TCONS_00057985 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00057985
Unique Name	TCONS_00057985
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	289

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_302:323587..329523-

transcript sequence

>TCONS_00057985 ID=TCONS_00057985|Name=TCONS_00057985|organism=Clytia hemisphaerica|type=transcript|length=289bp
CATTTCCCTTGTTTTGTGCTTGACCGGTGCCCGCCCGACAACTGTGGTTT
TTATAAAATGGAGTATAGACACATATTCATTCAGAAAAAACCTTTACTAA
GACTCAATCAAGCATACTTTAATGTAACTTCTGCAGAAACTTTGTAAATA
TTGGTATATTTTTCATAAAGGCATTGCCAAAATGATAAATCACTGGAGTT
GGTCGATTTTCTTGCTTAAGCCGGCTGTCTACTGCGCTGTCACTTTGACT
CTTTACTATAATATAATTAAAAACAATTGTGGGTAAAAT

Run BLAST on NCBI

transcript from alignment at scaffold_302:323587..329523-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00057985 ID=TCONS_00057985|Name=TCONS_00057985|organism=Clytia hemisphaerica|type=transcript|length=5937bp|location=Sequence derived from alignment at scaffold_302:323587..329523- (Clytia hemisphaerica)
CATTTCCCTTGTTTTGTGCTTGACCGGTGCCCGCCCGACAACTGTGGTTT
TTATAAAATGGAGTATAGACACATATTCATTCAGAAAAAAACCTTTACTA
AGACTCAATCAAGCATACTATAATGTAGCTTCTGCAGAAACTTTGTCAAT
ATTGGTATATTTTTAATAAAGGCATTGCCAAAATGATAAATCACTGGAGT
TGGTCGATTTTCTTGCTTAAGCCGGCTGTCTACTGCGCTGTCACTTTGAC
TCTTTACTATAATATAATTAAAAACAATTGTGGGTAAATGTGTGCCAATA
ATATATCCTATATCGTATATTCTTTATCACACATGAAATTAATCTAAAAT
ATATATTTTTTGTTATTCAATTTCAGTAGGAATTGTTGGAAAGCCGACAA
CAATGAGCTCTTTCTTGGCANTATTCAATTTCAGTAGGAATTGTTGGAAA
GCCGACAACAATGAGCTCTTTCTTGGCATTTGTGATAACCCGTCTTGAGC
GGCTAATTCAGGGAAACATCTCTGGGGACCGGTAGCCTACTCTATTGTGC
TTTGTAATAAACTCTTAGAGAACGACATATTAAAATTTTGACTTATAAGG
TGTCATCGTGATAACTTACCATGAATATTTTTAGACTGACTTTTAACCTA
AAAAATCTCTTTGGGATACTTTATTCTGTATGTTAGGGTATAACACTTTA
TAGAAGCATGTTTCTTCTCATTTATTTAATGTTTTAGAAAATAGTACTCC
TACAATACAATGACAAACTCTTTCTTTGATGTTTTTTAAACCCAACCATA
TAGAATTCTCTCAAATATCTAAACCAGATTTGCCTCATATTTCACTTATA
TCAAAATAACTCTGTTGTGGAGCAATCTTTCAAAATTCAATTGCTGAGTT
GATTTCGTTTTATCCTTTCGATTATTAAAAAGAAAACATAAACTGTTGTT
GCAAGTTGTTACTATGTTTTTTCTCTATGTCTCAAAGTGCTTAAAATGTT
TTCAAAAAGTTTAATTTACTCTCAATTTACCCTACTATCACCGTATTCAA
AGTAGTAATACGCATGAATATAATACAAATAGCCGAGATAAAAACCCGAT
ACGTTGTTTTTTTATGTGACAGTGAACCACAAGTAGATATTTGGCAAGAA
GTACCCTCTCTCTGAGGCAACTTTACCCCACACTCACAAATCCAGACACT
TATATATTCTTTGACAGAGGATATGTATGTTCTGGTACGCCGGAATTTCG
TTAATGATATAGCGTACCTCGGCATTCACAGAGAAAAGCCTTCTCGCGCT
ACCATTTTGCCTCCTTTCGCGCCTCCAAAACAAAGGCAAAATGAATCCAC
TCTGCTAGTGATTGCGCAACTTCTTTTTTCCCCCTTTTTACTTCTTTTCC
CCCGTTGAGGGTGGCGAGCGTGCATTTTTTCTAGTGTAGTGGTTATCAAC
CTTGATTCCCGTCTGAGAGGTCAGGGTTCGATTCTCACTCGGTGCTATGA
TTCACTTGGCAAGTGAATGTACCTTCGCCCGGATCAACCCATGCCTTGTG
AGGGGAACTGGGTACCACTATTCTGAAATAAATACTTGAAGAAATATAAG
AATATTCTGTTCACTCTAACAATTTGACTTTTGAAGAAATATTTCTCATA
TAATGGCATGATGATAATTCTTGTCTTAATTCGTGTTTTTCTTTCCTTTT
TCCTTTACAGAGGAAGATGCACGAAGCTTTATTAGAAAAAGTACCCATGC
TGAAACATTTGAACGTAAGTATTCAATTCACATTTCCTTTTACGCGAGAC
TAGAGTGCATAATTCCGAAAGACTCGATTATTTGCCTTATTGATACCCTC
CATTTGCTAGGTATAATGAATTATAAATTATACATAAAGATTAAGAAACG
TTGTATTTGTTGTATAATGAATTATACATATAATGAATTATCTTGTCAAA
ATAAAACCAATTTTCTTCGTCTATGAAGAGTGTATACATAATAACTGATC
AAAAACAACACGTCTTTTTTGCATGAATATTTCGGCCAAAAGGCCTTTCT
CAACATAAAAATGAATGAAGGTTTTTAAACATATCGCTATATACACCAGG
GAAAACATAAAAGGCCTATTGACAGTTTAAAAAGTGATTAAGTAATAAAA
AGTAAGAAAATTATTAAAATGACGTTTGTAATGTACAATTAAGGTTAAAA
GAATGAATTATACATATATAATGAATTTCTAATCTGGTGAAAGTGTAATT
AATCAGTTAATTTCTCCTCATAATTTTCTCGATTTCATAGATTTCGCGTA
GAACTAACACTTCCTATAAAGCGGAGATTAGTTTCAGCTTTGTGCGAAAG
AACCACTTAATTTTATAAATCCCCTTGAACTAATCTCTACCCGCCACCTT
TGTTTGGAGTTTTTTCTTAAAATTAGTGTTGATGGCAGAAAAGCCATCTT
TAATGAACTTGATGATTGAGTTTTAATTATGTTTAATTTGTAATCCCGGG
TGTATATAAGTTCTTTTGTTTAGTGTCTTTTCATTTCATTGCGTCTCATG
AGGCTTCTTTGTTTTGCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNAAAGAGGACTTCTCCAGAAGAAAAAATGCTCGAGAATGCTACT
CAACTGGCTAGTCTAGAAGTTGAACTTGCCTTTGCTGAGAGGGAGGGTGT
TAGTGAAAAGGATCGTTTGCTCCTTGACTTTTGGAAATTCTAACTTCGAG
ATTAAGGCTGAGTCTACAAGAAAAAGTATTCATCCTATTTCTTCTGAGCA
AATTTCTAGGCCAGAGTCTGTATCTAGCCATGGTAGTGTCAATTTTTTGC
CAGCTCCACCTTCTGAACCTAGAACACGAAGTGTGAGAAGAGTTTCTAAG
TTTCAAACGACCGTTGATACTCCTGATATTTCGAATGCTCTTTTTGATCT
TGTTAAAATGCAAGGTGCTCCTGCGGTTAAACTTGAGGTTTTCAAGGGTG
ATCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATTGAAGG
AAAAGCTTTGTTTCGGATGTCTTGAAAAAGGTCATCTTGCTTCAAGTTGT
AAAAATCGAAGAACTTGTCTGGTTTGTAATAAAAAGCATCCAACTATTAC
TCATGGAATGAGATTTCGTCATCCTCCACGTCTACCTCCTAAAGACTCGA
AGAAAGACAGCTCTGAATCTAAAGAACCTGATGTCAGACCTTGTCCTAAA
AAGCCTGAAGTTTCAAATCCACCTGTTAGTTGTATTTTGAATAAGGATTC
TGAAAAAAAACATTAGTATGTGTGTTGTTCCAGTTATATTACGTCATGAA
TTGTCTAAATCTGACATTGTTACATTTGCTGTGCTTGACAATTGTTCANT
TATTAAGCTTATACTTCAGTACAGCTTATGCAGAAATTTGGGAGAAATTG
ACTCATTTTTCATAAGGTTATGGCCCGTTGCAGGTGTTAGTCGTTTACCA
TTTCCCTTGTTTTGTGCTTGACCGGTGCCCGCCCGACAACTGTGGTTTTT
GTAAAATGGAGTATAGACACATATTCATTCAGAAAAAACCTTTACTAAGA
CTCAATCAAGCATACTTTAATGTAACTTCTGCAGAAACTTTGTAAATATT
GGTATATTTTTCATAAAGGCATTGCCAAAATGATAAATCACTGGAGTTGG
TCGATTTTCTTGCTTAAGCCGGCTGTCTACTGCGCTGTCACTTTGACTCT
TTACTATAATATAATTAAAAACAATTGTGGGTAAAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036543	XLOC_036543	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00057985-exon-scaffold_302-1575043694:329452..329523	TCONS_00057985-exon-scaffold_302-1575043694:329452..329523	Clytia hemisphaerica	exon
TCONS_00057985-exon-scaffold_302-1575043694:323587..323803	TCONS_00057985-exon-scaffold_302-1575043694:323587..323803	Clytia hemisphaerica	exon
TCONS_00057985-exon-scaffold_302-1510915933:329452..329523	TCONS_00057985-exon-scaffold_302-1510915933:329452..329523	Clytia hemisphaerica	exon
TCONS_00057985-exon-scaffold_302-1510915933:323587..323803	TCONS_00057985-exon-scaffold_302-1510915933:323587..323803	Clytia hemisphaerica	exon
TCONS_00057985-exon-scaffold_302-1491911889:329452..329523	TCONS_00057985-exon-scaffold_302-1491911889:329452..329523	Clytia hemisphaerica	exon
TCONS_00057985-exon-scaffold_302-1491911889:323587..323803	TCONS_00057985-exon-scaffold_302-1491911889:323587..323803	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_302	supercontig	scaffold_302:323587..329523 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.41668	4.38062	4.7224	5.5304	197.405	84.3307	44.3778	56.1679	7.88277	18.9485	9.29338	10.8513	4.28295	7.86212	3.19316	3.30371	8.01554	3.00135	4.17663	0	1.95409	4.05019	4.15967	2.4949	6.90153	13.7456	0.439787	0.896184	2.15429	2.05116

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00057985 vs. Swiss-Prot (Human)

BLAST of TCONS_00057985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00057985 (transcript) - C. hemisphaerica