Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057965 ID=TCONS_00057965|Name=TCONS_00057965|organism=Clytia hemisphaerica|type=transcript|length=965bp tagaatgttatttttctttatagtGATTACAAATTTATAactattataaa aaatatattgaaagaTGTTTGTAAATGATTAATTGACAGAATGCCAGACA ATAATAACGGCATTGGTGCCCCGATCAGCCCAACTAGGATTGATCAAACA CAACGTCAATCTCTGCATGTTTTTTTACCAAATGGAGAATTCAGAGCTGT CAAGTTTGGTGATCAATCAGATCTCAAGAGTATTATTGAAATTGTCATCA GAAGACTAGGTGCTAATATTccattgacttcaaaatattatgGCATCAAA TTACAAAACtcagaaacaaaaaatttccacTGGCTTAATCCTTCATTGAC CATGATTGAAATCAAATCCAAACATCGCCATGAAAACACAGATGATACAT GGAAATACAAGCTAAGAATCCGATATTTGCCAGTCGTAATCAAAGACTTG TATGGTGTTGACAAAACGACTTTCTATTTCCTCTATGATCAAGTGCGTCA TGATTATATGAATGAAATTGCTAATAGTGTGGACATTGATCTGGCATTTC AACTTggtgttttggaaatgaaacgATTCTTCAATAACATGCCACAAGTG GCTTTGGATAAGAAATCAAATCTCGATTTTATCGAGAAAGAAATTGGTCT GCAAAGATTNNNNNNNNNNNNNNNNttataatttacttttaccgagattt tcttcagatttttggttgtagactggataaagtctatgaaggctggatgt acctcgaaaccaatatttgatgtatttgatgaattttacaagattttttg gcttttttcgacaaattttcttccttttaatgtAATTCAACTATCCTTTA tttaacaaaaggtcatttagacaactaattgtaatttttgatgactAAAA CGAAACtactgatgcatcatgtaattatgcttctttttgatttgataggt caatttttaacgttt Run BLAST on NCBI protein sequence of TCONS_00057965-protein >TCONS_00057965-protein ID=TCONS_00057965-protein|Name=TCONS_00057965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MPDNNNGIGAPISPTRIDQTQRQSLHVFLPNGEFRAVKFGDQSDLKSIIE IVIRRLGANIPLTSKYYGIKLQNSETKNFHWLNPSLTMIEIKSKHRHENT DDTWKYKLRIRYLPVVIKDLYGVDKTTFYFLYDQVRHDYMNEIANSVDID LAFQLGVLEMKRFFNNMPQVALDKKSNLDFIEKEIGLQRXXXXXXL Run BLAST on NCBI transcript from alignment at scaffold_302:139349..141158- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057965 ID=TCONS_00057965|Name=TCONS_00057965|organism=Clytia hemisphaerica|type=transcript|length=1810bp|location=Sequence derived from alignment at scaffold_302:139349..141158- (Clytia hemisphaerica) TAGAATGTTATTTTTCTTTATAGTGATTACAAATTTATAACTATTATAAA
AAATATATTGAAAGATGTTTGTAAATGATTAATTGACAGAATGCCAGACA
ATAATAACGGCATTGGTGCCCCGATCAGCCCAACTAGGATTGATCAAACA
CAACGTCAATCTCTGCATGTTTTTTTACCAAATGGAGAATTCAGAGCTGT
CAAGTTTGGTGATCAATCAGATCTCAAGGTAACATTGTATCCTTGCTTTA
GTATGTTATTTCATATTTCTCTGCAGACCACTTTTCACACCATTCTAAGC
ACCAGCCAAACACCCTCTTCATGGAATATGGTAAAATAACAGCTGAATTA
CATTCCCTCTTTGGCATAGTTAACGCTGTCTGACCTTTCATGAATATGAC
CAGGTTTGTATTGCACTGTAATGAAAGGAATTAAAAACATTGTGATGATG
TGGTGGGCATTTCTATATGTAAGATTACTTGCAACTTTTTCTTTCAGAGT
ATTATTGAAATTGTCATCAGAAGACTAGGTGCTAATATTCCATTGACTTC
AAAATATTATGGCATCAAATTACAAAACTCAGAAACAAAAAATTTCCACT
GGCTTAATCCTTCATTGACCATGATTGAAATCAAATCCAAACATCGCCAT
GAAAACACAGATGATACATGGAAGTAAGTTGTATTAAATTGAAGACTTAA
AAGGAATTCTCATTGCAGAACTATAACAAAGCCTTGACTTGGCTTCTGAA
AGGTATTCTTTTATTTCTGTTTAAGGTGCTTCCAGACAATTTTATACCCC
TCTTACTTGTAAATTTTGATATATTCATTTGTAACATTAATTGATTTTGA
ATTCCCCATTTTAGATACAAGCTAAGAATCCGATATTTGCCAGTCGTAAT
CAAAGACTTGTATGGTGTTGACAAAACGACTTTCTATTTCCTCTATGATC
AAGTAAGTTAACAAAACAATAAAATGTTCATCATTTTACGCTTTGTACAC
ATGGAGTATTTACTGTCCTGAGATGACTGTAGCATTTTTAGGTCAAGTTC
TTAACTGTTTATTAGCATAGGACAATAAATGTAGAATATTACCCTGGGAT
TATAATTTGAATTGTAAGTTATAAATGAAATAAAATCAAATTAGTATACT
CACGTCCCTTTTTAGGACAGCCAGATGAATAATTGCATCAGATTGTTCTT
TCTTAACGCAGTTTGATATATATTTTTAGGTGCGTCATGATTATATGAAT
GAAATTGCTAATAGTGTGGACATTGATCTGGCATTTCAACTTGGTGTTTT
GGAAATGAAACGATTCTTCAATAACATGCCACAAGTGGCTTTGGATAAGA
AATCAAATCTCGATTTTATCGAGTAAGAATTTTTCTAATGAATTTTCTTT
TTCTTTGAGAAACCTGTTGTTAATGTGTTTCATAATGATATATTTTAAAG
ATTAATATGTTTCATTTGAATTTCTTACAGGAAAGAAATTGGTCTGCAAA
GATTNNNNNNNNNNNNNNNNTTATAATTTACTTTTACCGAGATTTTCTTC
AGATTTTTGGTTGTAGACTGGATAAAGTCTATGAAGGCTGGATGTACCTC
GAAACCAATATTTGATGTATTTGATGAATTTTACAAGATTTTTTGGCTTT
TTTCGACAAATTTTCTTCCTTTTAATGTAATTCAACTATCCTTTATTTAA
CAAAAGGTCATTTAGACAACTAATTGTAATTTTTGATGACTAAAACGAAA
CTACTGATGCATCATGTAATTATGCTTCTTTTTGATTTGATAGGTCAATT
TTTAACGTTT Coding sequence (CDS) from alignment at scaffold_302:139349..141158- >TCONS_00057965 ID=TCONS_00057965|Name=TCONS_00057965|organism=Clytia hemisphaerica|type=CDS|length=2955bp|location=Sequence derived from alignment at scaffold_302:139349..141158- (Clytia hemisphaerica) GAAAGAAATTGGTCTGCAAAGATTNNNNNNNNNNNNNNNNTTATAAGTGC GTCATGATTATATGAATGAAATTGCTAATAGTGTGGACATTGATCTGGCA TTTCAACTTGGTGTTTTGGAAATGAAACGATTCTTCAATAACATGCCACA AGTGGCTTTGGATAAGAAATCAAATCTCGATTTTATCGAATACAAGCTAA GAATCCGATATTTGCCAGTCGTAATCAAAGACTTGTATGGTGTTGACAAA ACGACTTTCTATTTCCTCTATGATCAAAGTATTATTGAAATTGTCATCAG AAGACTAGGTGCTAATATTCCATTGACTTCAAAATATTATGGCATCAAAT TACAAAACTCAGAAACAAAAAATTTCCACTGGCTTAATCCTTCATTGACC ATGATTGAAATCAAATCCAAACATCGCCATGAAAACACAGATGATACATG GAAATGCCAGACAATAATAACGGCATTGGTGCCCCGATCAGCCCAACTAG GATTGATCAAACACAACGTCAATCTCTGCATGTTTTTTTACCAAATGGAG AATTCAGAGCTGTCAAGTTTGGTGATCAATCAGATCTCAAGGAAAGAAAT TGGTCTGCAAAGATTNNNNNNNNNNNNNNNNTTATAAGTGCGTCATGATT ATATGAATGAAATTGCTAATAGTGTGGACATTGATCTGGCATTTCAACTT GGTGTTTTGGAAATGAAACGATTCTTCAATAACATGCCACAAGTGGCTTT GGATAAGAAATCAAATCTCGATTTTATCGAATACAAGCTAAGAATCCGAT ATTTGCCAGTCGTAATCAAAGACTTGTATGGTGTTGACAAAACGACTTTC TATTTCCTCTATGATCAAAGTATTATTGAAATTGTCATCAGAAGACTAGG TGCTAATATTCCATTGACTTCAAAATATTATGGCATCAAATTACAAAACT CAGAAACAAAAAATTTCCACTGGCTTAATCCTTCATTGACCATGATTGAA ATCAAATCCAAACATCGCCATGAAAACACAGATGATACATGGAAATGCCA GACAATAATAACGGCATTGGTGCCCCGATCAGCCCAACTAGGATTGATCA AACACAACGTCAATCTCTGCATGTTTTTTTACCAAATGGAGAATTCAGAG CTGTCAAGTTTGGTGATCAATCAGATCTCAAGGAAAGAAATTGGTCTGCA AAGATTNNNNNNNNNNNNNNNNTTATAAGTGCGTCATGATTATATGAATG AAATTGCTAATAGTGTGGACATTGATCTGGCATTTCAACTTGGTGTTTTG GAAATGAAACGATTCTTCAATAACATGCCACAAGTGGCTTTGGATAAGAA ATCAAATCTCGATTTTATCGAATACAAGCTAAGAATCCGATATTTGCCAG TCGTAATCAAAGACTTGTATGGTGTTGACAAAACGACTTTCTATTTCCTC TATGATCAAAGTATTATTGAAATTGTCATCAGAAGACTAGGTGCTAATAT TCCATTGACTTCAAAATATTATGGCATCAAATTACAAAACTCAGAAACAA AAAATTTCCACTGGCTTAATCCTTCATTGACCATGATTGAAATCAAATCC AAACATCGCCATGAAAACACAGATGATACATGGAAATGCCAGACAATAAT AACGGCATTGGTGCCCCGATCAGCCCAACTAGGATTGATCAAACACAACG TCAATCTCTGCATGTTTTTTTACCAAATGGAGAATTCAGAGCTGTCAAGT TTGGTGATCAATCAGATCTCAAGGAAAGAAATTGGTCTGCAAAGATTNNN NNNNNNNNNNNNNTTATAAGTGCGTCATGATTATATGAATGAAATTGCTA ATAGTGTGGACATTGATCTGGCATTTCAACTTGGTGTTTTGGAAATGAAA CGATTCTTCAATAACATGCCACAAGTGGCTTTGGATAAGAAATCAAATCT CGATTTTATCGAATACAAGCTAAGAATCCGATATTTGCCAGTCGTAATCA AAGACTTGTATGGTGTTGACAAAACGACTTTCTATTTCCTCTATGATCAA AGTATTATTGAAATTGTCATCAGAAGACTAGGTGCTAATATTCCATTGAC TTCAAAATATTATGGCATCAAATTACAAAACTCAGAAACAAAAAATTTCC ACTGGCTTAATCCTTCATTGACCATGATTGAAATCAAATCCAAACATCGC CATGAAAACACAGATGATACATGGAAATGCCAGACAATAATAACGGCATT GGTGCCCCGATCAGCCCAACTAGGATTGATCAAACACAACGTCAATCTCT GCATGTTTTTTTACCAAATGGAGAATTCAGAGCTGTCAAGTTTGGTGATC AATCAGATCTCAAGGAAAGAAATTGGTCTGCAAAGATTNNNNNNNNNNNN NNNNTTATAAGTGCGTCATGATTATATGAATGAAATTGCTAATAGTGTGG ACATTGATCTGGCATTTCAACTTGGTGTTTTGGAAATGAAACGATTCTTC AATAACATGCCACAAGTGGCTTTGGATAAGAAATCAAATCTCGATTTTAT CGAATACAAGCTAAGAATCCGATATTTGCCAGTCGTAATCAAAGACTTGT ATGGTGTTGACAAAACGACTTTCTATTTCCTCTATGATCAAAGTATTATT GAAATTGTCATCAGAAGACTAGGTGCTAATATTCCATTGACTTCAAAATA TTATGGCATCAAATTACAAAACTCAGAAACAAAAAATTTCCACTGGCTTA ATCCTTCATTGACCATGATTGAAATCAAATCCAAACATCGCCATGAAAAC ACAGATGATACATGGAAATGCCAGACAATAATAACGGCATTGGTGCCCCG ATCAGCCCAACTAGGATTGATCAAACACAACGTCAATCTCTGCATGTTTT TTTACCAAATGGAGAATTCAGAGCTGTCAAGTTTGGTGATCAATCAGATC TCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057965-exon-scaffold_302-1575043694:140931..141158 | TCONS_00057965-exon-scaffold_302-1575043694:140931..141158 | Clytia hemisphaerica | exon |
TCONS_00057965-exon-scaffold_302-1575043694:140486..140661 | TCONS_00057965-exon-scaffold_302-1575043694:140486..140661 | Clytia hemisphaerica | exon |
TCONS_00057965-exon-scaffold_302-1575043694:140207..140294 | TCONS_00057965-exon-scaffold_302-1575043694:140207..140294 | Clytia hemisphaerica | exon |
TCONS_00057965-exon-scaffold_302-1575043694:139787..139929 | TCONS_00057965-exon-scaffold_302-1575043694:139787..139929 | Clytia hemisphaerica | exon |
TCONS_00057965-exon-scaffold_302-1575043694:139349..139678 | TCONS_00057965-exon-scaffold_302-1575043694:139349..139678 | Clytia hemisphaerica | exon |
TCONS_00057965-exon-scaffold_302-1510915933:140931..141158 | TCONS_00057965-exon-scaffold_302-1510915933:140931..141158 | Clytia hemisphaerica | exon |
TCONS_00057965-exon-scaffold_302-1510915933:140486..140661 | TCONS_00057965-exon-scaffold_302-1510915933:140486..140661 | Clytia hemisphaerica | exon |
TCONS_00057965-exon-scaffold_302-1510915933:140207..140294 | TCONS_00057965-exon-scaffold_302-1510915933:140207..140294 | Clytia hemisphaerica | exon |
TCONS_00057965-exon-scaffold_302-1510915933:139787..139929 | TCONS_00057965-exon-scaffold_302-1510915933:139787..139929 | Clytia hemisphaerica | exon |
TCONS_00057965-exon-scaffold_302-1510915933:139349..139678 | TCONS_00057965-exon-scaffold_302-1510915933:139349..139678 | Clytia hemisphaerica | exon |
TCONS_00057965-exon-scaffold_302-1491911889:140931..141158 | TCONS_00057965-exon-scaffold_302-1491911889:140931..141158 | Clytia hemisphaerica | exon |
TCONS_00057965-exon-scaffold_302-1491911889:140486..140661 | TCONS_00057965-exon-scaffold_302-1491911889:140486..140661 | Clytia hemisphaerica | exon |
TCONS_00057965-exon-scaffold_302-1491911889:140207..140294 | TCONS_00057965-exon-scaffold_302-1491911889:140207..140294 | Clytia hemisphaerica | exon |
TCONS_00057965-exon-scaffold_302-1491911889:139787..139929 | TCONS_00057965-exon-scaffold_302-1491911889:139787..139929 | Clytia hemisphaerica | exon |
TCONS_00057965-exon-scaffold_302-1491911889:139349..139678 | TCONS_00057965-exon-scaffold_302-1491911889:139349..139678 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_302 | supercontig | scaffold_302:139349..141158 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
Term | Definition |
GO:0005856 | cytoskeleton |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0005856 |
cytoskeleton |
Blast
BLAST of TCONS_00057965 vs. Swiss-Prot (Human)
Match: FAK2 (Protein-tyrosine kinase 2-beta OS=Homo sapiens GN=PTK2B PE=1 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 2.803e-34 Identity = 65/162 (40.12%), Postives = 104/162 (64.20%), Query Frame = 1 Query: 172 FLPNGEFRAVKFGDQSDLKSIIEIVI--RRLGANIPLTSKYYGIKLQNSETKNFHWLNPSLTMIEIKSKHRHENTDDTWKYKLRIRYLPVVIKDLYGVDKTTFYFLYDQVRHDYMNEIANSVDIDLAFQLGVLEMKRFFNNMPQVALDKKSNLDFIEKEIGL 651
F P F+ VK Q++++ II ++ R+G NI L ++ YG++L++ ++ HWL+P +T+ E++ K+ + + W+Y L+IRYLP + D+TT + Y Q+R+DYM A+ V +A QLG LE++RFF +MP ALDKKSN + +EKE+GL
Sbjct: 50 FNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRL-AECYGLRLKHMKSDEIHWLHPQMTVGEVQDKYECLHVEAEWRYDLQIRYLPEDFMESLKEDRTTLLYFYQQLRNDYMQRYASKVSEGMALQLGCLELRRFFKDMPHNALDKKSNFELLEKEVGL 210
The following BLAST results are available for this feature:
|