATAATTGCATCAGATTGTTCTT TCTTAACGCAGTTTGATATATATTTTTAGGTGCGTCATGATTATATGAAT GAAATTGCTAATAGTGTGGACATTGATCTGGCATTTCAACTTGGTGTTTT GGAAATGAAACGATTCTTCAATAACATGCCACAAGTGGCTTTGGATAAGA AATCAAATCTCGATTTTATCGAGTAAGAATTTTTCTAATGAATTTTCTTT TTCTTTGAGAAACCTGTTGTTAATGTGTTTCATAATGATATATTTTAAAG ATTAATATGTTTCATTTGAATTTCTTACAGGAAAGAAATTGGTCTGCAAA GATTNNNNNNNNNNNNNNNNTTATAATTTACTTTTACCGAGATTTTCTTC AGATTTTTGGTTGTAGACTGGATAAAGTCTATGAAGGCTGGATGTACCTC GAAACCAATATTTGATGTATTTGATGAATTTTACAAGATTTTTTGGCTTT TTTCGACAAATTTTCTTCCTTTTAATGTAATTCAACTATCCTTTATTTAA CAAAAGGTCATTTAGACAACTAATTGTAATTTTTGATGACTAAAACGAAA CTACTGATGCATCATGTAATTATGCTTCTTTTTGATTTGATAGGTCAATT TTTAACGTTT

Coding sequence (CDS) from alignment at scaffold_302:139349..141158-

>TCONS_00057965 ID=TCONS_00057965|Name=TCONS_00057965|organism=Clytia hemisphaerica|type=CDS|length=2955bp|location=Sequence derived from alignment at scaffold_302:139349..141158- (Clytia hemisphaerica)
GAAAGAAATTGGTCTGCAAAGATTNNNNNNNNNNNNNNNNTTATAAGTGC
GTCATGATTATATGAATGAAATTGCTAATAGTGTGGACATTGATCTGGCA
TTTCAACTTGGTGTTTTGGAAATGAAACGATTCTTCAATAACATGCCACA
AGTGGCTTTGGATAAGAAATCAAATCTCGATTTTATCGAATACAAGCTAA
GAATCCGATATTTGCCAGTCGTAATCAAAGACTTGTATGGTGTTGACAAA
ACGACTTTCTATTTCCTCTATGATCAAAGTATTATTGAAATTGTCATCAG
AAGACTAGGTGCTAATATTCCATTGACTTCAAAATATTATGGCATCAAAT
TACAAAACTCAGAAACAAAAAATTTCCACTGGCTTAATCCTTCATTGACC
ATGATTGAAATCAAATCCAAACATCGCCATGAAAACACAGATGATACATG
GAAATGCCAGACAATAATAACGGCATTGGTGCCCCGATCAGCCCAACTAG
GATTGATCAAACACAACGTCAATCTCTGCATGTTTTTTTACCAAATGGAG
AATTCAGAGCTGTCAAGTTTGGTGATCAATCAGATCTCAAGGAAAGAAAT
TGGTCTGCAAAGATTNNNNNNNNNNNNNNNNTTATAAGTGCGTCATGATT
ATATGAATGAAATTGCTAATAGTGTGGACATTGATCTGGCATTTCAACTT
GGTGTTTTGGAAATGAAACGATTCTTCAATAACATGCCACAAGTGGCTTT
GGATAAGAAATCAAATCTCGATTTTATCGAATACAAGCTAAGAATCCGAT
ATTTGCCAGTCGTAATCAAAGACTTGTATGGTGTTGACAAAACGACTTTC
TATTTCCTCTATGATCAAAGTATTATTGAAATTGTCATCAGAAGACTAGG
TGCTAATATTCCATTGACTTCAAAATATTATGGCATCAAATTACAAAACT
CAGAAACAAAAAATTTCCACTGGCTTAATCCTTCATTGACCATGATTGAA
ATCAAATCCAAACATCGCCATGAAAACACAGATGATACATGGAAATGCCA
GACAATAATAACGGCATTGGTGCCCCGATCAGCCCAACTAGGATTGATCA
AACACAACGTCAATCTCTGCATGTTTTTTTACCAAATGGAGAATTCAGAG
CTGTCAAGTTTGGTGATCAATCAGATCTCAAGGAAAGAAATTGGTCTGCA
AAGATTNNNNNNNNNNNNNNNNTTATAAGTGCGTCATGATTATATGAATG
AAATTGCTAATAGTGTGGACATTGATCTGGCATTTCAACTTGGTGTTTTG
GAAATGAAACGATTCTTCAATAACATGCCACAAGTGGCTTTGGATAAGAA
ATCAAATCTCGATTTTATCGAATACAAGCTAAGAATCCGATATTTGCCAG
TCGTAATCAAAGACTTGTATGGTGTTGACAAAACGACTTTCTATTTCCTC
TATGATCAAAGTATTATTGAAATTGTCATCAGAAGACTAGGTGCTAATAT
TCCATTGACTTCAAAATATTATGGCATCAAATTACAAAACTCAGAAACAA
AAAATTTCCACTGGCTTAATCCTTCATTGACCATGATTGAAATCAAATCC
AAACATCGCCATGAAAACACAGATGATACATGGAAATGCCAGACAATAAT
AACGGCATTGGTGCCCCGATCAGCCCAACTAGGATTGATCAAACACAACG
TCAATCTCTGCATGTTTTTTTACCAAATGGAGAATTCAGAGCTGTCAAGT
TTGGTGATCAATCAGATCTCAAGGAAAGAAATTGGTCTGCAAAGATTNNN
NNNNNNNNNNNNNTTATAAGTGCGTCATGATTATATGAATGAAATTGCTA
ATAGTGTGGACATTGATCTGGCATTTCAACTTGGTGTTTTGGAAATGAAA
CGATTCTTCAATAACATGCCACAAGTGGCTTTGGATAAGAAATCAAATCT
CGATTTTATCGAATACAAGCTAAGAATCCGATATTTGCCAGTCGTAATCA
AAGACTTGTATGGTGTTGACAAAACGACTTTCTATTTCCTCTATGATCAA
AGTATTATTGAAATTGTCATCAGAAGACTAGGTGCTAATATTCCATTGAC
TTCAAAATATTATGGCATCAAATTACAAAACTCAGAAACAAAAAATTTCC
ACTGGCTTAATCCTTCATTGACCATGATTGAAATCAAATCCAAACATCGC
CATGAAAACACAGATGATACATGGAAATGCCAGACAATAATAACGGCATT
GGTGCCCCGATCAGCCCAACTAGGATTGATCAAACACAACGTCAATCTCT
GCATGTTTTTTTACCAAATGGAGAATTCAGAGCTGTCAAGTTTGGTGATC
AATCAGATCTCAAGGAAAGAAATTGGTCTGCAAAGATTNNNNNNNNNNNN
NNNNTTATAAGTGCGTCATGATTATATGAATGAAATTGCTAATAGTGTGG
ACATTGATCTGGCATTTCAACTTGGTGTTTTGGAAATGAAACGATTCTTC
AATAACATGCCACAAGTGGCTTTGGATAAGAAATCAAATCTCGATTTTAT
CGAATACAAGCTAAGAATCCGATATTTGCCAGTCGTAATCAAAGACTTGT
ATGGTGTTGACAAAACGACTTTCTATTTCCTCTATGATCAAAGTATTATT
GAAATTGTCATCAGAAGACTAGGTGCTAATATTCCATTGACTTCAAAATA
TTATGGCATCAAATTACAAAACTCAGAAACAAAAAATTTCCACTGGCTTA
ATCCTTCATTGACCATGATTGAAATCAAATCCAAACATCGCCATGAAAAC
ACAGATGATACATGGAAATGCCAGACAATAATAACGGCATTGGTGCCCCG
ATCAGCCCAACTAGGATTGATCAAACACAACGTCAATCTCTGCATGTTTT
TTTACCAAATGGAGAATTCAGAGCTGTCAAGTTTGGTGATCAATCAGATC
TCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036538XLOC_036538Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057965-exon-scaffold_302-1575043694:140931..141158TCONS_00057965-exon-scaffold_302-1575043694:140931..141158Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1575043694:140486..140661TCONS_00057965-exon-scaffold_302-1575043694:140486..140661Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1575043694:140207..140294TCONS_00057965-exon-scaffold_302-1575043694:140207..140294Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1575043694:139787..139929TCONS_00057965-exon-scaffold_302-1575043694:139787..139929Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1575043694:139349..139678TCONS_00057965-exon-scaffold_302-1575043694:139349..139678Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1510915933:140931..141158TCONS_00057965-exon-scaffold_302-1510915933:140931..141158Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1510915933:140486..140661TCONS_00057965-exon-scaffold_302-1510915933:140486..140661Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1510915933:140207..140294TCONS_00057965-exon-scaffold_302-1510915933:140207..140294Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1510915933:139787..139929TCONS_00057965-exon-scaffold_302-1510915933:139787..139929Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1510915933:139349..139678TCONS_00057965-exon-scaffold_302-1510915933:139349..139678Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1491911889:140931..141158TCONS_00057965-exon-scaffold_302-1491911889:140931..141158Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1491911889:140486..140661TCONS_00057965-exon-scaffold_302-1491911889:140486..140661Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1491911889:140207..140294TCONS_00057965-exon-scaffold_302-1491911889:140207..140294Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1491911889:139787..139929TCONS_00057965-exon-scaffold_302-1491911889:139787..139929Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1491911889:139349..139678TCONS_00057965-exon-scaffold_302-1491911889:139349..139678Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057965-proteinTCONS_00057965-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:139349..141158 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (3.17845 tpm) - - (28.9736 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.97559 4.4225 3.50878 3.17845 28.9736 22.0539 15.6867 17.9053 8.68132 10.8175 8.7671 7.76129 6.10382 4.90582 5.99698 6.87512 10.2684 11.5266 4.96276 7.34331 10.9925 13.0527 11.2965 14.3744 8.56541 10.7921 12.6304 11.6817 11.7691 14.8517
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014352FERM/acyl-CoA-bd_prot_3-hlx
IPR000299FERM_domain
IPR019748FERM_central
IPR029071Ubiquitin-rel_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005856 cytoskeleton
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
100200300400500600700800900Expect = 2.80e-34 / Id = 40.12SequenceFAK2
Match NameE-valueIdentityDescription
FAK22.803e-3440.12Protein-tyrosine kinase 2-beta OS=Homo sapiens GN=... [more]
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