TCONS_00058188 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058188
Unique NameTCONS_00058188
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058188 ID=TCONS_00058188|Name=TCONS_00058188|organism=Clytia hemisphaerica|type=transcript|length=491bp
TTTTGTGACTGGTGTACTAACTTTGGTGAGATCGCGAAGAGTGTTCCGAC
TATTACCGATTAAACTGACTTTGACCCTGGCTATGATTGCCGTCACAGCT
TGCGTGTATAACTATGACAGTTTTTTGGCAATCTTTAGAAATGATGACTT
GGAACAGGAGCTCAAACCAGAGAGAACCCTTTTCGGACAAGTCGCTAAAC
TTTTCAGACAGATTTTTGGCGCAATATTTTACGCTATATACCTATATGCG
TATTTCATATGCGCATTGTTGATTCCACCTTTTATCTTGTTTGTCGGTTA
TCTAAGCATCGAAGGTATCCCGCAAATCGACATGGCGTCATATATGCCTA
CTTTTGTTCATCGAATCGGAAATTTTGCACGAAAGACGTTCCTTGTTCTT
TTAACATGGAAAAAAGCAATCGCGATACTGGCATCAACAATGACGATTTC
CGTCGCACTGTATATGAACTATGGATACTTTTCCGCATTCT
Run BLAST on NCBI

protein sequence of TCONS_00058188-protein

>TCONS_00058188-protein ID=TCONS_00058188-protein|Name=TCONS_00058188-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
FVTGVLTLVRSRRVFRLLPIKLTLTLAMIAVTACVYNYDSFLAIFRNDDL
EQELKPERTLFGQVAKLFRQIFGAIFYAIYLYAYFICALLIPPFILFVGY
LSIEGIPQIDMASYMPTFVHRIGNFARKTFLVLLTWKKAIAILASTMTIS
VALYMNYGYFSAF
Run BLAST on NCBI

transcript from alignment at scaffold_308:59024..59945+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058188 ID=TCONS_00058188|Name=TCONS_00058188|organism=Clytia hemisphaerica|type=transcript|length=922bp|location=Sequence derived from alignment at scaffold_308:59024..59945+ (Clytia hemisphaerica)
TTTTGTGACTGGTGTACTAACTTTGGTGAGATCGCGAAGAGTGTTCCGAC
TATTACCGATTAAACTGACTTTGACCCTGGCTATGATTGCCGTCACAGCT
TGCGTGTATAACTATGACAGTTTTTTGGCAATCTTTAGGTAAGACTCTTT
TATGAGTTACAATTCTTTCTCTGACCTTGCACTGGATATGCAACATTATA
TCATAAATTTCATTAACCCTCGAAACTCTGCACAACAGTCTTGTAATAGC
TATAAAAAACTGAGAACAAATAAATCAGTAGAACCTTTTCATTTAACCAA
CACTTAAGCCTTAGATAGATTAAATGACAGTTATCCTTTTTTTCAGTAGA
CTATACTAGAGTCTAAAGTAAAACTGGTAGAACTGATTTTGCCAAAAGGA
GTTTTGAGCctgtagagtttgccagtcgtttattgcatttttttcgTATC
GCCTATACGGGTGTAAATTCTGCGCTtatcattttcagctttttctatTA
CTCCAACAAAAGCATCGACTACATCTTAAATAAAAGCCTTATACTAAATT
GTGTTTCATTCTTATTTAGAAATGATGACTTGGAACAGGAGCTCAAACCA
GAGAGAACCCTTTTCGGACAAGTCGCTAAACTTTTCAGACAGATTTTTGG
CGCAATATTTTACGCTATATACCTATATGCGTATTTCATATGCGCATTGT
TGATTCCACCTTTTATCTTGTTTGTCGGTTATCTAAGCATCGAAGGTATC
CCGCAAATCGACATGGCGTCATATATGCCTACTTTTGTTCATCGAATCGG
AAATTTTGCACGAAAGACGTTCCTTGTTCTTTTAACATGGAAAAAAGCAA
TCGCGATACTGGCATCAACAATGACGATTTCCGTCGCACTGTATATGAAC
TATGGATACTTTTCCGCATTCT

Coding sequence (CDS) from alignment at scaffold_308:59024..59945+

>TCONS_00058188 ID=TCONS_00058188|Name=TCONS_00058188|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_308:59024..59945+ (Clytia hemisphaerica)
TTTGTGACTGGTGTACTAACTTTGGTGAGATCGCGAAGAGTGTTCCGACT
ATTACCGATTAAACTGACTTTGACCCTGGCTATGATTGCCGTCACAGCTT
GCGTGTATAACTATGACAGTTTTTTGGCAATCTTTAGAAATGATGACTTG
GAACAGGAGCTCAAACCAGAGAGAACCCTTTTCGGACAAGTCGCTAAACT
TTTCAGACAGATTTTTGGCGCAATATTTTACGCTATATACCTATATGCGT
ATTTCATATGCGCATTGTTGATTCCACCTTTTATCTTGTTTGTCGGTTAT
CTAAGCATCGAAGGTATCCCGCAAATCGACATGGCGTCATATATGCCTAC
TTTTGTTCATCGAATCGGAAATTTTGCACGAAAGACGTTCCTTGTTCTTT
TAACATGGAAAAAAGCAATCGCGATACTGGCATCAACAATGACGATTTCC
GTCGCACTGTATATGAACTATGGATACTTTTCCGCATTCTTTGTGACTGG
TGTACTAACTTTGGTGAGATCGCGAAGAGTGTTCCGACTATTACCGATTA
AACTGACTTTGACCCTGGCTATGATTGCCGTCACAGCTTGCGTGTATAAC
TATGACAGTTTTTTGGCAATCTTTAGAAATGATGACTTGGAACAGGAGCT
CAAACCAGAGAGAACCCTTTTCGGACAAGTCGCTAAACTTTTCAGACAGA
TTTTTGGCGCAATATTTTACGCTATATACCTATATGCGTATTTCATATGC
GCATTGTTGATTCCACCTTTTATCTTGTTTGTCGGTTATCTAAGCATCGA
AGGTATCCCGCAAATCGACATGGCGTCATATATGCCTACTTTTGTTCATC
GAATCGGAAATTTTGCACGAAAGACGTTCCTTGTTCTTTTAACATGGAAA
AAAGCAATCGCGATACTGGCATCAACAATGACGATTTCCGTCGCACTGTA
TATGAACTATGGATACTTTTCCGCATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036668XLOC_036668Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058188-proteinTCONS_00058188-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058188-exon-scaffold_308-1491911889:59024..59161TCONS_00058188-exon-scaffold_308-1491911889:59024..59161Clytia hemisphaericaexon
TCONS_00058188-exon-scaffold_308-1510915933:59024..59161TCONS_00058188-exon-scaffold_308-1510915933:59024..59161Clytia hemisphaericaexon
TCONS_00058188-exon-scaffold_308-1575043694:59024..59161TCONS_00058188-exon-scaffold_308-1575043694:59024..59161Clytia hemisphaericaexon
TCONS_00058188-exon-scaffold_308-1491911889:59593..59945TCONS_00058188-exon-scaffold_308-1491911889:59593..59945Clytia hemisphaericaexon
TCONS_00058188-exon-scaffold_308-1510915933:59593..59945TCONS_00058188-exon-scaffold_308-1510915933:59593..59945Clytia hemisphaericaexon
TCONS_00058188-exon-scaffold_308-1575043694:59593..59945TCONS_00058188-exon-scaffold_308-1575043694:59593..59945Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_308supercontigscaffold_308:59024..59945 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.125808	0	0	0	0	0	0	0	0	0	0	0	0.0836707	0.0868928	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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