TCONS_00058014 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058014
Unique NameTCONS_00058014
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length520

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058014 ID=TCONS_00058014|Name=TCONS_00058014|organism=Clytia hemisphaerica|type=transcript|length=520bp
CACGAAGGCACGtaaggcacgtagggcacgaaggcacgtcaaaaaaatga
gggcacgtgggcacgtagggcacgtcatttagcagactcgtgaATACAAT
GAGCTCCGAGATAATGGTTTTGTATTTGATAATAAGCAATATTATGTCAA
AATATGGTGCATGCTTTGTGATGCTCCTGCCAGACAGTTCATTAAATGCA
TAAAAGGGCATGGGGGATTCTATCCATGCGAACGATGCATGATTAAAGGT
GAAAGAATTGATGGTAGAACAGTTTTTCTTGCAACCAACATGGACTTGAG
AACTgaagaagattttgaaaattttaaatatgaaGGTAAGCATCAGCATC
AACTCAGTCCGTTGGTTGAAGCAAGATCAGGATTGAAGTGTTTAGAAGGA
TTCCCCCTTGACTACATGCATCTTATTTGTCTGGGTGTTATGAAAcgaat
tttacaatttttaaaagaaggACCACGTCTTTGTAGACTATCTCAAAGGC
AAATTAGACAAGTCTCNTTA
Run BLAST on NCBI

protein sequence of TCONS_00058014-protein

>TCONS_00058014-protein ID=TCONS_00058014-protein|Name=TCONS_00058014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MLCDAPARQFIKCIKGHGGFYPCERCMIKGERIDGRTVFLATNMDLRTEE
DFENFKYEGKHQHQLSPLVEARSGLKCLEGFPLDYMHLICLGVMKRILQF
LKEGPRLCRLSQRQIRQVXL
Run BLAST on NCBI

transcript from alignment at scaffold_303:18707..19226

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058014 ID=TCONS_00058014|Name=TCONS_00058014|organism=Clytia hemisphaerica|type=transcript|length=520bp|location=Sequence derived from alignment at scaffold_303:18707..19226 (Clytia hemisphaerica)
TAANGAGACTTGTCTAATTTGCCTTTGAGATAGTCTACAAAGACGTGGTc
cttcttttaaaaattgtaaaattcgTTTCATAACACCCAGACAAATAAGA
TGCATGTAGTCAAGGGGGAATCCTTCTAAACACTTCAATCCTGATCTTGC
TTCAACCAACGGACTGAGTTGATGCTGATGCTTACCttcatatttaaaat
tttcaaaatcttcttcAGTTCTCAAGTCCATGTTGGTTGCAAGAAAAACT
GTTCTACCATCAATTCTTTCACCTTTAATCATGCATCGTTCGCATGGATA
GAATCCCCCATGCCCTTTTATGCATTTAATGAACTGTCTGGCAGGAGCAT
CACAAAGCATGCACCATATTTTGACATAATATTGCTTATTATCAAATACA
AAACCATTATCTCGGAGCTCATTGTATtcacgagtctgctaaatgacgtg
ccctacgtgcccacgtgccctcatttttttgacgtgccttcgtgccctac
gtgccttaCGTGCCTTCGTG

Coding sequence (CDS) from alignment at scaffold_303:18707..19226

>TCONS_00058014 ID=TCONS_00058014|Name=TCONS_00058014|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_303:18707..19226 (Clytia hemisphaerica)
TAANGAGACTTGTCTAATTTGCCTTTGAGATAGTCTACAAAGACGTGGTc
cttcttttaaaaattgtaaaattcgTTTCATAACACCCAGACAAATAAGA
TGCATGTAGTCAAGGGGGAATCCTTCTAAACACTTCAATCCTGATCTTGC
TTCAACCAACGGACTGAGTTGATGCTGATGCTTACCttcatatttaaaat
tttcaaaatcttcttcAGTTCTCAAGTCCATGTTGGTTGCAAGAAAAACT
GTTCTACCATCAATTCTTTCACCTTTAATCATGCATCGTTCGCATGGATA
GAATCCCCCATGCCCTTTTATGCATTTAATGAACTGTCTGGCAGGAGCAT
CACAAAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036570XLOC_036570Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058014-exon-scaffold_303-1491911889:18707..19226TCONS_00058014-exon-scaffold_303-1491911889:18707..19226Clytia hemisphaericaexon
TCONS_00058014-exon-scaffold_303-1510915933:18707..19226TCONS_00058014-exon-scaffold_303-1510915933:18707..19226Clytia hemisphaericaexon
TCONS_00058014-exon-scaffold_303-1575043694:18707..19226TCONS_00058014-exon-scaffold_303-1575043694:18707..19226Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058014-proteinTCONS_00058014-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_303supercontigscaffold_303:18707..19226 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.243429	0.243012	0.275392	0.530825	15.9184	13.2506	5.42654	6.43036	2.49938	1.78609	2.58436	2.66685	0.782225	2.2643	0.712539	1.27527	2.38401	2.49721	2.30405	2.53792	1.43384	1.29116	1.30798	1.6648	2.7392	2.05439	2.22015	1.00162	1.15554	0.645008
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top