TCONS_00058150 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058150
Unique NameTCONS_00058150
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2113

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058150 ID=TCONS_00058150|Name=TCONS_00058150|organism=Clytia hemisphaerica|type=transcript|length=2113bp
catatttttgactttcttttatCATGTTCCCACTAAGCTCCAAACAACAT
TTGAGGTCGTACTAGTTTTGAAAATCCAGAGTAAAAAAATAAAGGATTTT
GACAGCGACCAATCATAATGTGTTCTTGTTTTCGCTTCATGCAATATGTT
GTCAGTGTGTTGGTCTTATTAAGTGCAGGAGCCTTCATTCTATGTGGAGT
GGTTAATTACTGGTGGGTTACTGACAATGTCATCATCACAACAGAAACAG
GTTTATGGAAATCATGCACAAAGACTCTTCTGACCGGCAGAACCTGTTAT
CAAAGAGgaaatttatttgaatttgCCGAAGTCTTTGGCAGCCAAACACC
GATGCaTAAAGACATAATCATCATTGCGTTGATCGTTGCAGTGGTTACCG
GTCTCATTCATTTGATTTGTATGTCAGTCACCATGTGTCAACGGTATCCT
GCCAAATCCACCATCCTCATTGGTACCATTTTTCTGTTCTTCGGAgTTGC
TTCATCTGTCTTCGGCACAATTTGGGCGTTAGTTCAAATTTCACATGAAA
ACCAAGGGTGGGCTTTTTACGCCCTTTACGGTGGTGATGGTGCTATTATA
CTAGCTTTCATTTTCTCAATTGTCCTGTTGTGTTCGCGTGCACCAGGTGC
TTACCGCGCGACCAATAGAGATGATGAAATTGCAATGATTCCGCATTAAA
TCAAAATTGGCGCCTGATGGCTATTGCCATGGTGATGATACTCTTTAAAT
GTGAAGTCAACCAAGACAAGATATATTGCACTTATTTAGAGTGTATTCAA
CGTGGAGTAATGGGAGATTAATGTTAGGATTTTGTCCTTCTGTCCATAGT
GATCACGAGCTATATAATTTTAGATTGAAtggaaataataaatatattta
ttgttttcaacaAACACTTGACTTGAAAATTAGAGAGCTAAACAATCGAG
GAAGAATTTAGAAGCTcttaatcaaaaatatattatcaTAGTCAATTGTA
TATTTAATAGTAcgaatataaattttttaaacttatttGACCTTATCAAT
GGCAAACCTGCTATTAAGCATTTTTGAGATGATGAGATCATTTGAAGTGA
CTTCGGTAACTTCTCGGTGTTTTTGAAATTCCTTGCTGTTTTAGCATGGT
AAGATTTGAACAAGTACTAAGGGATTTTATTGATTAAAGCTACCTTTCGT
TTTTATATTTTCCTTTTATTCTGacacccttgtgtcacagacctgttGGA
ACCCCAATCCCACTGGAaactttggcaaaaatttcgtccccggtaggaaa
atacccGGGAATTTTCATCCgaaaaatcaatgtttaaaaGCCCTTCTCCA
AAATCATCCGCACTGGATCTTTTAAcctttaaacaataaaatttatatcC
CCATTTGAATctcgatagaaatttttatccccactaggGAAAAATGTTCc
gccggggctgtgagacaggggtgtattttgagttattattttttatttaa
tcatGAAATATAATGTAGAAAATAGcttcaaataaatattttacagataT
CTTGTAAacagaattttgaaatattttgacagtaaaatatttgaaaactt
tcaTACAATTTTTAGTGTTTGCGTGACTATACTAAGAGTGTAGAGACCCC
ATATATAGACCCACATGTTAGTTTTAAAAGGTTTGTAACTGGACATGCAT
AGTTCGAAAGTAATCTTTTTCAAAGGCGCTCAGCTACCCAGATTTTTTTG
ATAAGACTTCCAAAATGAGACTTTTGCACAAGAAGAATGGAATCAAGTAA
AGgaagaattatttcttttctattctTCAAACAAAGTCTTTTTCGTTGGT
GATGAGGCAGGTGGAAAAAAATAAGTCAAACTGTTTTTATTTcacatgct
gaatattttttcttaattttgaaaaatttgaaaatgttataaGATTTATT
TTAGACCAGTTGGTTTGTAAAATAGTAGCAAATTTACTAGATGAAATATC
TTGAAGTTATTGTAGACTCAATTGGGCCGTAAACTATGTATCTTTAAACG
CCTCAGGGTTCATGGACCTAATTTATAAGGAAATTCGCGAATATTCTTCC
ATAAACTGTTCTT
Run BLAST on NCBI

transcript from alignment at scaffold_307:43343..48611-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058150 ID=TCONS_00058150|Name=TCONS_00058150|organism=Clytia hemisphaerica|type=transcript|length=5269bp|location=Sequence derived from alignment at scaffold_307:43343..48611- (Clytia hemisphaerica)
CATATTTTTGACTTTCTTTTATCATGTTCCCACTAAGCTCCAAACAACAT TTGAGGTCGTACTAGTTTTGAAAATCCAGGTGACTTGTTTAAAGTTTGTT TTCCTCCCTCCAATGGAATATTTATCTAAGTTTCTTAGTTTTTAAAGGTT ATTTGAGAGTCTTTGTTCCATCTTGCTTAAATTTAGTCGTTTATATTTAC GTTCTTTTTGCTTGTTTATGTTGACATTAGCTTCTTTCTACAGTTGACCG ACATGATTTTTTATAAAATCATTATATTATGTGTCTTGCTCGTAAGAGAG AAATAGTGGATGTTGAGTAGGTTTTCAATTTCATGATTTAAGGATGAAAT GTATTTTTGAGGCTTAGACGTTAGGCTTAGAAAACGATGACATTTTGTAT TAAGGGNAAGCTCAGAGAAAACCACTTGATGATTCTTGTCTTAACCCTGT TATACTTTAACTTAACAGGGCTAAACTATCTCCCTTACCTTATTTTGACA TAAAAAACTGCCATACAAACAAATAATACTCTTTGTACCGCATCTGGATG AATTCTTTTTCGCGTCAAAAATTTTCTTAGTAGGGGTTAGGGGGGGGGCG AAAAAATATTGGGCCTTATGAGGGGGGGTTCGAAAATTTTTTCNGGGGGG GGGGGTCCAATTTTTTTTGGGAAACTCAAGAGAAAATGTAGGAAGTCTAA TTTCATAGTTTTACGTTTGAAGATTTCAAAAATTTTTCTGCCTTACGGCC GACAACTCATAATTTATCTTATTGGATATATGTACATTTCATATTGGCAT TATTTGGGCATCATCGGATCATCGCCTTGCCCTTTTGGTTTGTAAAATTG AGNGACCGCTCCCTAACACTAAAAAATTTCAGTTATTTAACTTTAGTATC AATGTTTGAGAATTCGAGAACTCGTCAAATGTTTCAGTTAGTTTGAATAA TGATAAACTATCCCACCCCAGTCCCTGGTGGAATTTTTCCCAAAAACTGG GGATAAAGATTTCTATCGAAATTCCATTGGGTAAATTAGCCAAATTCTAT TCTTGTAAGCAAAAAGGAAATCCAGTTAGGATGATTTTGCAGTGCAATTA TTTACATTGAATTTCGAATTGGGATGAAATGAAAGCCAATTTCACAGTGG GGCTAAAACTTCAGAGTAACTTTTGCAATAGGACGAGATTTTGGCTGAAT TTTCCAGAGGGGTGGTGTCCCGACGGGTTTTGGTCACTGGGTTTGTTTTA TCAGCACGCAATATTACATGACGTTACGAACGTTATTGTTAAACGTTAAA CAATGATTTTCGCTAGTTTGGAATCTCATACAGAGTCGACTTTCAACCTT TATCTTAAAATGCAATTACCTACCGTATGTATTTTCAGAGTAAAAAAATA AAGGATTTTGACAGCGACCAATCATAATGTGTTCTTGTTTTCGCTTCATG CAATATGTTGTCAGTGTGTTGGTCTTATTAAGTGCAGGAGCCTTCATTCT ATGTGGAGTGGTTAATTACTGGTGGGTTACTGACAATGTCATCATCACAA CAGAAACAGGTGAGCTTAATCTTCCTTCGTATAGGCCATTCAGGGCCGAA GTGAATTATGGGTAATCCTTGGTTAGACGTAAAAACATCCAAAACTTTAA AACAACAAAGGTTGCTGTCCTGATTACCCGTGATTTCATTCACACTTTAT GCACCCCTAGATTACTTGGTTTGCAAGCTGATAGCCGGTATGTCCGAGTC AAAGTTCGAAAATCGACGCGAGAGAATTTTAAAAATTTTCTGACCTTTGA AATTTTATGTTTTTAGAAAGATTAGTCGAGGTAGAGATTGATTATTCAAA GTAATACAGGATCAAAAGCTTTAGGCTTTGTTTTGGAAATGGGAAATTTG ACATCTGTTATCACTTTGCTGCTCCTTTTAATCATTTTGGTTTGCTCCTT TTTAGGTTTATGGAAATCATGCACAAAGACTCTTCTGACCGGCAGAACCT GTTATCAAAGAGGAAATTTATTTGAATTTGCCGAAGTCTTTGGCAGCCAA ACACCGATGCGTAAGTTTTTGTGAATATCGATAAAATAAACACGCCCCTA TCTCAGTGACTATCATAAAATTATCAACCGTTGGGAGGTGAAATTTATTT AATTAAATGTGGATGTGATACGGGAAGGGATTTTTAATATCATGATACAC CCCCTTCTCACAAAACCGGTGGGATTTTATCAGCCAGTTGGAGCAAAGAT AACAAACCAAAACTTGATGAGGATTCATATTCCTATGTTTTTTATGGCAC AATATTTTGCAGTGAGGATTGGCTTATCTAATTATTTTCAACGGGAAAAA AAATTAGAGTATACAATCTTCCACTGGGGACGATATTTCGACCAATTTTC CAGTGGGAAGGGCTCCCAATGAGTCTGTGAGAAGGGGGTTACATGGTGGC TGATCTTCCTCCCGGTGAAGAGGGGATTCTATTTAATCTGTACTTTTTGT AAATATTGTACAGAGGAACTGGTTCTGCCCTTACTTTTATTATACTGCTG GCAAAAGAGTACCAGAAAACACCTATGCGCCTCATCTCATAACGTGAAGT GAAACACTCATAAGTTCCCCGCAGAAAAATTGTATCTTTCATCTCTGAAA CATCCTTGGTATTTTCCTAAAGCCAACTATGGCGTCTTAGAATAGTTTCT TTATCGATATTTCTAAACCAATTAAAATACATTGCCTTGGCGACCAAGCC CGTTGCTGAAGCAATTTTTTTCTATCCAATTTTTCGGATTCAGCAAATGG GTTTTCGTCGCCAGGTTTTAGGCTACTACCAATACAGTTGAACTACAGTT ATTGTAAAGATTGTAAATATTTCATTTCAGATAAAGACATAATCATCATT GCGTTGATCGTTGCAGTGGTTACCGGTCTCATTCATTTGATTTGTATGTC AGTCACCATGTGTCAACGGTATCCTGCCAAATCCACCATCCTCATTGGTA CCATTTTTCTGTTCTTCGGAGGTAAGTTTCTTTTTTTTAGGTTTATCGCT TGAACTTTATTAATTGTGTTTACTTGTAAAGCGTTTATCTTGGAATTTTT ATCAATTAATTCCCAGGGAATTTTATTTCTGTTCTTATATTTCACTATAA ATACAAAACTGACGAGGACTTTTAATGGTAGCAGTGGGATAAATGGATCA GGGAAAAAATGCAATTATAGGCCTTTCTATGATCGCTTTAAGTGCCTCAT TTTGAAACCATTATCAAGGTGATTAGATCCCTCGAGTCTTCCAATGTCTC CTTCTGTGAATTATTAATTACCTTTTTAGAAATATTTTGAAAACGAGGCA AGCGTTATACTCTTGACGTAATTTATGAAAAGGTCTATTGGAATAGAACA ACTTTAGCTTTCCATGAGTTTTGGCTGTATATGCTCTAAAATAATGCCGA AAAATTTGGTATTTCCGCTTAGCGGGACAAGTCGAGTGTGGTGTTTTAAG GGAGTAAAATATTTTGTATTTCTAACATCAGCCATGGTTTTCGGCCGATT TTGTCGGTCGATTTTTCCGTGCAGGGCTTGTGAGAAAGGATTGTCGTTTA AGGTCCTGTAACAGACTTTCAAACTAATTTATTCATTTTTTCTTTCTCGC AGTTGCTTCATCTGTCTTCGGCACAATTTGGGCGTTAGTTCAAATTTCAC ATGAAAACCAAGGGTGGGCTTTTTACGCCCTTTACGGTGGTGATGGTGCT ATTATACTAGCTTTCATTTTCTCAATTGTCCTGTTGTGTTCGCGTGCACC AGGTGCTTACCGCGCGACCAATAGAGATGATGAAATTGCAATGATTCCGC ATTAAATCAAAATTGGCGCCTGATGGCTATTGCCATGGTGATGATACTCT TTAAATGTGAAGTCAACCAAGACAAGATATATTGCACTTATTTAGAGTGT ATTCAACGTGGAGTAATGGGAGATTAATGTTAGGATTTTGTCCTTCTGTC CATAGTGATCACGAGCTATATAATTTTAGATTGAATGGAAATAATAAATA TATTTATTGTTTTCAACAAACACTTGACTTGAAAATTAGAGAGCTAAACA ATCGAGGAAGAATTTAGAAGCTCTTAATCAAAAATATATTATCATAGTCA ATTGTATATTTAATAGTACGAATATAAATTTTTTAAACTTATTTGACCTT ATCAATGGCAAACCTGCTATTAAGCATTTTTGAGATGATGAGATCATTTG AAGTGACTTCGGTAACTTCTCGGTGTTTTTGAAATTCCTTGCTGTTTTAG CATGGTAAGATTTGAACAAGTACTAAGGGATTTTATTGATTAAAGCTACC TTTCGTTTTTATATTTTCCTTTTATTCTGACACCCTTGTGTCACAGACCT GTTGGAACCCCAATCCCACTGGAAACTTTGGCAAAAATTTCGTCCCCGGT AGGAAAATACCCGGGAATTTTCATCCGAAAAATCAATGTTTAAAAGCCCT TCTCCAAAATCATCCGCACTGGATCTTTTAACCTTTAAACAATAAAATTT ATATCCCCATTTGAATCTCGATAGAAATTTTTATCCCCACTAGGGAAAAA TGTTCCGCCGGGGCTGTGAGACAGGGGTGTATTTTGAGTTATTATTTTTT ATTTAATCATGAAATATAATGTAGAAAATAGCTTCAAATAAATATTTTAC AGATATCTTGTAAACAGAATTTTGAAATATTTTGACAGTAAAATATTTGA AAACTTTCATACAATTTTTAGTGTTTGCGTGACTATACTAAGAGTGTAGA GACCCCATATATAGACCCACATGTTAGTTTTAAAAGGTTTGTAACTGGAC ATGCATAGTTCGAAAGTAATCTTTTTCAAAGGCGCTCAGCTACCCAGATT TTTTTGATAAGACTTCCAAAATGAGACTTTTGCACAAGAAGAATGGAATC AAGTAAAGGAAGAATTATTTCTTTTCTATTCTTCAAACAAAGTCTTTTTC GTTGGTGATGAGGCAGGTGGAAAAAAATAAGTCAAACTGTTTTTATTTCA CATGCTGAATATTTTTTCTTAATTTTGAAAAATTTGAAAATGTTATAAGA TTTATTTTAGACCAGTTGGTTTGTAAAATAGTAGCAAATTTACTAGATGA AATATCTTGAAGTTATTGTAGACTCAATTGGGCCGTAAACTATGTATCTT TAAACGCCTCAGGGTTCATGGACCTAATTTATAAGGAAATTCGCGAATAT TCTTCCATAAACTGTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036642XLOC_036642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058150-exon-scaffold_307-1575043694:48533..48611TCONS_00058150-exon-scaffold_307-1575043694:48533..48611Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1575043694:47053..47223TCONS_00058150-exon-scaffold_307-1575043694:47053..47223Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1575043694:46552..46656TCONS_00058150-exon-scaffold_307-1575043694:46552..46656Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1575043694:45591..45731TCONS_00058150-exon-scaffold_307-1575043694:45591..45731Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1575043694:43343..44959TCONS_00058150-exon-scaffold_307-1575043694:43343..44959Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1510915933:48533..48611TCONS_00058150-exon-scaffold_307-1510915933:48533..48611Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1510915933:47053..47223TCONS_00058150-exon-scaffold_307-1510915933:47053..47223Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1510915933:46552..46656TCONS_00058150-exon-scaffold_307-1510915933:46552..46656Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1510915933:45591..45731TCONS_00058150-exon-scaffold_307-1510915933:45591..45731Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1510915933:43343..44959TCONS_00058150-exon-scaffold_307-1510915933:43343..44959Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1491911889:48533..48611TCONS_00058150-exon-scaffold_307-1491911889:48533..48611Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1491911889:47053..47223TCONS_00058150-exon-scaffold_307-1491911889:47053..47223Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1491911889:46552..46656TCONS_00058150-exon-scaffold_307-1491911889:46552..46656Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1491911889:45591..45731TCONS_00058150-exon-scaffold_307-1491911889:45591..45731Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1491911889:43343..44959TCONS_00058150-exon-scaffold_307-1491911889:43343..44959Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_307supercontigscaffold_307:43343..48611 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (2.17288 tpm) - - (78.4526 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.0531 38.312 72.5512 78.4526 2.85194 2.17288 23.6383 22.1932 28.4942 28.9601 20.6703 17.9486 24.0215 20.2765 15.2691 13.5551 35.1989 43.5666 34.086 39.3833 45.0856 41.2878 35.5189 38.6587 18.167 14.6563 13.0253 9.09491 19.251 21.6661
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
200400600800100012001400160018002000Sequence
Match NameE-valueIdentityDescription
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