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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057988 ID=TCONS_00057988|Name=TCONS_00057988|organism=Clytia hemisphaerica|type=transcript|length=2209bpRun BLAST on NCBI protein sequence of TCONS_00057988-protein >TCONS_00057988-protein ID=TCONS_00057988-protein|Name=TCONS_00057988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=736bp FLDGVEEIHQSQMVQDILQTGAICCLVCIETVKRLNAIWSCTKCFSIFHLRun BLAST on NCBI transcript from alignment at scaffold_302:408389..441185- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057988 ID=TCONS_00057988|Name=TCONS_00057988|organism=Clytia hemisphaerica|type=transcript|length=32797bp|location=Sequence derived from alignment at scaffold_302:408389..441185- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_302:408389..441185- >TCONS_00057988 ID=TCONS_00057988|Name=TCONS_00057988|organism=Clytia hemisphaerica|type=CDS|length=46368bp|location=Sequence derived from alignment at scaffold_302:408389..441185- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057988 vs. Swiss-Prot (Human)
Match: NFXL1 (NF-X1-type zinc finger protein NFXL1 OS=Homo sapiens GN=NFXL1 PE=1 SV=2) HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0 Identity = 368/726 (50.69%), Postives = 464/726 (63.91%), Query Frame = 1
Query: 7 DGVEEIHQSQMVQDILQTGAICCLVCIETVKRLNAIWSCTKCFSIFHLQCIQKWAREGIGRQAIQAEGDLRDVKFMWNCPKCRHEYSQNENPTKYMCYCGKEEDPPFDPWIVPHSCGNKCERLLQPECGHECLLLCHPGACPPCPKTIKSKCYCGKSSPVLKRCSQKFWSCGNVCGQKLPCGQHVCEQVCHSGECPPCPKTSEKKCMCGKKKAIRKCAENVWSCQQACNKALSCDHHVCEKECHSEDCGDCPRGGNRFCPCGKTEIQLPCTEDVNTCVDTCMKPLNCQLHKCSKKCHFGSCESCLQVVEKSCRCGKKKKLVPCSQPLSCESKCTKTRNCGRHPCKKKCCNGSCPPCEQVCNRNLNCRNHKCPSPCHQGLCYPCPESKKVTCFCGSNSITTPCGKEKSVKPPRCKKQCTIPSDCHHEKRENHRCHFGRCPPCKKACGKVFE-CGHSCPDLCHDQVRDKDAENRNLLRGINGKRGNKEIYVALPCQPCRAPVKKLCLGEHDFREFPCSEVVEYACQTPCGRRLACGNHTCTKKCHLVK---GKPEQGKAGSNCEKCKEMCRKERPTGCVHDCKLPCHPGDCPPCETHLKMFCHCKALQVYLKCWEFHEGDEKRQEEMLCCTVRCQRIISCGHACSKICHEGPCSLANECQEXXXXXXXXXXXXXDLPCIEVDED-TQIDCDDKCKEIKAKKNMSKQQEEKERRDAELRAQQEELEKFE 2169
D E Q V + Q GA+ CL+CI +VKR A+WSC+ CF IFH+ CIQKWA++ + + D W CPKCR EY ++E P++Y CYCGK EDPP DPW+VPHSCG CER +P CGH+CLLLCHPG CPPCPK + + CYC K+ P+ +RCS K WSC CGQKL CGQH CE CH+G C PCP+ S +KC+CGKK A R CA +W C Q C K L C +H CE+ CH CG+CPR G RFCPC K++ LPCTEDV TC D+C K L C +H+CS++CH G CE+C Q VEK CRCGK K +PC +P CE+KC K R+C +H C++KCC G+CPPC+Q C R L CRNHKCPS CH+G CYPCPE+ V C CG+ +T PCG+E++ +PP+CK+QC+ P CHH +E HRCHFG CPPC + C KV E CGH CP CHDQ K I ALPC PC+ P+ CLG+H+ PC V Y+C+ CGR L C NHTC K+CH V G + KAG C C+E C K RP GC+H C L CHPG+CPPC L++ CHCK +Y++C + D + + CC +C + + CGH C ++CH G C C +K K++C C R KK+L C +V E+ I+CD CKE+K K + K+ E K + E R QQ ELE FE
Sbjct: 138 DTRELERTKQYVNEAFQAGAMTCLICIASVKRNQAVWSCSGCFCIFHMPCIQKWAKDSQFLVSSVTDDDFGKKDCPWPCPKCRFEYKRSETPSRYYCYCGKVEDPPLDPWLVPHSCGQVCEREFKPPCGHKCLLLCHPGPCPPCPKMVTTTCYCKKAKPIPRRCSAKEWSCQLPCGQKLLCGQHKCENPCHAGSCQPCPRVSRQKCVCGKKVAERSCASPLWHCDQVCGKTLPCGNHTCEQVCHVGACGECPRSGKRFCPCQKSKFSLPCTEDVPTCGDSCDKVLECGIHRCSQRCHRGPCETCRQEVEKHCRCGKHTKRMPCHKPYLCETKCVKMRDCQKHQCRRKCCPGNCPPCDQNCGRTLGCRNHKCPSVCHRGSCYPCPETVDVKCNCGNTKVTVPCGRERTTRPPKCKEQCSRPPTCHHTSQEKHRCHFGSCPPCHQPCQKVLEKCGHLCPAPCHDQALIKQTGRHQPTGPWEQPSEPAFIQTALPCPPCQVPIPMECLGKHEVSPLPCHAVGPYSCKRVCGRILDCQNHTCMKECHKVTKTDGCTGKNKAGPECLHCEEGCSKSRPLGCLHPCILRCHPGECPPCVQMLRIKCHCKITSLYVECRKITTADVNEKNLLSCCKNQCPKELPCGHRCKEMCHPGECPF--NCNQKVKLRCPCKRIKKELQCNKVRENQVSIECDTTCKEMKRKASEIKEAEAKAALEEEKRRQQAELEAFE 861 The following BLAST results are available for this feature:
BLAST of TCONS_00057988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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