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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058132 ID=TCONS_00058132|Name=TCONS_00058132|organism=Clytia hemisphaerica|type=transcript|length=1588bp
ACGAAACAAAATGTCTGCCGAAAATGATCACGCTGGAGCAGGTGAAGAAG
AAGATGCTACTGAACTTCAATTTCCCAAAGAATTTGAGTCAGCAGAAACA
TTATTGAATTCAGAGGTTTTCATGTTGTTGGAACATCGTAAATCACAGAA
TGAAAATGCAGATGATGAACAAGAGATGAGTGAAGTTTTCATGAAAACAT
TGAATTATACTCAACGGTTCAGTCGATTCAAAAACAGAGAAACGATCGCT
CAAGTCAGAGGACTTCTATCGAAAAAGAAGTTGCACAAATTCGAACTGGC
TTGCATTGCTAATCTTTGTCCAGAGACAGCAGAAGAAGCAAAGACTCTTG
TACCAAGTTTGGAGGGTAGATTTGACGAAGACGAGCTACAGCAAATTCTT
GATGAAATTAAAACGCACAGAAGTTTCCAGTACTAATATGGAAAAAGGCT
TGGGTTTGCTTACAACTTTGATGCCAGACGAAAGATTCTCTTAGCATCTA
GTTTCTGAACATTTTTAATGGAAAGGTAGACAGCGTATGGCTAACGTTTT
TATGATGATGTCTTTTCTAGAACATGAAAAATGGCTTATTTATTGATTCA
TGAGGATAACTGTGCGTAGTCTTCTTTGTTGAGTGAAGTAAGGaactttt
tgtaaatatttttaccaatttttcatttttctgttaaTTCTAAAGACCTA
ACAATCAGATAAAAAATTGCATCGTCTGATTTTGATCACTGTTAAATGAC
CGACAATGAAatggttttgattttgagatATGCACCAGAATTTAAATCAA
agtatttcttataaaaaagatgaaCTTTGGGAATATTCTATAAAAATAGA
TACTAATAATAAAAGAAATCTAATCAATGATGGTTTAGTTTAGTCTTCTT
TTACAAAGCAGTATCGTGTGAATCTTGTGATGTCGTATCTGCGCTTTGTT
CCGCACGCTCCGATGGAGGGTCGAAACTTTTCGATCTCCTCCGTGGTACT
TCTTCAAAGTCCTCTTCCTCTGGGACGAAAAATGTCGACTTCGGTGAATT
ATCCAAACTAAATTTCTTTATCACAGTCATTTTGCTCGCTGATTTTTTCA
AACGTAGCgataaaaatttcttctcttctGGGACAATTATTATTTGTGGT
GGTTCAGGGGTAATTTCCCCATTTCTGGGACTTTCCCCTTCTTCTTCCGG
TAGTTGGTCTAAGCCCTCCAACAAATTGGGATCAGAAAGAGCTCGCTTAA
AACTATCAGTTGAAATGCTTCTCTGTTTGTTGCGACTTTTTCGTAAGGCT
TCCACTCGGTCGCCCACTAAAAGCCATGATGAAGttcgtttgaaattttc
caacccctcaTTCTCCTTTTCTTTGCGCTTGTGTTCGTCCGCTTTGTTGT
AACATTGTTGGAAGATGTCTAGTGTGCTTCCTGTACCGTTGAGCGTTGAT
AAGTATACTCTCTGTAAGGAAATAGAAAGTTTGACAGTCACTACAGAACT
ACAGTATTGGAAAAGGGCCACATACAGAAGTCCCAGAACAGATAATCTTc
gcttgataaaaacaaacaaaaactttgccaaccaaaag Run BLAST on NCBI transcript from alignment at scaffold_307:151562..158116+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058132 ID=TCONS_00058132|Name=TCONS_00058132|organism=Clytia hemisphaerica|type=transcript|length=6555bp|location=Sequence derived from alignment at scaffold_307:151562..158116+ (Clytia hemisphaerica)
ACGAAACAAAATGTCTGCCGAAAATGATCACGCTGGAGCAGGTGAAGAAG
AAGATGCTACTGAACTTCAATTTCCCAAAGGTATTAATTTATTTCATTAC
TTCATGTAGTCAACTAAAGGTTCTTTAAATCTAAAGGTGTTAAATTGTTA
AAGTTTTGTTATACTGGGGAATCTGAATTTGGTAATAACTTTGACTTTTT
TTGGGATGTATCCTCGCAGGagggggtcaacatccagataccagacccat
agccgggtggtggtgtctttttttcctttaaaagtctgaaaagtcaagtt
ggtattgatgggggtgggtccccNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNtcgataccaattttggggtggtggtgttaa
cttagctcaaaaggtcaaaagtcaggtttttgggctatgggttggtatta
taaatgttgacccccccccctgatccTCGACACAAAaaactttcagattt
ttttccggCATTGGGCTGATAAAGGGGTGGGAGGTCCAActacataccga
taaaaaaacaagtattgggaCAAAGATCTTTTCAGACAATTTCAAAGTCT
ATTTCCAGTGAAGGAAGAATAGTTTTTAATTGAGATCAGTTTTGGCACCG
GACTTTTTACGAACACCCCAGCCGTAATTAACtgaaccaatcgaacggta
tttttaatcaaactttgttgaacttaatcgaactttgttggcTGATTAAT
GTTCGACTAAAAGTTCGGTTGTTGAACTTTAATCGAatacaggaccctgc
cgacgcacccggactgtccggtgtatttgtccggtggcaaaaagtatcct
ttcgctacaccagacgcaataagtccggtgtcagtccggtgttgcataca
tgGAATTTTGGACGCCNNtacctgtctttaaaaatataaataaaagtaat
cacggaaaaggacgcaaaaaaaaagacataagtgtgagaacagagtaatc
aaactcgttagaaaaagtaccataagaagtcataaaaaatcaacctgaat
aaatgcaatcgaaatttcAGAGAACTTCagaattccccaaacaacattac
attactatgtcaaactcccatcacataaattttacaattacgtcagagta
gactacgctcgccaccgaagaggtttatttggaaaNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNatgttacaatccaattattgaaagtttgtctcggccttttataatg
agcgagacatacgttctctgattacgcaattttcatattgacattttcga
ggcattttaaTGTAACtggccggacatttatgaaacaaaaaattttaaag
aagcaccggacgcaccggactggtcatgtccggtgttttgattgtccggt
gcagtggaaaaaatatccttctccgacaccggacatccgacttccttaag
tccggtgtagagattgtccggtggtaaaaaaaattatcattttacaCCAG
ACTTTAGTGTATCCAGGGTCCTtcaaatactcacaaatttctcaaaatac
aaagttccaTTAAGTTCGATTAGTGAAATTGAACTTAAAAATCGAACTTA
ATTGAACTTTTTGTAAAGAGACCTCaacagttcgattagtttgattacat
taatcaaatttaatcaaacttaatcgaacttgaGCAACTGAAGGCCGCTC
CACTTGCGCGTAATTCGATCTCACTTTTTTCCGGCCTTTggcgacacttt
gaggaactttgaaggacccccgctggtgcaggcgtgtaccctcacatccc
ctgaccagtgggcactgATCCAACCCTCCGGAACCCCGGCCGGGACCTCC
AGGGGCCGTCCGCGGTgatacccaaaggaggtcatttttttctaattttc
aagcctttccgcctttccaagccttttaaaggcttcggatgactgctgga
gggtgctggctttgagggaaagcaaggcagagggtatctGAAGCGGTctg
aagggctgtggtaggctgtagggggctgtagaggcctcgattggtcccac
cggggcttgtacccaaaggaggtcattttttgaaatttttgccggctttt
gacaatactttgaggaactttgaagggcccccaacggtgcagacgtgtac
cctcacatccccctgaccagtgggtACCAATCGGACCCCCAAGACCTTGG
CCGGGACTcccaggggccgtccacggtagtttccaaaggaggtcattttt
tgttgtcaaactttTTCGAAcagagtttttttttgaatttgtcaaaCCTT
TCTTGTGGTCGAACTTTATCAAACCgagttttttgtcaaatttgtcaaac
atttctcgttgtcaaactttgttgaagTTAATATGTTtttgtcaaactta
atcgaatactcacaattttagcaaCTTGAAAAGTCcgattaaagaattta
atcgaacttttgtcgtgcgattaagttcgacaaagttcgattagttcggt
aatcgaactgttcgattaattacgtctggaacaccggacacgcaacGTCC
GGCCGGTGTTGGATGAGGATACTTTTTAACACCGGACAATCTCCTCAACA
CCAGACTTGATTCCGGTGCGcattactttttaaacaaaCTTTGTCCAGTG
TCCAGAAGTTCAAAAAATCAACACCGGACAAAATTTTTTCCGTGTGGCTG
AGGGGTACTTTTTGGCACCAGTCAAACACACCAGAATGATATAGCTTCTG
TTTCGCTAGAGCAACAGACTTGTATGAGTGTTTAGTAtgtacttattttt
attttgttacgcAGAATTTGAGTCAGCAGAAACATTATTGAATTCAGAGG
TTTTCATGTTGTTGGAACATCGTAAATCACAGAATGAAAATGCAGATGAT
GAACAAGAGATGAGTGAAGTTTTCATGAAAACATTGAATTATACTCAACG
GTTCAGTCGATTCAAAAACAGAGAAACGATCGCTCAAGTCAGAGGGTAAG
TAGTACTTCATCTCTACTCAGAAAACTGAAACTTATTTTCTACCTACTAG
TAGTTTTTGTAATAAATTTTCTGTTGGAGAGTAAGTTTTGGTGAGTCTGA
AATTTGTAAGCTGTTTTCTACATTATATGATAATTAGGAAATAAGtgcaa
aaaacaaaattaagggaatttaaaatttgtattttgtagGAAGAGGTTTT
AGTGAAGGAATCAAAGCTCAGAACTCTTTTTTGAGTCATTCGCCAAAATC
AATTTCTTACCGAGAAATACACGACGGGCACTGAAGTTAAAGTNCCTCTT
TTTTGAGTCATTCGCCAAAATCAATTTCTTACCGAGAAATACACGACGGA
TACTGAAGTTAAAGCTATTTACTCGCTCTTACTTATGCTCTTCTGTCTTA
CATTTTACAGACTTCTATCGAAAAAGAAGTTGCACAAATTCGAACTGGCT
TGCATTGCTAATCTTTGTCCAGAGACAGCAGAAGAAGCAAAGACTCTTGT
ACCAAGGTTAAAGTTTTTCCCTTGTTTGAGTTTTTGGTTTAGTAGTGTGA
CATGGTCTCGCATTGATAAAGTCTTGCTGAAATCCATAAACGGAATTTTC
ATTTAGTTTGGAAAGCAGaatcttttattattttgaacaaatttaaaTGA
GTTTGGGGTTTTTCCGCTTGAGTCAATCGCGAAAAGGAACTGCTCGTCTT
TCAAATGAAAACACGAGTTGAAATTTTCAATGCTTCATTCCGGAATCCAT
GAAGAAATCTCACGAAACGTCAGAAAGAAGTTCCGAATGTCTAAACGGCT
TATGACTCtttctcgcaaaattaaataaaaagttCAGTTTTTGACTTCGA
CTAAACTGAAACAGTCTGATAGTAGTGTTCTTTTCAAcatatccaaaata
tttttattggtgGGTATGGGCACTACTATTTGCAAATGATTGTATATATC
AATATTATTCTCTTATTTTTTCAGTTTGGAGGGTAGATTTGACGAAGACG
AGCTACAGCAAATTCTTGATGAAATTAAAACGCACAGAAGTTTCCAGTAC
TAATATGGAAAAAGGCTTGGGTTTGCTTACAACTTTGATGCCAGACGAAA
GATTCTCTTAGCATCTAGTTTCTGAACATTTTTAATGGAAAGGTAGACAG
CGTATGGCTAACGTTTTTATGATGATGTCTTTTCTAGAACATGAAAAATG
GCTTATTTATTGATTCATGAGGATAACTGTGCGTAGTCTTCTTTGTTGAG
TGAAGTAAGGaactttttgtaaatatttttaccaatttttcatttttctg
ttaaTTCTAAAGACCTAACAATCAGATAAAAAATTGCATCGTCTGATTTT
GATCACTGTTAAATGACCGACAATGAAatggttttgattttgagatATGC
ACCAGAATTTAAATCAAagtatttcttataaaaaagatgaaCTTTGGGAA
TATTCTATAAAAATAGATACTAATAATAAAAGAAATCTAATCAATGATGG
TTTAGTTTAGTCTTCTTTTACAAAGCAGTATCGTGTGAATCTTGTGATGT
CGTATCTGCGCTTTGTTCCGCACGCTCCGATGGAGGGTCGAAACTTTTCG
ATCTCCTCCGTGGTACTTCTTCAAAGTCCTCTTCCTCTGGGACGAAAAAT
GTCGACTTCGGTGAATTATCCAAACTAAATTTCTTTATCACAGTCATTTT
GCTCGCTGATTTTTTCAAACGTAGCgataaaaatttcttctcttctGGGA
CAATTATTATTTGTGGTGGTTCAGGGGTAATTTCCCCATTTCTGGGACTT
TCCCCTTCTTCTTCCGGTAGTTGGTCTAAGCCCTCCAACAAATTGGGATC
AGAAAGAGCTCGCTTAAAACTATCAGTTGAAATGCTTCTCTGTTTGTTGC
GACTTTTTCGTAAGGCTTCCACTCGGTCGCCCACTAAAAGCCATGATGAA
GttcgtttgaaattttccaacccctcaTTCTCCTTTTCTTTGCGCTTGTG
TTCGTCCGCTTTGTTGTAACATTGTTGGAAGATGTCTAGTGTGCTTCCTG
TACCGTTGAGCGTTGATAAGTATACTCTCTGTAAGGAAATAGAAAGTTTG
ACAGTCACTACAGAACTACAGTATTGGAAAAGGGCCACATACAGAAGTCC
CAGAACAGATAATCTTcgcttgataaaaacaaacaaaaactttgccaacc
aaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058132-exon-scaffold_307-1491911889:151562..151641 | TCONS_00058132-exon-scaffold_307-1491911889:151562..151641 | Clytia hemisphaerica | exon |
| TCONS_00058132-exon-scaffold_307-1510915933:151562..151641 | TCONS_00058132-exon-scaffold_307-1510915933:151562..151641 | Clytia hemisphaerica | exon |
| TCONS_00058132-exon-scaffold_307-1575043694:151562..151641 | TCONS_00058132-exon-scaffold_307-1575043694:151562..151641 | Clytia hemisphaerica | exon |
| TCONS_00058132-exon-scaffold_307-1491911889:155726..155906 | TCONS_00058132-exon-scaffold_307-1491911889:155726..155906 | Clytia hemisphaerica | exon |
| TCONS_00058132-exon-scaffold_307-1510915933:155726..155906 | TCONS_00058132-exon-scaffold_307-1510915933:155726..155906 | Clytia hemisphaerica | exon |
| TCONS_00058132-exon-scaffold_307-1575043694:155726..155906 | TCONS_00058132-exon-scaffold_307-1575043694:155726..155906 | Clytia hemisphaerica | exon |
| TCONS_00058132-exon-scaffold_307-1491911889:156322..156417 | TCONS_00058132-exon-scaffold_307-1491911889:156322..156417 | Clytia hemisphaerica | exon |
| TCONS_00058132-exon-scaffold_307-1510915933:156322..156417 | TCONS_00058132-exon-scaffold_307-1510915933:156322..156417 | Clytia hemisphaerica | exon |
| TCONS_00058132-exon-scaffold_307-1575043694:156322..156417 | TCONS_00058132-exon-scaffold_307-1575043694:156322..156417 | Clytia hemisphaerica | exon |
| TCONS_00058132-exon-scaffold_307-1491911889:156886..158116 | TCONS_00058132-exon-scaffold_307-1491911889:156886..158116 | Clytia hemisphaerica | exon |
| TCONS_00058132-exon-scaffold_307-1510915933:156886..158116 | TCONS_00058132-exon-scaffold_307-1510915933:156886..158116 | Clytia hemisphaerica | exon |
| TCONS_00058132-exon-scaffold_307-1575043694:156886..158116 | TCONS_00058132-exon-scaffold_307-1575043694:156886..158116 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_307 | supercontig | scaffold_307:151562..158116 + |
Blast
BLAST of TCONS_00058132 vs. Swiss-Prot (Human)
Match: RPB4 (DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens GN=POLR2D PE=1 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 5.256e-69 Identity = 109/142 (76.76%), Postives = 126/142 (88.73%), Query Frame = 2
Query: 11 MSAENDHAGAGE-EEDATELQFPKEFESAETLLNSEVFMLLEHRKSQNENADDEQEMSEVFMKTLNYTQRFSRFKNRETIAQVRGLLSKKKLHKFELACIANLCPETAEEAKTLVPSLEGRFDEDELQQILDEIKTHRSFQY 433
M+A AG+ EEDA++L FPKEFE+AETLLNSEV MLLEHRK QNE+A+DEQE+SEVFMKTLNYT RFSRFKNRETIA VR LL +KKLHKFELAC+ANLCPETAEE+K L+PSLEGRF+++ELQQILD+I+T RSFQY
Sbjct: 1 MAAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKRSFQY 142
The following BLAST results are available for this feature:
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