TCONS_00058078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058078
Unique NameTCONS_00058078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058078 ID=TCONS_00058078|Name=TCONS_00058078|organism=Clytia hemisphaerica|type=transcript|length=1733bp
TGATTGCAAGGCTTTTGAGACAACAGTCTCTAAAACAGaacaaacaaaac
attttaaaattttctttgttgcaTTAACATATGTAATGGCAAGTACCAAG
TTGTTTACTCTTCCCCAGAGGCCATCCTTTCGAGAAATCGTGgtcttttg
aaaaatcaacaatTCAAAACCAACACAATCGCAGTTTATATTGATGAAAG
TCATTGTATCAAAAAGTGGGGAAGCAAATCCAAAGAAGCTGCCGCATTTC
GACATTGGTATGGTAAGCTGGGTGAGATAAGGTCAATGATAGATGTACCC
TTCATTGCCATGACAGCAACAGCAACCATGGAGATGAAGAAATTCATCAT
TTGTAATCTCGACCTGACTGAACCTTTGCTGCTTGTACAATCCCCTGAAA
AACCAAACATAAAATACAACCTTATTGAATTACCTCACAAAAACATCGAA
TTCATCTTTATGCCACTAGTTAACtatctcaaagaaaaattttacgACGC
TGACAAATTCATAATCTTTTGTAGAACCATTGACGATACCAGGCCAATAT
ATCAACTTTTTAGGCAGCACATCAAAGTAAAAAACCCCACCCTTCGTCCA
TATGCAAAGTTTCATGCCAAAACCGAGGGtgatttaaaaagatttttatc
aaaGGAATTCACTGATCCTAAGAGTAGAATCCGGATCCTGATGGCAACAA
TGGCCTATGGTATGGGAGTCGACTGCAAAGGACTCTATGACGTCATACAT
TTTGGTCCTCCCAAAGATCTCGACGACTATTTTCAAGAGTCTGGAAGGGC
TGGCCGTGATGGATGTCTGAGCAATTCCACCGTGATTAAATACAAAAGGG
CGCTCAATCCATCTTGTTTGTCCCCTGAGATAAAACAATATTGCAATAAT
CAGTCTGATTGTAggagaaaacttttgttgtcaCAATTTCAAGAAACCCC
ATATTTCCCTTCTATCACTCCAAAACACCAGTGTTGTGACATATGTCATC
GTCAATGTGATTGTGGCACCTGTGTGAATGAGCATGAACACCCTTGGTAC
ATTAGAGAGATCACAGATTCTATTCAAAAGTTAAGAATTAAATGCTCTCT
TAATGAAAACGGCAAATCGGTTCTCAAAGAAAAGTTGGTTGCCTTTCAAT
CACAAATCACTTCTGTGTCAAAAGGTGGTCTTTTAAATGGCAAGTTTTCT
TCTGGCTTCCCAGATCAGTCAATCGAGGAAATTATCAATATCGCAAGTGA
GTTGACTACCAGTGAAATGTTAATAGAACACACTTCTTTGACAAATAACA
AATTCTTCGAGGAAATTATTTCGCAAATTCAAGAAGTTCTTACCTTACCT
GACTGTAAACTTGACAACATTGAAGAGCTTGAGTACTTTAGTGATAATAA
TGACTTGAGTGTTGAATCTGAGAATGAGCTTAATCATGATGCTTCTGCTG
ATGAGATTGTTAATGATAGTGGTTCTGATTTTAGTGATGACATCTGACAA
GTTTCCATTATGTTTTTTGTTATATTCttactaaaaaataaaaatgatat
ttcaattttattttactcAAAGATATCTGTACAGTGTGTCCCAGAAAGAA
TTACCCTCTTCAACACtgagaaaaaatataatttttttttataaaaactg
acATTTTCTCTCTTATTCTCTCTCTCAGAGTTCAGATAAAAACTGATTAC
TGGAATCTTTATATTTTTAGTACCACAAGCATT
Run BLAST on NCBI

protein sequence of TCONS_00058078-protein

>TCONS_00058078-protein ID=TCONS_00058078-protein|Name=TCONS_00058078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MIDVPFIAMTATATMEMKKFIICNLDLTEPLLLVQSPEKPNIKYNLIELP
HKNIEFIFMPLVNYLKEKFYDADKFIIFCRTIDDTRPIYQLFRQHIKVKN
PTLRPYAKFHAKTEGDLKRFLSKEFTDPKSRIRILMATMAYGMGVDCKGL
YDVIHFGPPKDLDDYFQESGRAGRDGCLSNSTVIKYKRALNPSCLSPEIK
QYCNNQSDCRRKLLLSQFQETPYFPSITPKHQCCDICHRQCDCGTCVNEH
EHPWYIREITDSIQKLRIKCSLNENGKSVLKEKLVAFQSQITSVSKGGLL
NGKFSSGFPDQSIEEIINIASELTTSEMLIEHTSLTNNKFFEEIISQIQE
VLTLPDCKLDNIEELEYFSDNNDLSVESENELNHDASADEIVNDSGSDFS
DDI
Run BLAST on NCBI

transcript from alignment at scaffold_305:235897..238382+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058078 ID=TCONS_00058078|Name=TCONS_00058078|organism=Clytia hemisphaerica|type=transcript|length=2486bp|location=Sequence derived from alignment at scaffold_305:235897..238382+ (Clytia hemisphaerica)
TGATTGCAAGGCTTTTGAGACAACAGTCTCTAAAACAGaacaaacaaaac
attttaaaattttctttgttgcaTTGTAAGTTTTTCAAgacatttcattg
cttttattCATGAGGAagacattacattacattataATTTTAGTTAATTT
TTTGACATTGACAGTTCATAGTTTGTGTTGGTTCTATTATATACACATCT
GAGACGAATCTTCATTTTGTTGATTTAGTAGTGAAGTCTTACAGAAATTG
ATATTgatagtttgttttgattttcatttcagatagaaaaatataaagat
tttatccTTTTCTTGGTCTCATAttcttatttcttttaaatcaaaaattg
aaaaaatatctcaGATTTGTGTTATTTGGGTCCCAAcagaccaaaaaaaa
ttatgcaaacttaattttgaaaaaaaaaatctctataGCCCACTACTACT
TgaatggaaatattttttgtaaatggAAGTATTAACGAGACAACAGTTCT
CTTCAGTAGCTTTACAATAAATCGTAAAAAGTTTGAGTTGTGATAGAAAT
TTTGTACTGTTTATTTAGAACATATGTAATGGCAAGTACCAAGTTGTTTA
CTCTTCCCCAGAGGCCATCCTTTCGAGAAATCGTGgtcttttgaaaaatc
aacaatTCAAAACCAACACAATCGCAGTTTATATTGATGAAAGTCATTGT
ATCAAAAAGTGGTATGTAGTAAGAAattcatttttgttgttttctttgag
TAGTGTGTTTTCAGATATTTAAGAAATATTGTCAGCTTATGATTATGAGT
TTTGGCCAACATTCCATTAGATAAACTTTAGTGTGAgtctatgttttttt
ttgtcatcgaTATATTTTgggtggtttttcgaagttttcaAATGCTGTAT
TTAACTGATTTACTGAGGTAAGATAGAACCCGGAAGTTTTATCTAGgctt
ttcaaattgttttttaaccAGGGGAAGCAAATCCAAAGAAGCTGCCGCAT
TTCGACATTGGTATGGTAAGCTGGGTGAGATAAGGTCAATGATAGATGTA
CCCTTCATTGCCATGACAGCAACAGCAACCATGGAGATGAAGAAATTCAT
CATTTGTAATCTCGACCTGACTGAACCTTTGCTGCTTGTACAATCCCCTG
AAAAACCAAACATAAAATACAACCTTATTGAATTACCTCACAAAAACATC
GAATTCATCTTTATGCCACTAGTTAACtatctcaaagaaaaattttacgA
CGCTGACAAATTCATAATCTTTTGTAGAACCATTGACGATACCAGGCCAA
TATATCAACTTTTTAGGCAGCACATCAAAGTAAAAAACCCCACCCTTCGT
CCATATGCAAAGTTTCATGCCAAAACCGAGGGtgatttaaaaagattttt
atcaaaGGAATTCACTGATCCTAAGAGTAGAATCCGGATCCTGATGGCAA
CAATGGCCTATGGTATGGGAGTCGACTGCAAAGGACTCTATGACGTCATA
CATTTTGGTCCTCCCAAAGATCTCGACGACTATTTTCAAGAGTCTGGAAG
GGCTGGCCGTGATGGATGTCTGAGCAATTCCACCGTGATTAAATACAAAA
GGGCGCTCAATCCATCTTGTTTGTCCCCTGAGATAAAACAATATTGCAAT
AATCAGTCTGATTGTAggagaaaacttttgttgtcaCAATTTCAAGAAAC
CCCATATTTCCCTTCTATCACTCCAAAACACCAGTGTTGTGACATATGTC
ATCGTCAATGTGATTGTGGCACCTGTGTGAATGAGCATGAACACCCTTGG
TACATTAGAGAGATCACAGATTCTATTCAAAAGTTAAGAATTAAATGCTC
TCTTAATGAAAACGGCAAATCGGTTCTCAAAGAAAAGTTGGTTGCCTTTC
AATCACAAATCACTTCTGTGTCAAAAGGTGGTCTTTTAAATGGCAAGTTT
TCTTCTGGCTTCCCAGATCAGTCAATCGAGGAAATTATCAATATCGCAAG
TGAGTTGACTACCAGTGAAATGTTAATAGAACACACTTCTTTGACAAATA
ACAAATTCTTCGAGGAAATTATTTCGCAAATTCAAGAAGTTCTTACCTTA
CCTGACTGTAAACTTGACAACATTGAAGAGCTTGAGTACTTTAGTGATAA
TAATGACTTGAGTGTTGAATCTGAGAATGAGCTTAATCATGATGCTTCTG
CTGATGAGATTGTTAATGATAGTGGTTCTGATTTTAGTGATGACATCTGA
CAAGTTTCCATTATGTTTTTTGTTATATTCttactaaaaaataaaaatga
tatttcaattttattttactcAAAGATATCTGTACAGTGTGTCCCAGAAA
GAATTACCCTCTTCAACACtgagaaaaaatataatttttttttataaaaa
ctgacATTTTCTCTCTTATTCTCTCTCTCAGAGTTCAGATAAAAACTGAT
TACTGGAATCTTTATATTTTTAGTACCACAAGCATT

Coding sequence (CDS) from alignment at scaffold_305:235897..238382+

>TCONS_00058078 ID=TCONS_00058078|Name=TCONS_00058078|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_305:235897..238382+ (Clytia hemisphaerica)
ATGATAGATGTACCCTTCATTGCCATGACAGCAACAGCAACCATGGAGAT
GAAGAAATTCATCATTTGTAATCTCGACCTGACTGAACCTTTGCTGCTTG
TACAATCCCCTGAAAAACCAAACATAAAATACAACCTTATTGAATTACCT
CACAAAAACATCGAATTCATCTTTATGCCACTAGTTAACtatctcaaaga
aaaattttacgACGCTGACAAATTCATAATCTTTTGTAGAACCATTGACG
ATACCAGGCCAATATATCAACTTTTTAGGCAGCACATCAAAGTAAAAAAC
CCCACCCTTCGTCCATATGCAAAGTTTCATGCCAAAACCGAGGGtgattt
aaaaagatttttatcaaaGGAATTCACTGATCCTAAGAGTAGAATCCGGA
TCCTGATGGCAACAATGGCCTATGGTATGGGAGTCGACTGCAAAGGACTC
TATGACGTCATACATTTTGGTCCTCCCAAAGATCTCGACGACTATTTTCA
AGAGTCTGGAAGGGCTGGCCGTGATGGATGTCTGAGCAATTCCACCGTGA
TTAAATACAAAAGGGCGCTCAATCCATCTTGTTTGTCCCCTGAGATAAAA
CAATATTGCAATAATCAGTCTGATTGTAggagaaaacttttgttgtcaCA
ATTTCAAGAAACCCCATATTTCCCTTCTATCACTCCAAAACACCAGTGTT
GTGACATATGTCATCGTCAATGTGATTGTGGCACCTGTGTGAATGAGCAT
GAACACCCTTGGTACATTAGAGAGATCACAGATTCTATTCAAAAGTTAAG
AATTAAATGCTCTCTTAATGAAAACGGCAAATCGGTTCTCAAAGAAAAGT
TGGTTGCCTTTCAATCACAAATCACTTCTGTGTCAAAAGGTGGTCTTTTA
AATGGCAAGTTTTCTTCTGGCTTCCCAGATCAGTCAATCGAGGAAATTAT
CAATATCGCAAGTGAGTTGACTACCAGTGAAATGTTAATAGAACACACTT
CTTTGACAAATAACAAATTCTTCGAGGAAATTATTTCGCAAATTCAAGAA
GTTCTTACCTTACCTGACTGTAAACTTGACAACATTGAAGAGCTTGAGTA
CTTTAGTGATAATAATGACTTGAGTGTTGAATCTGAGAATGAGCTTAATC
ATGATGCTTCTGCTGATGAGATTGTTAATGATAGTGGTTCTGATTTTAGT
GATGACATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036600XLOC_036600Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058078-exon-scaffold_305-1491911889:235897..235971TCONS_00058078-exon-scaffold_305-1491911889:235897..235971Clytia hemisphaericaexon
TCONS_00058078-exon-scaffold_305-1510915933:235897..235971TCONS_00058078-exon-scaffold_305-1510915933:235897..235971Clytia hemisphaericaexon
TCONS_00058078-exon-scaffold_305-1575043694:235897..235971TCONS_00058078-exon-scaffold_305-1575043694:235897..235971Clytia hemisphaericaexon
TCONS_00058078-exon-scaffold_305-1491911889:236465..236607TCONS_00058078-exon-scaffold_305-1491911889:236465..236607Clytia hemisphaericaexon
TCONS_00058078-exon-scaffold_305-1510915933:236465..236607TCONS_00058078-exon-scaffold_305-1510915933:236465..236607Clytia hemisphaericaexon
TCONS_00058078-exon-scaffold_305-1575043694:236465..236607TCONS_00058078-exon-scaffold_305-1575043694:236465..236607Clytia hemisphaericaexon
TCONS_00058078-exon-scaffold_305-1491911889:236868..238382TCONS_00058078-exon-scaffold_305-1491911889:236868..238382Clytia hemisphaericaexon
TCONS_00058078-exon-scaffold_305-1510915933:236868..238382TCONS_00058078-exon-scaffold_305-1510915933:236868..238382Clytia hemisphaericaexon
TCONS_00058078-exon-scaffold_305-1575043694:236868..238382TCONS_00058078-exon-scaffold_305-1575043694:236868..238382Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058078-proteinTCONS_00058078-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_305supercontigscaffold_305:235897..238382 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.139676	0	0.210865	0.0293578	0.169903	0.272883	0.316773	0	0	0.170092	0.0707553	0	0.402542	0.675301	0.682518	0.423478	0.794828	0.676429	1.01461	0.317916	0.21192	0.399787	0.293608	0	0	0	0.223444	0	0.106931	0.214246
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR011991WHTH_DNA-bd_dom
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
Blast
[Close]
BLAST of TCONS_00058078 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.212e-31
Identity = 94/342 (27.49%), Postives = 167/342 (48.83%), Query Frame = 1 
Query:   88 GKYQVVYSSPEAILSRNRGLLKNQQFKTNTIAVYIDESHCIKKWGSKSKEAAAFRHWYGKLGEIRSMID-VPFIAMTATATMEMKKFIICNLDLTEPLLLVQSPEKPNIKYNLIELPHKNIEFIFMPLVNYLKEKFYDADKFIIFCRTIDDTRPIYQLFRQHIKVKNPTLRPYAKFHAKTEGDLKRFLSKEFTDPKSRIRILMATMAYGMGVDCKGLYDVIHFGPPKDLDDYFQESGRAGRDGCLSNSTVIKYKRALNPS-----------------CLSPEIKQYCNNQSDCRRKLLLSQFQETPYFPS---ITPKHQCCDICHRQCD-CGTCVNEHEHPW 1047
            GKY++VY +PE   S N GLL+  +       + +DE+HCI +WG        FR  + KLG +++ +  VP +A+TATA+  +++ I+  L+L  P +     ++PN+ Y  +     NI     P +      +      II+C     +R + Q     ++  N +   Y   HA      ++ +   F   +  I+ ++AT+A+GMG++   +  VIH+G PKD++ Y+QE GRAGRDG  S+  V+     +N +                  +  ++++Y ++ S CRR+++LS F++     +   I    +CCD C  + D C +  +  +  W
Sbjct:  634 GKYRIVYVTPE-YCSGNMGLLQQLEADIGITLIAVDEAHCISEWGHD------FRDSFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNL-YLEVRRKTGNILQDLQPFLVKTSSHWEFEGPTIIYC----PSRKMTQQVTGELRKLNLSCGTY---HAGMSFSTRKDIHHRFV--RDEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHS-SRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLDHCYSMDDSEDTSW 957
The following BLAST results are available for this feature:
BLAST of TCONS_00058078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN1.212e-3127.49Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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