Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058150 ID=TCONS_00058150|Name=TCONS_00058150|organism=Clytia hemisphaerica|type=transcript|length=2113bp catatttttgactttcttttatCATGTTCCCACTAAGCTCCAAACAACAT TTGAGGTCGTACTAGTTTTGAAAATCCAGAGTAAAAAAATAAAGGATTTT GACAGCGACCAATCATAATGTGTTCTTGTTTTCGCTTCATGCAATATGTT GTCAGTGTGTTGGTCTTATTAAGTGCAGGAGCCTTCATTCTATGTGGAGT GGTTAATTACTGGTGGGTTACTGACAATGTCATCATCACAACAGAAACAG GTTTATGGAAATCATGCACAAAGACTCTTCTGACCGGCAGAACCTGTTAT CAAAGAGgaaatttatttgaatttgCCGAAGTCTTTGGCAGCCAAACACC GATGCaTAAAGACATAATCATCATTGCGTTGATCGTTGCAGTGGTTACCG GTCTCATTCATTTGATTTGTATGTCAGTCACCATGTGTCAACGGTATCCT GCCAAATCCACCATCCTCATTGGTACCATTTTTCTGTTCTTCGGAgTTGC TTCATCTGTCTTCGGCACAATTTGGGCGTTAGTTCAAATTTCACATGAAA ACCAAGGGTGGGCTTTTTACGCCCTTTACGGTGGTGATGGTGCTATTATA CTAGCTTTCATTTTCTCAATTGTCCTGTTGTGTTCGCGTGCACCAGGTGC TTACCGCGCGACCAATAGAGATGATGAAATTGCAATGATTCCGCATTAAA TCAAAATTGGCGCCTGATGGCTATTGCCATGGTGATGATACTCTTTAAAT GTGAAGTCAACCAAGACAAGATATATTGCACTTATTTAGAGTGTATTCAA CGTGGAGTAATGGGAGATTAATGTTAGGATTTTGTCCTTCTGTCCATAGT GATCACGAGCTATATAATTTTAGATTGAAtggaaataataaatatattta ttgttttcaacaAACACTTGACTTGAAAATTAGAGAGCTAAACAATCGAG GAAGAATTTAGAAGCTcttaatcaaaaatatattatcaTAGTCAATTGTA TATTTAATAGTAcgaatataaattttttaaacttatttGACCTTATCAAT GGCAAACCTGCTATTAAGCATTTTTGAGATGATGAGATCATTTGAAGTGA CTTCGGTAACTTCTCGGTGTTTTTGAAATTCCTTGCTGTTTTAGCATGGT AAGATTTGAACAAGTACTAAGGGATTTTATTGATTAAAGCTACCTTTCGT TTTTATATTTTCCTTTTATTCTGacacccttgtgtcacagacctgttGGA ACCCCAATCCCACTGGAaactttggcaaaaatttcgtccccggtaggaaa atacccGGGAATTTTCATCCgaaaaatcaatgtttaaaaGCCCTTCTCCA AAATCATCCGCACTGGATCTTTTAAcctttaaacaataaaatttatatcC CCATTTGAATctcgatagaaatttttatccccactaggGAAAAATGTTCc gccggggctgtgagacaggggtgtattttgagttattattttttatttaa tcatGAAATATAATGTAGAAAATAGcttcaaataaatattttacagataT CTTGTAAacagaattttgaaatattttgacagtaaaatatttgaaaactt tcaTACAATTTTTAGTGTTTGCGTGACTATACTAAGAGTGTAGAGACCCC ATATATAGACCCACATGTTAGTTTTAAAAGGTTTGTAACTGGACATGCAT AGTTCGAAAGTAATCTTTTTCAAAGGCGCTCAGCTACCCAGATTTTTTTG ATAAGACTTCCAAAATGAGACTTTTGCACAAGAAGAATGGAATCAAGTAA AGgaagaattatttcttttctattctTCAAACAAAGTCTTTTTCGTTGGT GATGAGGCAGGTGGAAAAAAATAAGTCAAACTGTTTTTATTTcacatgct gaatattttttcttaattttgaaaaatttgaaaatgttataaGATTTATT TTAGACCAGTTGGTTTGTAAAATAGTAGCAAATTTACTAGATGAAATATC TTGAAGTTATTGTAGACTCAATTGGGCCGTAAACTATGTATCTTTAAACG CCTCAGGGTTCATGGACCTAATTTATAAGGAAATTCGCGAATATTCTTCC ATAAACTGTTCTT Run BLAST on NCBI transcript from alignment at scaffold_307:43343..48611- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058150 ID=TCONS_00058150|Name=TCONS_00058150|organism=Clytia hemisphaerica|type=transcript|length=5269bp|location=Sequence derived from alignment at scaffold_307:43343..48611- (Clytia hemisphaerica) CATATTTTTGACTTTCTTTTATCATGTTCCCACTAAGCTCCAAACAACAT
TTGAGGTCGTACTAGTTTTGAAAATCCAGGTGACTTGTTTAAAGTTTGTT
TTCCTCCCTCCAATGGAATATTTATCTAAGTTTCTTAGTTTTTAAAGGTT
ATTTGAGAGTCTTTGTTCCATCTTGCTTAAATTTAGTCGTTTATATTTAC
GTTCTTTTTGCTTGTTTATGTTGACATTAGCTTCTTTCTACAGTTGACCG
ACATGATTTTTTATAAAATCATTATATTATGTGTCTTGCTCGTAAGAGAG
AAATAGTGGATGTTGAGTAGGTTTTCAATTTCATGATTTAAGGATGAAAT
GTATTTTTGAGGCTTAGACGTTAGGCTTAGAAAACGATGACATTTTGTAT
TAAGGGNAAGCTCAGAGAAAACCACTTGATGATTCTTGTCTTAACCCTGT
TATACTTTAACTTAACAGGGCTAAACTATCTCCCTTACCTTATTTTGACA
TAAAAAACTGCCATACAAACAAATAATACTCTTTGTACCGCATCTGGATG
AATTCTTTTTCGCGTCAAAAATTTTCTTAGTAGGGGTTAGGGGGGGGGCG
AAAAAATATTGGGCCTTATGAGGGGGGGTTCGAAAATTTTTTCNGGGGGG
GGGGGTCCAATTTTTTTTGGGAAACTCAAGAGAAAATGTAGGAAGTCTAA
TTTCATAGTTTTACGTTTGAAGATTTCAAAAATTTTTCTGCCTTACGGCC
GACAACTCATAATTTATCTTATTGGATATATGTACATTTCATATTGGCAT
TATTTGGGCATCATCGGATCATCGCCTTGCCCTTTTGGTTTGTAAAATTG
AGNGACCGCTCCCTAACACTAAAAAATTTCAGTTATTTAACTTTAGTATC
AATGTTTGAGAATTCGAGAACTCGTCAAATGTTTCAGTTAGTTTGAATAA
TGATAAACTATCCCACCCCAGTCCCTGGTGGAATTTTTCCCAAAAACTGG
GGATAAAGATTTCTATCGAAATTCCATTGGGTAAATTAGCCAAATTCTAT
TCTTGTAAGCAAAAAGGAAATCCAGTTAGGATGATTTTGCAGTGCAATTA
TTTACATTGAATTTCGAATTGGGATGAAATGAAAGCCAATTTCACAGTGG
GGCTAAAACTTCAGAGTAACTTTTGCAATAGGACGAGATTTTGGCTGAAT
TTTCCAGAGGGGTGGTGTCCCGACGGGTTTTGGTCACTGGGTTTGTTTTA
TCAGCACGCAATATTACATGACGTTACGAACGTTATTGTTAAACGTTAAA
CAATGATTTTCGCTAGTTTGGAATCTCATACAGAGTCGACTTTCAACCTT
TATCTTAAAATGCAATTACCTACCGTATGTATTTTCAGAGTAAAAAAATA
AAGGATTTTGACAGCGACCAATCATAATGTGTTCTTGTTTTCGCTTCATG
CAATATGTTGTCAGTGTGTTGGTCTTATTAAGTGCAGGAGCCTTCATTCT
ATGTGGAGTGGTTAATTACTGGTGGGTTACTGACAATGTCATCATCACAA
CAGAAACAGGTGAGCTTAATCTTCCTTCGTATAGGCCATTCAGGGCCGAA
GTGAATTATGGGTAATCCTTGGTTAGACGTAAAAACATCCAAAACTTTAA
AACAACAAAGGTTGCTGTCCTGATTACCCGTGATTTCATTCACACTTTAT
GCACCCCTAGATTACTTGGTTTGCAAGCTGATAGCCGGTATGTCCGAGTC
AAAGTTCGAAAATCGACGCGAGAGAATTTTAAAAATTTTCTGACCTTTGA
AATTTTATGTTTTTAGAAAGATTAGTCGAGGTAGAGATTGATTATTCAAA
GTAATACAGGATCAAAAGCTTTAGGCTTTGTTTTGGAAATGGGAAATTTG
ACATCTGTTATCACTTTGCTGCTCCTTTTAATCATTTTGGTTTGCTCCTT
TTTAGGTTTATGGAAATCATGCACAAAGACTCTTCTGACCGGCAGAACCT
GTTATCAAAGAGGAAATTTATTTGAATTTGCCGAAGTCTTTGGCAGCCAA
ACACCGATGCGTAAGTTTTTGTGAATATCGATAAAATAAACACGCCCCTA
TCTCAGTGACTATCATAAAATTATCAACCGTTGGGAGGTGAAATTTATTT
AATTAAATGTGGATGTGATACGGGAAGGGATTTTTAATATCATGATACAC
CCCCTTCTCACAAAACCGGTGGGATTTTATCAGCCAGTTGGAGCAAAGAT
AACAAACCAAAACTTGATGAGGATTCATATTCCTATGTTTTTTATGGCAC
AATATTTTGCAGTGAGGATTGGCTTATCTAATTATTTTCAACGGGAAAAA
AAATTAGAGTATACAATCTTCCACTGGGGACGATATTTCGACCAATTTTC
CAGTGGGAAGGGCTCCCAATGAGTCTGTGAGAAGGGGGTTACATGGTGGC
TGATCTTCCTCCCGGTGAAGAGGGGATTCTATTTAATCTGTACTTTTTGT
AAATATTGTACAGAGGAACTGGTTCTGCCCTTACTTTTATTATACTGCTG
GCAAAAGAGTACCAGAAAACACCTATGCGCCTCATCTCATAACGTGAAGT
GAAACACTCATAAGTTCCCCGCAGAAAAATTGTATCTTTCATCTCTGAAA
CATCCTTGGTATTTTCCTAAAGCCAACTATGGCGTCTTAGAATAGTTTCT
TTATCGATATTTCTAAACCAATTAAAATACATTGCCTTGGCGACCAAGCC
CGTTGCTGAAGCAATTTTTTTCTATCCAATTTTTCGGATTCAGCAAATGG
GTTTTCGTCGCCAGGTTTTAGGCTACTACCAATACAGTTGAACTACAGTT
ATTGTAAAGATTGTAAATATTTCATTTCAGATAAAGACATAATCATCATT
GCGTTGATCGTTGCAGTGGTTACCGGTCTCATTCATTTGATTTGTATGTC
AGTCACCATGTGTCAACGGTATCCTGCCAAATCCACCATCCTCATTGGTA
CCATTTTTCTGTTCTTCGGAGGTAAGTTTCTTTTTTTTAGGTTTATCGCT
TGAACTTTATTAATTGTGTTTACTTGTAAAGCGTTTATCTTGGAATTTTT
ATCAATTAATTCCCAGGGAATTTTATTTCTGTTCTTATATTTCACTATAA
ATACAAAACTGACGAGGACTTTTAATGGTAGCAGTGGGATAAATGGATCA
GGGAAAAAATGCAATTATAGGCCTTTCTATGATCGCTTTAAGTGCCTCAT
TTTGAAACCATTATCAAGGTGATTAGATCCCTCGAGTCTTCCAATGTCTC
CTTCTGTGAATTATTAATTACCTTTTTAGAAATATTTTGAAAACGAGGCA
AGCGTTATACTCTTGACGTAATTTATGAAAAGGTCTATTGGAATAGAACA
ACTTTAGCTTTCCATGAGTTTTGGCTGTATATGCTCTAAAATAATGCCGA
AAAATTTGGTATTTCCGCTTAGCGGGACAAGTCGAGTGTGGTGTTTTAAG
GGAGTAAAATATTTTGTATTTCTAACATCAGCCATGGTTTTCGGCCGATT
TTGTCGGTCGATTTTTCCGTGCAGGGCTTGTGAGAAAGGATTGTCGTTTA
AGGTCCTGTAACAGACTTTCAAACTAATTTATTCATTTTTTCTTTCTCGC
AGTTGCTTCATCTGTCTTCGGCACAATTTGGGCGTTAGTTCAAATTTCAC
ATGAAAACCAAGGGTGGGCTTTTTACGCCCTTTACGGTGGTGATGGTGCT
ATTATACTAGCTTTCATTTTCTCAATTGTCCTGTTGTGTTCGCGTGCACC
AGGTGCTTACCGCGCGACCAATAGAGATGATGAAATTGCAATGATTCCGC
ATTAAATCAAAATTGGCGCCTGATGGCTATTGCCATGGTGATGATACTCT
TTAAATGTGAAGTCAACCAAGACAAGATATATTGCACTTATTTAGAGTGT
ATTCAACGTGGAGTAATGGGAGATTAATGTTAGGATTTTGTCCTTCTGTC
CATAGTGATCACGAGCTATATAATTTTAGATTGAATGGAAATAATAAATA
TATTTATTGTTTTCAACAAACACTTGACTTGAAAATTAGAGAGCTAAACA
ATCGAGGAAGAATTTAGAAGCTCTTAATCAAAAATATATTATCATAGTCA
ATTGTATATTTAATAGTACGAATATAAATTTTTTAAACTTATTTGACCTT
ATCAATGGCAAACCTGCTATTAAGCATTTTTGAGATGATGAGATCATTTG
AAGTGACTTCGGTAACTTCTCGGTGTTTTTGAAATTCCTTGCTGTTTTAG
CATGGTAAGATTTGAACAAGTACTAAGGGATTTTATTGATTAAAGCTACC
TTTCGTTTTTATATTTTCCTTTTATTCTGACACCCTTGTGTCACAGACCT
GTTGGAACCCCAATCCCACTGGAAACTTTGGCAAAAATTTCGTCCCCGGT
AGGAAAATACCCGGGAATTTTCATCCGAAAAATCAATGTTTAAAAGCCCT
TCTCCAAAATCATCCGCACTGGATCTTTTAACCTTTAAACAATAAAATTT
ATATCCCCATTTGAATCTCGATAGAAATTTTTATCCCCACTAGGGAAAAA
TGTTCCGCCGGGGCTGTGAGACAGGGGTGTATTTTGAGTTATTATTTTTT
ATTTAATCATGAAATATAATGTAGAAAATAGCTTCAAATAAATATTTTAC
AGATATCTTGTAAACAGAATTTTGAAATATTTTGACAGTAAAATATTTGA
AAACTTTCATACAATTTTTAGTGTTTGCGTGACTATACTAAGAGTGTAGA
GACCCCATATATAGACCCACATGTTAGTTTTAAAAGGTTTGTAACTGGAC
ATGCATAGTTCGAAAGTAATCTTTTTCAAAGGCGCTCAGCTACCCAGATT
TTTTTGATAAGACTTCCAAAATGAGACTTTTGCACAAGAAGAATGGAATC
AAGTAAAGGAAGAATTATTTCTTTTCTATTCTTCAAACAAAGTCTTTTTC
GTTGGTGATGAGGCAGGTGGAAAAAAATAAGTCAAACTGTTTTTATTTCA
CATGCTGAATATTTTTTCTTAATTTTGAAAAATTTGAAAATGTTATAAGA
TTTATTTTAGACCAGTTGGTTTGTAAAATAGTAGCAAATTTACTAGATGA
AATATCTTGAAGTTATTGTAGACTCAATTGGGCCGTAAACTATGTATCTT
TAAACGCCTCAGGGTTCATGGACCTAATTTATAAGGAAATTCGCGAATAT
TCTTCCATAAACTGTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058150-exon-scaffold_307-1575043694:48533..48611 | TCONS_00058150-exon-scaffold_307-1575043694:48533..48611 | Clytia hemisphaerica | exon |
TCONS_00058150-exon-scaffold_307-1575043694:47053..47223 | TCONS_00058150-exon-scaffold_307-1575043694:47053..47223 | Clytia hemisphaerica | exon |
TCONS_00058150-exon-scaffold_307-1575043694:46552..46656 | TCONS_00058150-exon-scaffold_307-1575043694:46552..46656 | Clytia hemisphaerica | exon |
TCONS_00058150-exon-scaffold_307-1575043694:45591..45731 | TCONS_00058150-exon-scaffold_307-1575043694:45591..45731 | Clytia hemisphaerica | exon |
TCONS_00058150-exon-scaffold_307-1575043694:43343..44959 | TCONS_00058150-exon-scaffold_307-1575043694:43343..44959 | Clytia hemisphaerica | exon |
TCONS_00058150-exon-scaffold_307-1510915933:48533..48611 | TCONS_00058150-exon-scaffold_307-1510915933:48533..48611 | Clytia hemisphaerica | exon |
TCONS_00058150-exon-scaffold_307-1510915933:47053..47223 | TCONS_00058150-exon-scaffold_307-1510915933:47053..47223 | Clytia hemisphaerica | exon |
TCONS_00058150-exon-scaffold_307-1510915933:46552..46656 | TCONS_00058150-exon-scaffold_307-1510915933:46552..46656 | Clytia hemisphaerica | exon |
TCONS_00058150-exon-scaffold_307-1510915933:45591..45731 | TCONS_00058150-exon-scaffold_307-1510915933:45591..45731 | Clytia hemisphaerica | exon |
TCONS_00058150-exon-scaffold_307-1510915933:43343..44959 | TCONS_00058150-exon-scaffold_307-1510915933:43343..44959 | Clytia hemisphaerica | exon |
TCONS_00058150-exon-scaffold_307-1491911889:48533..48611 | TCONS_00058150-exon-scaffold_307-1491911889:48533..48611 | Clytia hemisphaerica | exon |
TCONS_00058150-exon-scaffold_307-1491911889:47053..47223 | TCONS_00058150-exon-scaffold_307-1491911889:47053..47223 | Clytia hemisphaerica | exon |
TCONS_00058150-exon-scaffold_307-1491911889:46552..46656 | TCONS_00058150-exon-scaffold_307-1491911889:46552..46656 | Clytia hemisphaerica | exon |
TCONS_00058150-exon-scaffold_307-1491911889:45591..45731 | TCONS_00058150-exon-scaffold_307-1491911889:45591..45731 | Clytia hemisphaerica | exon |
TCONS_00058150-exon-scaffold_307-1491911889:43343..44959 | TCONS_00058150-exon-scaffold_307-1491911889:43343..44959 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_307 | supercontig | scaffold_307:43343..48611 - |
Blast
The following BLAST results are available for this feature:
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