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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058079 ID=TCONS_00058079|Name=TCONS_00058079|organism=Clytia hemisphaerica|type=transcript|length=1993bp
TGATTGCAAGGCTTTTGAGACAACAGTCTCTAAAACAGaacaaacaaaac
attttaaaattttctttgttgcaTTAACATATGTAATGGCAAGTACCAAG
TTGTTTACTCTTCCCCAGAGGCCATCCTTTCGAGAAATCGTGgtcttttg
aaaaatcaacaatTCAAAACCAACACAATCGCAGTTTATATTGATGAAAG
TCATTGTATCAAAAAGTGGTATGTAGTAAGAAattcatttttgttgtttt
ctttgagTAGTGTGTTTTCAGATATTTAAGAAATATTGTCAGCTTATGAT
TATGAGTTTTGGCCAACATTCCATTAGATAAACTTTAGTGTGAgtctatg
tttttttttgtcatcgaTATATTTTgggtggtttttcgaagttttcaAAT
GCTGTATTTAACTGATTTACTGAGGTAAGATAGAACCCGGAAGTTTTATC
TAGgcttttcaaattgttttttaaccAGGGGAAGCAAATCCAAAGAAGCT
GCCGCATTTCGACATTGGTATGGTAAGCTGGGTGAGATAAGGTCAATGAT
AGATGTACCCTTCATTGCCATGACAGCAACAGCAACCATGGAGATGAAGA
AATTCATCATTTGTAATCTCGACCTGACTGAACCTTTGCTGCTTGTACAA
TCCCCTGAAAAACCAAACATAAAATACAACCTTATTGAATTACCTCACAA
AAACATCGAATTCATCTTTATGCCACTAGTTAACtatctcaaagaaaaat
tttacgACGCTGACAAATTCATAATCTTTTGTAGAACCATTGACGATACC
AGGCCAATATATCAACTTTTTAGGCAGCACATCAAAGTAAAAAACCCCAC
CCTTCGTCCATATGCAAAGTTTCATGCCAAAACCGAGGGtgatttaaaaa
gatttttatcaaaGGAATTCACTGATCCTAAGAGTAGAATCCGGATCCTG
ATGGCAACAATGGCCTATGGTATGGGAGTCGACTGCAAAGGACTCTATGA
CGTCATACATTTTGGTCCTCCCAAAGATCTCGACGACTATTTTCAAGAGT
CTGGAAGGGCTGGCCGTGATGGATGTCTGAGCAATTCCACCGTGATTAAA
TACAAAAGGGCGCTCAATCCATCTTGTTTGTCCCCTGAGATAAAACAATA
TTGCAATAATCAGTCTGATTGTAggagaaaacttttgttgtcaCAATTTC
AAGAAACCCCATATTTCCCTTCTATCACTCCAAAACACCAGTGTTGTGAC
ATATGTCATCGTCAATGTGATTGTGGCACCTGTGTGAATGAGCATGAACA
CCCTTGGTACATTAGAGAGATCACAGATTCTATTCAAAAGTTAAGAATTA
AATGCTCTCTTAATGAAAACGGCAAATCGGTTCTCAAAGAAAAGTTGGTT
GCCTTTCAATCACAAATCACTTCTGTGTCAAAAGGTGGTCTTTTAAATGG
CAAGTTTTCTTCTGGCTTCCCAGATCAGTCAATCGAGGAAATTATCAATA
TCGCAAGTGAGTTGACTACCAGTGAAATGTTAATAGAACACACTTCTTTG
ACAAATAACAAATTCTTCGAGGAAATTATTTCGCAAATTCAAGAAGTTCT
TACCTTACCTGACTGTAAACTTGACAACATTGAAGAGCTTGAGTACTTTA
GTGATAATAATGACTTGAGTGTTGAATCTGAGAATGAGCTTAATCATGAT
GCTTCTGCTGATGAGATTGTTAATGATAGTGGTTCTGATTTTAGTGATGA
CATCTGACAAGTTTCCATTATGTTTTTTGTTATATTCttactaaaaaata
aaaatgatatttcaattttattttactcAAAGATATCTGTACAGTGTGTC
CCAGAAAGAATTACCCTCTTCAACACtgagaaaaaatataattttttttt
ataaaaactgacATTTTCTCTCTTATTCTCTCTCTCAGAGTTCAGATAAA
AACTGATTACTGGAATCTTTATATTTTTAGTACCACAAGCATT Run BLAST on NCBI transcript from alignment at scaffold_305:235897..238382+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058079 ID=TCONS_00058079|Name=TCONS_00058079|organism=Clytia hemisphaerica|type=transcript|length=2486bp|location=Sequence derived from alignment at scaffold_305:235897..238382+ (Clytia hemisphaerica)
TGATTGCAAGGCTTTTGAGACAACAGTCTCTAAAACAGaacaaacaaaac
attttaaaattttctttgttgcaTTGTAAGTTTTTCAAgacatttcattg
cttttattCATGAGGAagacattacattacattataATTTTAGTTAATTT
TTTGACATTGACAGTTCATAGTTTGTGTTGGTTCTATTATATACACATCT
GAGACGAATCTTCATTTTGTTGATTTAGTAGTGAAGTCTTACAGAAATTG
ATATTgatagtttgttttgattttcatttcagatagaaaaatataaagat
tttatccTTTTCTTGGTCTCATAttcttatttcttttaaatcaaaaattg
aaaaaatatctcaGATTTGTGTTATTTGGGTCCCAAcagaccaaaaaaaa
ttatgcaaacttaattttgaaaaaaaaaatctctataGCCCACTACTACT
TgaatggaaatattttttgtaaatggAAGTATTAACGAGACAACAGTTCT
CTTCAGTAGCTTTACAATAAATCGTAAAAAGTTTGAGTTGTGATAGAAAT
TTTGTACTGTTTATTTAGAACATATGTAATGGCAAGTACCAAGTTGTTTA
CTCTTCCCCAGAGGCCATCCTTTCGAGAAATCGTGgtcttttgaaaaatc
aacaatTCAAAACCAACACAATCGCAGTTTATATTGATGAAAGTCATTGT
ATCAAAAAGTGGTATGTAGTAAGAAattcatttttgttgttttctttgag
TAGTGTGTTTTCAGATATTTAAGAAATATTGTCAGCTTATGATTATGAGT
TTTGGCCAACATTCCATTAGATAAACTTTAGTGTGAgtctatgttttttt
ttgtcatcgaTATATTTTgggtggtttttcgaagttttcaAATGCTGTAT
TTAACTGATTTACTGAGGTAAGATAGAACCCGGAAGTTTTATCTAGgctt
ttcaaattgttttttaaccAGGGGAAGCAAATCCAAAGAAGCTGCCGCAT
TTCGACATTGGTATGGTAAGCTGGGTGAGATAAGGTCAATGATAGATGTA
CCCTTCATTGCCATGACAGCAACAGCAACCATGGAGATGAAGAAATTCAT
CATTTGTAATCTCGACCTGACTGAACCTTTGCTGCTTGTACAATCCCCTG
AAAAACCAAACATAAAATACAACCTTATTGAATTACCTCACAAAAACATC
GAATTCATCTTTATGCCACTAGTTAACtatctcaaagaaaaattttacgA
CGCTGACAAATTCATAATCTTTTGTAGAACCATTGACGATACCAGGCCAA
TATATCAACTTTTTAGGCAGCACATCAAAGTAAAAAACCCCACCCTTCGT
CCATATGCAAAGTTTCATGCCAAAACCGAGGGtgatttaaaaagattttt
atcaaaGGAATTCACTGATCCTAAGAGTAGAATCCGGATCCTGATGGCAA
CAATGGCCTATGGTATGGGAGTCGACTGCAAAGGACTCTATGACGTCATA
CATTTTGGTCCTCCCAAAGATCTCGACGACTATTTTCAAGAGTCTGGAAG
GGCTGGCCGTGATGGATGTCTGAGCAATTCCACCGTGATTAAATACAAAA
GGGCGCTCAATCCATCTTGTTTGTCCCCTGAGATAAAACAATATTGCAAT
AATCAGTCTGATTGTAggagaaaacttttgttgtcaCAATTTCAAGAAAC
CCCATATTTCCCTTCTATCACTCCAAAACACCAGTGTTGTGACATATGTC
ATCGTCAATGTGATTGTGGCACCTGTGTGAATGAGCATGAACACCCTTGG
TACATTAGAGAGATCACAGATTCTATTCAAAAGTTAAGAATTAAATGCTC
TCTTAATGAAAACGGCAAATCGGTTCTCAAAGAAAAGTTGGTTGCCTTTC
AATCACAAATCACTTCTGTGTCAAAAGGTGGTCTTTTAAATGGCAAGTTT
TCTTCTGGCTTCCCAGATCAGTCAATCGAGGAAATTATCAATATCGCAAG
TGAGTTGACTACCAGTGAAATGTTAATAGAACACACTTCTTTGACAAATA
ACAAATTCTTCGAGGAAATTATTTCGCAAATTCAAGAAGTTCTTACCTTA
CCTGACTGTAAACTTGACAACATTGAAGAGCTTGAGTACTTTAGTGATAA
TAATGACTTGAGTGTTGAATCTGAGAATGAGCTTAATCATGATGCTTCTG
CTGATGAGATTGTTAATGATAGTGGTTCTGATTTTAGTGATGACATCTGA
CAAGTTTCCATTATGTTTTTTGTTATATTCttactaaaaaataaaaatga
tatttcaattttattttactcAAAGATATCTGTACAGTGTGTCCCAGAAA
GAATTACCCTCTTCAACACtgagaaaaaatataatttttttttataaaaa
ctgacATTTTCTCTCTTATTCTCTCTCTCAGAGTTCAGATAAAAACTGAT
TACTGGAATCTTTATATTTTTAGTACCACAAGCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058079-exon-scaffold_305-1491911889:235897..235971 | TCONS_00058079-exon-scaffold_305-1491911889:235897..235971 | Clytia hemisphaerica | exon |
| TCONS_00058079-exon-scaffold_305-1510915933:235897..235971 | TCONS_00058079-exon-scaffold_305-1510915933:235897..235971 | Clytia hemisphaerica | exon |
| TCONS_00058079-exon-scaffold_305-1575043694:235897..235971 | TCONS_00058079-exon-scaffold_305-1575043694:235897..235971 | Clytia hemisphaerica | exon |
| TCONS_00058079-exon-scaffold_305-1491911889:236465..238382 | TCONS_00058079-exon-scaffold_305-1491911889:236465..238382 | Clytia hemisphaerica | exon |
| TCONS_00058079-exon-scaffold_305-1510915933:236465..238382 | TCONS_00058079-exon-scaffold_305-1510915933:236465..238382 | Clytia hemisphaerica | exon |
| TCONS_00058079-exon-scaffold_305-1575043694:236465..238382 | TCONS_00058079-exon-scaffold_305-1575043694:236465..238382 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_305 | supercontig | scaffold_305:235897..238382 + |
Blast
BLAST of TCONS_00058079 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 3.447e-21 Identity = 75/289 (25.95%), Postives = 139/289 (48.10%), Query Frame = 3
Query: 507 FRHWYGKLGEIRSMID-VPFIAMTATATMEMKKFIICNLDLTEPLLLVQSPEKPNIKYNLIELPHKNIEFIFMPLVNYLKEKFYDADKFIIFCRTIDDTRPIYQLFRQHIKVKNPTLRPYAKFHAKTEGDLKRFLSKEFTDPKSRIRILMATMAYGMGVDCKGLYDVIHFGPPKDLDDYFQESGRAGRDGCLSNSTVIKYKRALNPS-----------------CLSPEIKQYCNNQSDCRRKLLLSQFQETPYFPS---ITPKHQCCDICHRQCD-CGTCVNEHEHPW 1307
FR + KLG +++ + VP +A+TATA+ +++ I+ L+L P + ++PN+ Y + NI P + + II+C +R + Q ++ N + Y HA ++ + F + I+ ++AT+A+GMG++ + VIH+G PKD++ Y+QE GRAGRDG S+ V+ +N + + ++++Y ++ S CRR+++LS F++ + I +CCD C + D C + + + W
Sbjct: 680 FRDSFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNL-YLEVRRKTGNILQDLQPFLVKTSSHWEFEGPTIIYC----PSRKMTQQVTGELRKLNLSCGTY---HAGMSFSTRKDIHHRFV--RDEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHS-SRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLDHCYSMDDSEDTSW 957
The following BLAST results are available for this feature:
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