TCONS_00057996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057996
Unique NameTCONS_00057996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057996 ID=TCONS_00057996|Name=TCONS_00057996|organism=Clytia hemisphaerica|type=transcript|length=630bp
AGCTAAGACTACATTAGAGAAAGAAGAGGTACTAATTGACGTGTCTGAGT
TTAAGAACGCATCAGTCGTTCAATTGATGGAAAACTCTGGATTCATCAAC
AGAGTAAAGACCAGTATGGGAGAGAAACTTCAATTTTACCACATTATGAT
GCAGGAGTTTCTAACGgctgttttttatttcaaacctGGACTAGATGACA
ATgaacttttatcaaaaactaTTTACTCTGGGGTAGCACCTCTTTATGCA
GGATTAAGTGGAGGATGTTTATCCCCTTCCAACTCATCCAAAAACGTCAT
CGCCTTTATGAAATATATGAACCTATGCATAAAAAATGTCTCGAAGCTAT
CATTTGCTGACCGATCATTGAGGAGTGAATCGTTTCtggaaattttattt
gaataCCGAAATAACTTGGATCCTCCCATGGTTGGTGTCTGCAACTCTTC
CATTGATTTTCTCGAAAAACCACTTTCGTTGGGTTATCTAAATTATTTTA
AAGCTCTTCCAATCGGACATTATCGAAATGAAAATCTAACATACGTGCTG
TGTACAAAATCTCCGAAATTTTACATATTAAATAGTATATTAGACCACTG
TAACCCTCTCCAATCCAACGAAAGCTATAC
Run BLAST on NCBI

protein sequence of TCONS_00057996-protein

>TCONS_00057996-protein ID=TCONS_00057996-protein|Name=TCONS_00057996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
AKTTLEKEEVLIDVSEFKNASVVQLMENSGFINRVKTSMGEKLQFYHIMM
QEFLTAVFYFKPGLDDNELLSKTIYSGVAPLYAGLSGGCLSPSNSSKNVI
AFMKYMNLCIKNVSKLSFADRSLRSESFLEILFEYRNNLDPPMVGVCNSS
IDFLEKPLSLGYLNYFKALPIGHYRNENLTYVLCTKSPKFYILNSILDHC
NPLQSNESY
Run BLAST on NCBI

transcript from alignment at scaffold_302:177414..178043

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057996 ID=TCONS_00057996|Name=TCONS_00057996|organism=Clytia hemisphaerica|type=transcript|length=630bp|location=Sequence derived from alignment at scaffold_302:177414..178043 (Clytia hemisphaerica)
GTATAGCTTTCGTTGGATTGGAGAGGGTTACAGTGGTCTAATATACTATT
TAATATGTAAAATTTCGGAGATTTTGTACACAGCACGTATGTTAGATTTT
CATTTCGATAATGTCCGATTGGAAGAGCTTTAAAATAATTTAGATAACCC
AACGAAAGTGGTTTTTCGAGAAAATCAATGGAAGAGTTGCAGACACCAAC
CATGGGAGGATCCAAGTTATTTCGGtattcaaataaaatttccaGAAACG
ATTCACTCCTCAATGATCGGTCAGCAAATGATAGCTTCGAGACATTTTTT
ATGCATAGGTTCATATATTTCATAAAGGCGATGACGTTTTTGGATGAGTT
GGAAGGGGATAAACATCCTCCACTTAATCCTGCATAAAGAGGTGCTACCC
CAGAGTAAAtagtttttgataaaagttcATTGTCATCTAGTCCaggtttg
aaataaaaaacagcCGTTAGAAACTCCTGCATCATAATGTGGTAAAATTG
AAGTTTCTCTCCCATACTGGTCTTTACTCTGTTGATGAATCCAGAGTTTT
CCATCAATTGAACGACTGATGCGTTCTTAAACTCAGACACGTCAATTAGT
ACCTCTTCTTTCTCTAATGTAGTCTTAGCT

Coding sequence (CDS) from alignment at scaffold_302:177414..178043

>TCONS_00057996 ID=TCONS_00057996|Name=TCONS_00057996|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_302:177414..178043 (Clytia hemisphaerica)
ATAGCTTTCGTTGGATTGGAGAGGGTTACAGTGGTCTAATATACTATTTA
ATATGTAAAATTTCGGAGATTTTGTACACAGCACGTATGTTAGATTTTCA
TTTCGATAATGTCCGATTGGAAGAGCTTTAAAATAATTTAGATAACCCAA
CGAAAGTGGTTTTTCGAGAAAATCAATGGAAGAGTTGCAGACACCAACCA
TGGGAGGATCCAAGTTATTTCGGtattcaaataaaatttccaGAAACGAT
TCACTCCTCAATGATCGGTCAGCAAATGATAGCTTCGAGACATTTTTTAT
GCATAGGTTCATATATTTCATAAAGGCGATGACGTTTTTGGATGAGTTGG
AAGGGGATAAACATCCTCCACTTAATCCTGCATAAAGAGGTGCTACCCCA
GAGTAAAtagtttttgataaaagttcATTGTCATCTAGTCCaggtttgaa
ataaaaaacagcCGTTAGAAACTCCTGCATCATAATGTGGTAAAATTGAA
GTTTCTCTCCCATACTGGTCTTTACTCTGTTGATGAATCCAGAGTTTTCC
ATCAATTGAACGACTGATGCGTTCTTAAACTCAGACACGTCAATTAGTAC
CTCTTCTTTCTCTAATGTAGTCTTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036552XLOC_036552Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057996-proteinTCONS_00057996-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057996-exon-scaffold_302-1491911889:177414..178043TCONS_00057996-exon-scaffold_302-1491911889:177414..178043Clytia hemisphaericaexon
TCONS_00057996-exon-scaffold_302-1510915933:177414..178043TCONS_00057996-exon-scaffold_302-1510915933:177414..178043Clytia hemisphaericaexon
TCONS_00057996-exon-scaffold_302-1575043694:177414..178043TCONS_00057996-exon-scaffold_302-1575043694:177414..178043Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:177414..178043 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0821767	0.095415	0.280046	0.113643	0.179605	0.43337	0.405716	0.355064	0.0879609	0	0.336741	0.504409	0.698445	0.382811	0.82163	0.0632613	0.129682	0.358324	2.15602	0.814772	0.357675	0.193245	0.0878439	1.08573	0.565241	0.346653	0.616596	0.467667	0.0952957
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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