Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058078 ID=TCONS_00058078|Name=TCONS_00058078|organism=Clytia hemisphaerica|type=transcript|length=1733bp TGATTGCAAGGCTTTTGAGACAACAGTCTCTAAAACAGaacaaacaaaac attttaaaattttctttgttgcaTTAACATATGTAATGGCAAGTACCAAG TTGTTTACTCTTCCCCAGAGGCCATCCTTTCGAGAAATCGTGgtcttttg aaaaatcaacaatTCAAAACCAACACAATCGCAGTTTATATTGATGAAAG TCATTGTATCAAAAAGTGGGGAAGCAAATCCAAAGAAGCTGCCGCATTTC GACATTGGTATGGTAAGCTGGGTGAGATAAGGTCAATGATAGATGTACCC TTCATTGCCATGACAGCAACAGCAACCATGGAGATGAAGAAATTCATCAT TTGTAATCTCGACCTGACTGAACCTTTGCTGCTTGTACAATCCCCTGAAA AACCAAACATAAAATACAACCTTATTGAATTACCTCACAAAAACATCGAA TTCATCTTTATGCCACTAGTTAACtatctcaaagaaaaattttacgACGC TGACAAATTCATAATCTTTTGTAGAACCATTGACGATACCAGGCCAATAT ATCAACTTTTTAGGCAGCACATCAAAGTAAAAAACCCCACCCTTCGTCCA TATGCAAAGTTTCATGCCAAAACCGAGGGtgatttaaaaagatttttatc aaaGGAATTCACTGATCCTAAGAGTAGAATCCGGATCCTGATGGCAACAA TGGCCTATGGTATGGGAGTCGACTGCAAAGGACTCTATGACGTCATACAT TTTGGTCCTCCCAAAGATCTCGACGACTATTTTCAAGAGTCTGGAAGGGC TGGCCGTGATGGATGTCTGAGCAATTCCACCGTGATTAAATACAAAAGGG CGCTCAATCCATCTTGTTTGTCCCCTGAGATAAAACAATATTGCAATAAT CAGTCTGATTGTAggagaaaacttttgttgtcaCAATTTCAAGAAACCCC ATATTTCCCTTCTATCACTCCAAAACACCAGTGTTGTGACATATGTCATC GTCAATGTGATTGTGGCACCTGTGTGAATGAGCATGAACACCCTTGGTAC ATTAGAGAGATCACAGATTCTATTCAAAAGTTAAGAATTAAATGCTCTCT TAATGAAAACGGCAAATCGGTTCTCAAAGAAAAGTTGGTTGCCTTTCAAT CACAAATCACTTCTGTGTCAAAAGGTGGTCTTTTAAATGGCAAGTTTTCT TCTGGCTTCCCAGATCAGTCAATCGAGGAAATTATCAATATCGCAAGTGA GTTGACTACCAGTGAAATGTTAATAGAACACACTTCTTTGACAAATAACA AATTCTTCGAGGAAATTATTTCGCAAATTCAAGAAGTTCTTACCTTACCT GACTGTAAACTTGACAACATTGAAGAGCTTGAGTACTTTAGTGATAATAA TGACTTGAGTGTTGAATCTGAGAATGAGCTTAATCATGATGCTTCTGCTG ATGAGATTGTTAATGATAGTGGTTCTGATTTTAGTGATGACATCTGACAA GTTTCCATTATGTTTTTTGTTATATTCttactaaaaaataaaaatgatat ttcaattttattttactcAAAGATATCTGTACAGTGTGTCCCAGAAAGAA TTACCCTCTTCAACACtgagaaaaaatataatttttttttataaaaactg acATTTTCTCTCTTATTCTCTCTCTCAGAGTTCAGATAAAAACTGATTAC TGGAATCTTTATATTTTTAGTACCACAAGCATT Run BLAST on NCBI protein sequence of TCONS_00058078-protein >TCONS_00058078-protein ID=TCONS_00058078-protein|Name=TCONS_00058078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MIDVPFIAMTATATMEMKKFIICNLDLTEPLLLVQSPEKPNIKYNLIELP HKNIEFIFMPLVNYLKEKFYDADKFIIFCRTIDDTRPIYQLFRQHIKVKN PTLRPYAKFHAKTEGDLKRFLSKEFTDPKSRIRILMATMAYGMGVDCKGL YDVIHFGPPKDLDDYFQESGRAGRDGCLSNSTVIKYKRALNPSCLSPEIK QYCNNQSDCRRKLLLSQFQETPYFPSITPKHQCCDICHRQCDCGTCVNEH EHPWYIREITDSIQKLRIKCSLNENGKSVLKEKLVAFQSQITSVSKGGLL NGKFSSGFPDQSIEEIINIASELTTSEMLIEHTSLTNNKFFEEIISQIQE VLTLPDCKLDNIEELEYFSDNNDLSVESENELNHDASADEIVNDSGSDFS DDI Run BLAST on NCBI transcript from alignment at scaffold_305:235897..238382+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058078 ID=TCONS_00058078|Name=TCONS_00058078|organism=Clytia hemisphaerica|type=transcript|length=2486bp|location=Sequence derived from alignment at scaffold_305:235897..238382+ (Clytia hemisphaerica) TGATTGCAAGGCTTTTGAGACAACAGTCTCTAAAACAGaacaaacaaaac
attttaaaattttctttgttgcaTTGTAAGTTTTTCAAgacatttcattg
cttttattCATGAGGAagacattacattacattataATTTTAGTTAATTT
TTTGACATTGACAGTTCATAGTTTGTGTTGGTTCTATTATATACACATCT
GAGACGAATCTTCATTTTGTTGATTTAGTAGTGAAGTCTTACAGAAATTG
ATATTgatagtttgttttgattttcatttcagatagaaaaatataaagat
tttatccTTTTCTTGGTCTCATAttcttatttcttttaaatcaaaaattg
aaaaaatatctcaGATTTGTGTTATTTGGGTCCCAAcagaccaaaaaaaa
ttatgcaaacttaattttgaaaaaaaaaatctctataGCCCACTACTACT
TgaatggaaatattttttgtaaatggAAGTATTAACGAGACAACAGTTCT
CTTCAGTAGCTTTACAATAAATCGTAAAAAGTTTGAGTTGTGATAGAAAT
TTTGTACTGTTTATTTAGAACATATGTAATGGCAAGTACCAAGTTGTTTA
CTCTTCCCCAGAGGCCATCCTTTCGAGAAATCGTGgtcttttgaaaaatc
aacaatTCAAAACCAACACAATCGCAGTTTATATTGATGAAAGTCATTGT
ATCAAAAAGTGGTATGTAGTAAGAAattcatttttgttgttttctttgag
TAGTGTGTTTTCAGATATTTAAGAAATATTGTCAGCTTATGATTATGAGT
TTTGGCCAACATTCCATTAGATAAACTTTAGTGTGAgtctatgttttttt
ttgtcatcgaTATATTTTgggtggtttttcgaagttttcaAATGCTGTAT
TTAACTGATTTACTGAGGTAAGATAGAACCCGGAAGTTTTATCTAGgctt
ttcaaattgttttttaaccAGGGGAAGCAAATCCAAAGAAGCTGCCGCAT
TTCGACATTGGTATGGTAAGCTGGGTGAGATAAGGTCAATGATAGATGTA
CCCTTCATTGCCATGACAGCAACAGCAACCATGGAGATGAAGAAATTCAT
CATTTGTAATCTCGACCTGACTGAACCTTTGCTGCTTGTACAATCCCCTG
AAAAACCAAACATAAAATACAACCTTATTGAATTACCTCACAAAAACATC
GAATTCATCTTTATGCCACTAGTTAACtatctcaaagaaaaattttacgA
CGCTGACAAATTCATAATCTTTTGTAGAACCATTGACGATACCAGGCCAA
TATATCAACTTTTTAGGCAGCACATCAAAGTAAAAAACCCCACCCTTCGT
CCATATGCAAAGTTTCATGCCAAAACCGAGGGtgatttaaaaagattttt
atcaaaGGAATTCACTGATCCTAAGAGTAGAATCCGGATCCTGATGGCAA
CAATGGCCTATGGTATGGGAGTCGACTGCAAAGGACTCTATGACGTCATA
CATTTTGGTCCTCCCAAAGATCTCGACGACTATTTTCAAGAGTCTGGAAG
GGCTGGCCGTGATGGATGTCTGAGCAATTCCACCGTGATTAAATACAAAA
GGGCGCTCAATCCATCTTGTTTGTCCCCTGAGATAAAACAATATTGCAAT
AATCAGTCTGATTGTAggagaaaacttttgttgtcaCAATTTCAAGAAAC
CCCATATTTCCCTTCTATCACTCCAAAACACCAGTGTTGTGACATATGTC
ATCGTCAATGTGATTGTGGCACCTGTGTGAATGAGCATGAACACCCTTGG
TACATTAGAGAGATCACAGATTCTATTCAAAAGTTAAGAATTAAATGCTC
TCTTAATGAAAACGGCAAATCGGTTCTCAAAGAAAAGTTGGTTGCCTTTC
AATCACAAATCACTTCTGTGTCAAAAGGTGGTCTTTTAAATGGCAAGTTT
TCTTCTGGCTTCCCAGATCAGTCAATCGAGGAAATTATCAATATCGCAAG
TGAGTTGACTACCAGTGAAATGTTAATAGAACACACTTCTTTGACAAATA
ACAAATTCTTCGAGGAAATTATTTCGCAAATTCAAGAAGTTCTTACCTTA
CCTGACTGTAAACTTGACAACATTGAAGAGCTTGAGTACTTTAGTGATAA
TAATGACTTGAGTGTTGAATCTGAGAATGAGCTTAATCATGATGCTTCTG
CTGATGAGATTGTTAATGATAGTGGTTCTGATTTTAGTGATGACATCTGA
CAAGTTTCCATTATGTTTTTTGTTATATTCttactaaaaaataaaaatga
tatttcaattttattttactcAAAGATATCTGTACAGTGTGTCCCAGAAA
GAATTACCCTCTTCAACACtgagaaaaaatataatttttttttataaaaa
ctgacATTTTCTCTCTTATTCTCTCTCTCAGAGTTCAGATAAAAACTGAT
TACTGGAATCTTTATATTTTTAGTACCACAAGCATT Coding sequence (CDS) from alignment at scaffold_305:235897..238382+ >TCONS_00058078 ID=TCONS_00058078|Name=TCONS_00058078|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_305:235897..238382+ (Clytia hemisphaerica) ATGATAGATGTACCCTTCATTGCCATGACAGCAACAGCAACCATGGAGAT GAAGAAATTCATCATTTGTAATCTCGACCTGACTGAACCTTTGCTGCTTG TACAATCCCCTGAAAAACCAAACATAAAATACAACCTTATTGAATTACCT CACAAAAACATCGAATTCATCTTTATGCCACTAGTTAACtatctcaaaga aaaattttacgACGCTGACAAATTCATAATCTTTTGTAGAACCATTGACG ATACCAGGCCAATATATCAACTTTTTAGGCAGCACATCAAAGTAAAAAAC CCCACCCTTCGTCCATATGCAAAGTTTCATGCCAAAACCGAGGGtgattt aaaaagatttttatcaaaGGAATTCACTGATCCTAAGAGTAGAATCCGGA TCCTGATGGCAACAATGGCCTATGGTATGGGAGTCGACTGCAAAGGACTC TATGACGTCATACATTTTGGTCCTCCCAAAGATCTCGACGACTATTTTCA AGAGTCTGGAAGGGCTGGCCGTGATGGATGTCTGAGCAATTCCACCGTGA TTAAATACAAAAGGGCGCTCAATCCATCTTGTTTGTCCCCTGAGATAAAA CAATATTGCAATAATCAGTCTGATTGTAggagaaaacttttgttgtcaCA ATTTCAAGAAACCCCATATTTCCCTTCTATCACTCCAAAACACCAGTGTT GTGACATATGTCATCGTCAATGTGATTGTGGCACCTGTGTGAATGAGCAT GAACACCCTTGGTACATTAGAGAGATCACAGATTCTATTCAAAAGTTAAG AATTAAATGCTCTCTTAATGAAAACGGCAAATCGGTTCTCAAAGAAAAGT TGGTTGCCTTTCAATCACAAATCACTTCTGTGTCAAAAGGTGGTCTTTTA AATGGCAAGTTTTCTTCTGGCTTCCCAGATCAGTCAATCGAGGAAATTAT CAATATCGCAAGTGAGTTGACTACCAGTGAAATGTTAATAGAACACACTT CTTTGACAAATAACAAATTCTTCGAGGAAATTATTTCGCAAATTCAAGAA GTTCTTACCTTACCTGACTGTAAACTTGACAACATTGAAGAGCTTGAGTA CTTTAGTGATAATAATGACTTGAGTGTTGAATCTGAGAATGAGCTTAATC ATGATGCTTCTGCTGATGAGATTGTTAATGATAGTGGTTCTGATTTTAGT GATGACATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058078-exon-scaffold_305-1491911889:235897..235971 | TCONS_00058078-exon-scaffold_305-1491911889:235897..235971 | Clytia hemisphaerica | exon |
TCONS_00058078-exon-scaffold_305-1510915933:235897..235971 | TCONS_00058078-exon-scaffold_305-1510915933:235897..235971 | Clytia hemisphaerica | exon |
TCONS_00058078-exon-scaffold_305-1575043694:235897..235971 | TCONS_00058078-exon-scaffold_305-1575043694:235897..235971 | Clytia hemisphaerica | exon |
TCONS_00058078-exon-scaffold_305-1491911889:236465..236607 | TCONS_00058078-exon-scaffold_305-1491911889:236465..236607 | Clytia hemisphaerica | exon |
TCONS_00058078-exon-scaffold_305-1510915933:236465..236607 | TCONS_00058078-exon-scaffold_305-1510915933:236465..236607 | Clytia hemisphaerica | exon |
TCONS_00058078-exon-scaffold_305-1575043694:236465..236607 | TCONS_00058078-exon-scaffold_305-1575043694:236465..236607 | Clytia hemisphaerica | exon |
TCONS_00058078-exon-scaffold_305-1491911889:236868..238382 | TCONS_00058078-exon-scaffold_305-1491911889:236868..238382 | Clytia hemisphaerica | exon |
TCONS_00058078-exon-scaffold_305-1510915933:236868..238382 | TCONS_00058078-exon-scaffold_305-1510915933:236868..238382 | Clytia hemisphaerica | exon |
TCONS_00058078-exon-scaffold_305-1575043694:236868..238382 | TCONS_00058078-exon-scaffold_305-1575043694:236868..238382 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_305 | supercontig | scaffold_305:235897..238382 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00058078 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 1.212e-31 Identity = 94/342 (27.49%), Postives = 167/342 (48.83%), Query Frame = 1 Query: 88 GKYQVVYSSPEAILSRNRGLLKNQQFKTNTIAVYIDESHCIKKWGSKSKEAAAFRHWYGKLGEIRSMID-VPFIAMTATATMEMKKFIICNLDLTEPLLLVQSPEKPNIKYNLIELPHKNIEFIFMPLVNYLKEKFYDADKFIIFCRTIDDTRPIYQLFRQHIKVKNPTLRPYAKFHAKTEGDLKRFLSKEFTDPKSRIRILMATMAYGMGVDCKGLYDVIHFGPPKDLDDYFQESGRAGRDGCLSNSTVIKYKRALNPS-----------------CLSPEIKQYCNNQSDCRRKLLLSQFQETPYFPS---ITPKHQCCDICHRQCD-CGTCVNEHEHPW 1047
GKY++VY +PE S N GLL+ + + +DE+HCI +WG FR + KLG +++ + VP +A+TATA+ +++ I+ L+L P + ++PN+ Y + NI P + + II+C +R + Q ++ N + Y HA ++ + F + I+ ++AT+A+GMG++ + VIH+G PKD++ Y+QE GRAGRDG S+ V+ +N + + ++++Y ++ S CRR+++LS F++ + I +CCD C + D C + + + W
Sbjct: 634 GKYRIVYVTPE-YCSGNMGLLQQLEADIGITLIAVDEAHCISEWGHD------FRDSFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNL-YLEVRRKTGNILQDLQPFLVKTSSHWEFEGPTIIYC----PSRKMTQQVTGELRKLNLSCGTY---HAGMSFSTRKDIHHRFV--RDEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHS-SRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLDHCYSMDDSEDTSW 957
The following BLAST results are available for this feature:
|