TCONS_00058182 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058182
Unique NameTCONS_00058182
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058182 ID=TCONS_00058182|Name=TCONS_00058182|organism=Clytia hemisphaerica|type=transcript|length=860bp
cttaaaaaaaaatagaaaacagttctaaaaagttgtgaaaatgaaaaaac
gaAAACCGCCAAACTTCAAAACATAGAGGCACGACATCCACTACTTAAAA
ACTGCGCAAGGTTTATAAATATATTATGcggtaaaaaaaacttaaaaaga
atattacttaaaaaaaaagatattcaacAGTCGTAATAAGATCTGTAAAA
AGGTCtgaataaattttattgttaaaatttcttaaaatccaAACTAGCGA
ATAAGAGGTTATATTATAACTGAATTTAAACACTATATTAAAAATGTTTA
GTAAAATTTAACTTTACTCAACCGGACAAATTCGTTTAAAAAGGGCGCCA
ATTTTTTTGGGATTCATAGCAGGGGTCTCACTTTGCTTTTGTTAGGCCGA
AAAAAGTCAAAGTAGCTCcgaataatttttcagtttttacaGGCGAATGT
ACCCTAAGCTATTCATCGTTTTAATAAAAGTTCCGAAAACCTTAACTTTT
AGAATTTAATAGTTTTCCCATTTCTCCCCTGCCCTAGACAGGAATTACCA
ATGCATGTAGTATGAAAAATATTGTAGTCAAAATAAGGATTTCGTGATAT
TATTACATGGCTCCTAATCTCTCTCAAAGACACAACAGTTTATCTAACTG
AACCCATCAAAGGTACCGaatacaaatttcaaaaaaagtttgcagttttt
tttataaagaattgGATATTATGGATCTAAAAAAGATACTTAAAATAAGT
TATACGTGTCTAAGAGTGGAATTAGAAGGATTTATACTGATATTATCAGA
GATTAAAGAAATCGAGACTATTCCATCCTCTTCGTTCACATGTCAATTCG
TCATAACTAC
Run BLAST on NCBI

transcript from alignment at scaffold_307:298453..299312

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058182 ID=TCONS_00058182|Name=TCONS_00058182|organism=Clytia hemisphaerica|type=transcript|length=860bp|location=Sequence derived from alignment at scaffold_307:298453..299312 (Clytia hemisphaerica)
GTAGTTATGACGAATTGACATGTGAACGAAGAGGATGGAATAGTCTCGAT
TTCTTTAATCTCTGATAATATCAGTATAAATCCTTCTAATTCCACTCTTA
GACACGTATAACTTATTTTAAGTATCTTTTTTAGATCCATAATATCcaat
tctttataaaaaaaactgcaaactttttttgaaatttgtattCGGTACCT
TTGATGGGTTCAGTTAGATAAACTGTTGTGTCTTTGAGAGAGATTAGGAG
CCATGTAATAATATCACGAAATCCTTATTTTGACTACAATATTTTTCATA
CTACATGCATTGGTAATTCCTGTCTAGGGCAGGGGAGAAATGGGAAAACT
ATTAAATTCTAAAAGTTAAGGTTTTCGGAACTTTTATTAAAACGATGAAT
AGCTTAGGGTACATTCGCCtgtaaaaactgaaaaattattcgGAGCTACT
TTGACTTTTTTCGGCCTAACAAAAGCAAAGTGAGACCCCTGCTATGAATC
CCAAAAAAATTGGCGCCCTTTTTAAACGAATTTGTCCGGTTGAGTAAAGT
TAAATTTTACTAAACATTTTTAATATAGTGTTTAAATTCAGTTATAATAT
AACCTCTTATTCGCTAGTTtggattttaagaaattttaacaataaaattt
attcaGACCTTTTTACAGATCTTATTACGACTgttgaatatctttttttt
taagtaatattctttttaagttttttttaccgCATAATATATTTATAAAC
CTTGCGCAGTTTTTAAGTAGTGGATGTCGTGCCTCTATGTTTTGAAGTTT
GGCGGTTTtcgttttttcattttcacaactttttagaactgttttctatt
tttttttaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036663XLOC_036663Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058182-exon-scaffold_307-1491911889:298453..299312TCONS_00058182-exon-scaffold_307-1491911889:298453..299312Clytia hemisphaericaexon
TCONS_00058182-exon-scaffold_307-1510915933:298453..299312TCONS_00058182-exon-scaffold_307-1510915933:298453..299312Clytia hemisphaericaexon
TCONS_00058182-exon-scaffold_307-1575043694:298453..299312TCONS_00058182-exon-scaffold_307-1575043694:298453..299312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_307supercontigscaffold_307:298453..299312 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.326984	0.106287	0.0617046	0.181105	0.808419	0.406524	1.33123	1.24628	0.459238	0.398189	0.165639	0.217769	0.253711	0.752804	0.247563	0.531346	0.286376	0.209662	0.173796	0.242486	0.579602	0.539718	0.56237	0.965743	0.760647	0.88774	0.67254	0.558252	1.02829	1.17092
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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