TCONS_00058110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058110
Unique NameTCONS_00058110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length879

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058110 ID=TCONS_00058110|Name=TCONS_00058110|organism=Clytia hemisphaerica|type=transcript|length=879bp
CAGGAGTAATATTTATCTTTCATTATTGAACCTTTGTCAGATTGTTTTGA
GAATCAAAAATGTAGTTATAATATGATAATGAAAACAGGTTCAGAACTAT
AACAATATTTTACATATATGAACCAAACACTAAACCAGTTAATCAATAGT
AAATGAATTACATCAAACTGTCTCCCTCAAATAACTGACTGGTACTTTTT
AAACGAGAATGTGGAAAGTAACACCCAATTCACGGTCTAGTATATACAGT
CAACAGTTATTTACAGTTAATTACAAAAAACTGATCAATATATAAATTCA
CAATTTTTCAATTAGCTATTAAACAACTATATTGATTCTAATTGATCGAT
CGAATGTCATCGATGAAACAGCCATAGTTGATAACCAATTTTATCGAATT
TCAACCATCTGGAAGgtattgatttattgattatGGATTAAAAGCAATCA
ATATGCACAATAATTAATTTATCAATAGTCAATCAAAGACTTGTGTTTGC
CAGTCTTCCATTATATTCTCGATTATAGCTTATGTTTGAGTGATCCAACA
AGATAAAATTCTTCCTAATCCCTAGCCAGGATGAGGATCGGGCTCCAACT
ATATATATTTAATGACAAATGATGGCGAGAAAGCCAGGTTACACCTACAC
ACCCTTTTTCCCATAATGTTATGATATGAAGCGACACATAATTTCCTCTT
TTTCCCATCTATAAGAATGTGTGACGAATTAAAACACGGGTGCCAACATT
AGACCATCCTTACGATACCactacttttaaaaatatttagatttattttt
taGTTTATATCTGGGAAAATGTATATACAGTATGTATTATACCCTTTGGA
TAAATTTATAGAAAATAGatgaatttttt
Run BLAST on NCBI

transcript from alignment at scaffold_305:232461..233339

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058110 ID=TCONS_00058110|Name=TCONS_00058110|organism=Clytia hemisphaerica|type=transcript|length=879bp|location=Sequence derived from alignment at scaffold_305:232461..233339 (Clytia hemisphaerica)
aaaaaattcatCTATTTTCTATAAATTTATCCAAAGGGTATAATACATAC TGTATATACATTTTCCCAGATATAAACtaaaaaataaatctaaatatttt taaaagtagtGGTATCGTAAGGATGGTCTAATGTTGGCACCCGTGTTTTA ATTCGTCACACATTCTTATAGATGGGAAAAAGAGGAAATTATGTGTCGCT TCATATCATAACATTATGGGAAAAAGGGTGTGTAGGTGTAACCTGGCTTT CTCGCCATCATTTGTCATTAAATATATATAGTTGGAGCCCGATCCTCATC CTGGCTAGGGATTAGGAAGAATTTTATCTTGTTGGATCACTCAAACATAA GCTATAATCGAGAATATAATGGAAGACTGGCAAACACAAGTCTTTGATTG ACTATTGATAAATTAATTATTGTGCATATTGATTGCTTTTAATCCataat caataaatcaatacCTTCCAGATGGTTGAAATTCGATAAAATTGGTTATC AACTATGGCTGTTTCATCGATGACATTCGATCGATCAATTAGAATCAATA TAGTTGTTTAATAGCTAATTGAAAAATTGTGAATTTATATATTGATCAGT TTTTTGTAATTAACTGTAAATAACTGTTGACTGTATATACTAGACCGTGA ATTGGGTGTTACTTTCCACATTCTCGTTTAAAAAGTACCAGTCAGTTATT TGAGGGAGACAGTTTGATGTAATTCATTTACTATTGATTAACTGGTTTAG TGTTTGGTTCATATATGTAAAATATTGTTATAGTTCTGAACCTGTTTTCA TTATCATATTATAACTACATTTTTGATTCTCAAAACAATCTGACAAAGGT TCAATAATGAAAGATAAATATTACTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036623XLOC_036623Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058110-exon-scaffold_305-1491911889:232461..233339TCONS_00058110-exon-scaffold_305-1491911889:232461..233339Clytia hemisphaericaexon
TCONS_00058110-exon-scaffold_305-1510915933:232461..233339TCONS_00058110-exon-scaffold_305-1510915933:232461..233339Clytia hemisphaericaexon
TCONS_00058110-exon-scaffold_305-1575043694:232461..233339TCONS_00058110-exon-scaffold_305-1575043694:232461..233339Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_305supercontigscaffold_305:232461..233339 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (5.08978 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.158856 0.206546 0.299774 0.469251 0.142817 0.169284 0.748858 1.14721 0.758566 0.718522 1.0193 0.423188 1.23258 1.31662 1.50339 1.90377 1.94779 2.68905 2.42043 1.82597 4.35173 3.59597 1.63927 2.0975 0 0 3.77559 2.63462 3.35003 5.08978
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800Sequence
Match NameE-valueIdentityDescription
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