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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057999 ID=TCONS_00057999|Name=TCONS_00057999|organism=Clytia hemisphaerica|type=transcript|length=1450bp
TTTCCAAATAACACTATATTTtgcaacatattcttttttaacTGACAAAG
CTCTGTAGTTTGAATCAGCTTTTTTTGCTTCATTTAAGAGAAGGCCAAAT
TACTTTGACCGGGATGTTCGCTGTTTAATGACATTAGATTGCTTCTTTCT
TGTTCTAAAACAGACCAATATTGTATTTGTCTTCAAACACTGAAAATACT
GAACATAACTTGAGTGTGGTTGATAGCTTCATAAAAGCTCAAGTAAATCT
TTATCGTATAGACTCGGCTGGGGGATACATTTCAAAACACTGGTCTCAAT
ATTTCTGGACAGTTTCATAAGAAGGAGAGAACAATCCGGGATTCATCAAG
TTATCGATTCTCCTTCATACATTTAAACAAGTCAAGGAGACATCAAAGAA
AGGGCACAATGAATATGTTCATGATTTCCATCAGTCATTTTGTGTTGACA
TTTATTGGAGGATCAGGAAACCTTATCGCTATATGGTGCCTTTACAAAGA
AACTATGTCATTTTCATCCATGGAAGATCATAACATCTTCATTTTATCTC
TTGCTATTTCTGATCTTTTAGTTAGTTTGGTATATCAGCCATTATCAGGC
ATTCAGTTTGTTATCGGGAGACCTATACAAGCATCGGTCATTCGTTATAT
ATCAGGAGTTCTACTGTCCATGTCTTTATTGAACCTCAGTTTGCTTTCAC
TGGAACGTGTCATGAAGATTACTTTACCGAACAAACATGATTCTTGGatg
gaaaaagggaaaattatAAAGTTGATTTTGATGTGCTGGGTATTCGAAGG
AATCATTAATTCCACATCGTTCTTCTATCCAACACTTTTCGGGATCACAC
AAATGTTGCATATTGTAGGAACTCTTCTTGTTCTAATCATAAGTTATACT
TTGGTCTACCGCCAAAAGAGAAGATCGACAAAGACTTTGGTATCATTCAG
TACTTCTAAATGTCAGAGCAGTAATCCTTCCAATTCCGAAGTCTCTAACT
TAACCATCAAACAAATGAAGAATCAAGAACGGAGCTTAATCAAAAGCGTT
TTAATCTTGTTATTGACTCATTTCGTGTTTTTTGGTATAATCTTAATTAT
GGTGGGCAGCGCCATATCAACTGCTGATGATCCTAGAGACTTTGCATTCT
TCCTTGGAACTTTAATTGCTACGGTGAATCCAAGTTGTGTTAACCCTATC
TTTTATGTTTTCAGGacgaaaaaaatcagaaagagaCTTCCTAATATATT
TTGCTGTCGAAGGAAAAGAGTAGTTCCTGAGTAACGTTCAATGGAACTTT
AGGTGTCGTTGCATGATTTTTTCCTGTCGTGCTGTTTACGTTAGgtgaat
tttcacatgaaaaaatggcttagagggaaaacgcttcttggattggcttg
aaacttttgttttttttgactaattAGGCTTTTAACAGACATAAAAATGC Run BLAST on NCBI protein sequence of TCONS_00057999-protein >TCONS_00057999-protein ID=TCONS_00057999-protein|Name=TCONS_00057999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MNMFMISISHFVLTFIGGSGNLIAIWCLYKETMSFSSMEDHNIFILSLAI
SDLLVSLVYQPLSGIQFVIGRPIQASVIRYISGVLLSMSLLNLSLLSLER
VMKITLPNKHDSWMEKGKIIKLILMCWVFEGIINSTSFFYPTLFGITQML
HIVGTLLVLIISYTLVYRQKRRSTKTLVSFSTSKCQSSNPSNSEVSNLTI
KQMKNQERSLIKSVLILLLTHFVFFGIILIMVGSAISTADDPRDFAFFLG
TLIATVNPSCVNPIFYVFRTKKIRKRLPNIFCCRRKRVVPE Run BLAST on NCBI transcript from alignment at scaffold_302:311749..313198 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057999 ID=TCONS_00057999|Name=TCONS_00057999|organism=Clytia hemisphaerica|type=transcript|length=1450bp|location=Sequence derived from alignment at scaffold_302:311749..313198 (Clytia hemisphaerica)
GCATTTTTATGTCTGTTAAAAGCCTaattagtcaaaaaaaacaaaagttt
caagccaatccaagaagcgttttccctctaagccattttttcatgtgaaa
attcacCTAACGTAAACAGCACGACAGGAAAAAATCATGCAACGACACCT
AAAGTTCCATTGAACGTTACTCAGGAACTACTCTTTTCCTTCGACAGCAA
AATATATTAGGAAGtctctttctgatttttttcgtCCTGAAAACATAAAA
GATAGGGTTAACACAACTTGGATTCACCGTAGCAATTAAAGTTCCAAGGA
AGAATGCAAAGTCTCTAGGATCATCAGCAGTTGATATGGCGCTGCCCACC
ATAATTAAGATTATACCAAAAAACACGAAATGAGTCAATAACAAGATTAA
AACGCTTTTGATTAAGCTCCGTTCTTGATTCTTCATTTGTTTGATGGTTA
AGTTAGAGACTTCGGAATTGGAAGGATTACTGCTCTGACATTTAGAAGTA
CTGAATGATACCAAAGTCTTTGTCGATCTTCTCTTTTGGCGGTAGACCAA
AGTATAACTTATGATTAGAACAAGAAGAGTTCCTACAATATGCAACATTT
GTGTGATCCCGAAAAGTGTTGGATAGAAGAACGATGTGGAATTAATGATT
CCTTCGAATACCCAGCACATCAAAATCAACTTTataattttccctttttc
catCCAAGAATCATGTTTGTTCGGTAAAGTAATCTTCATGACACGTTCCA
GTGAAAGCAAACTGAGGTTCAATAAAGACATGGACAGTAGAACTCCTGAT
ATATAACGAATGACCGATGCTTGTATAGGTCTCCCGATAACAAACTGAAT
GCCTGATAATGGCTGATATACCAAACTAACTAAAAGATCAGAAATAGCAA
GAGATAAAATGAAGATGTTATGATCTTCCATGGATGAAAATGACATAGTT
TCTTTGTAAAGGCACCATATAGCGATAAGGTTTCCTGATCCTCCAATAAA
TGTCAACACAAAATGACTGATGGAAATCATGAACATATTCATTGTGCCCT
TTCTTTGATGTCTCCTTGACTTGTTTAAATGTATGAAGGAGAATCGATAA
CTTGATGAATCCCGGATTGTTCTCTCCTTCTTATGAAACTGTCCAGAAAT
ATTGAGACCAGTGTTTTGAAATGTATCCCCCAGCCGAGTCTATACGATAA
AGATTTACTTGAGCTTTTATGAAGCTATCAACCACACTCAAGTTATGTTC
AGTATTTTCAGTGTTTGAAGACAAATACAATATTGGTCTGTTTTAGAACA
AGAAAGAAGCAATCTAATGTCATTAAACAGCGAACATCCCGGTCAAAGTA
ATTTGGCCTTCTCTTAAATGAAGCAAAAAAAGCTGATTCAAACTACAGAG
CTTTGTCAgttaaaaaagaatatgttgcaAAATATAGTGTTATTTGGAAA
Coding sequence (CDS) from alignment at scaffold_302:311749..313198 >TCONS_00057999 ID=TCONS_00057999|Name=TCONS_00057999|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_302:311749..313198 (Clytia hemisphaerica)
TTACTCAGGAACTACTCTTTTCCTTCGACAGCAAAATATATTAGGAAGtc
tctttctgatttttttcgtCCTGAAAACATAAAAGATAGGGTTAACACAA
CTTGGATTCACCGTAGCAATTAAAGTTCCAAGGAAGAATGCAAAGTCTCT
AGGATCATCAGCAGTTGATATGGCGCTGCCCACCATAATTAAGATTATAC
CAAAAAACACGAAATGAGTCAATAACAAGATTAAAACGCTTTTGATTAAG
CTCCGTTCTTGATTCTTCATTTGTTTGATGGTTAAGTTAGAGACTTCGGA
ATTGGAAGGATTACTGCTCTGACATTTAGAAGTACTGAATGATACCAAAG
TCTTTGTCGATCTTCTCTTTTGGCGGTAGACCAAAGTATAACTTATGATT
AGAACAAGAAGAGTTCCTACAATATGCAACATTTGTGTGATCCCGAAAAG
TGTTGGATAGAAGAACGATGTGGAATTAATGATTCCTTCGAATACCCAGC
ACATCAAAATCAACTTTataattttccctttttccatCCAAGAATCATGT
TTGTTCGGTAAAGTAATCTTCATGACACGTTCCAGTGAAAGCAAACTGAG
GTTCAATAAAGACATGGACAGTAGAACTCCTGATATATAACGAATGACCG
ATGCTTGTATAGGTCTCCCGATAACAAACTGAATGCCTGATAATGGCTGA
TATACCAAACTAACTAAAAGATCAGAAATAGCAAGAGATAAAATGAAGAT
GTTATGATCTTCCATGGATGAAAATGACATAGTTTCTTTGTAAAGGCACC
ATATAGCGATAAGGTTTCCTGATCCTCCAATAAATGTCAACACAAAATGA
CTGATGGAAATCATGAACATATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057999-exon-scaffold_302-1491911889:311749..313198 | TCONS_00057999-exon-scaffold_302-1491911889:311749..313198 | Clytia hemisphaerica | exon |
| TCONS_00057999-exon-scaffold_302-1510915933:311749..313198 | TCONS_00057999-exon-scaffold_302-1510915933:311749..313198 | Clytia hemisphaerica | exon |
| TCONS_00057999-exon-scaffold_302-1575043694:311749..313198 | TCONS_00057999-exon-scaffold_302-1575043694:311749..313198 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_302 | supercontig | scaffold_302:311749..313198 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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