TCONS_00058204 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058204
Unique NameTCONS_00058204
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length911

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058204 ID=TCONS_00058204|Name=TCONS_00058204|organism=Clytia hemisphaerica|type=transcript|length=911bp
CAGATTTTGAATTGCCTTTCAAAGCTTTGTTAAGAAGCAAAATTCTCTTA
AGATTTCCTCAATGTTTCCTTTTTAACATCGATTCATTGGGGATGTCGAT
CCATTGGGCATTAATTTGTGAAAGGATTGCTTCTGAACGTTCTTTGAAAA
CAAGAATGGCTGCACAACACAAAGACTTTATCAGAGAAGCTCAACGTATC
NTTGAAGACAAGAATGGCTGCACAACACAAAGACTTTATCAGAGAAGCTC
AACGTATCATATCAGTTGAACATTAAAATCAGACAAACTTCTGACTGGAG
AGTCAGAATATTCTCAATCTTAAATTCTGTTGTGACAAGACAATAAAGTC
ATCTATCAACTGGTGAACTATATTTGCGATATCTATCCTGCAGTGCACTT
GCACATAAATTTGGTTGGTAAAGAACTTTAAATAAATCCCAGCTGATATC
CAGCGTGGTTGTTTTAACGTTCTAGATGGACGTTAGATGGACTTTATTTC
GATGTTCTGTGTCAGCtcggatacacgtttttttataagaacatccagaa
gttttgaagcctttggatgtccttaaccttttgagttttaacactaAAGA
ATGCGAGAATCTTTGTCcgttttcctaaaaaatcgggtgttttaaagtcc
gcaaagccttaaaatttctTAATATACTGGCCACTAAAGCCTTATGTGTT
GAATGGCGATATGAGAAGTCTGCCCTTCTTGATTCCTGTATATAGAAGAA
TGTTTGATAaaatcttatttatttttttaacacaaGATGATGCTGCTAAA
AAGTTGTAAATATTGAACAAATAATATATTTCTCGTCGTAACTTCATAGA
CAAACATAGCTTATTAATTTCTGTGCTTTTGGATTGAGAAGTTTCTTATG
CTTCAAATagg
Run BLAST on NCBI

transcript from alignment at scaffold_308:180350..181738-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058204 ID=TCONS_00058204|Name=TCONS_00058204|organism=Clytia hemisphaerica|type=transcript|length=1389bp|location=Sequence derived from alignment at scaffold_308:180350..181738- (Clytia hemisphaerica)
CAGATTTTGAATTGCCTTTCAAAGCTTTGTTAAGAAGCAAAATTCTCTTA
AGATTTCCTCAATGTTTCCTTTTTAACATCGATTCATTGGGGATGTCGAT
CCATTGGGCATTAATTTGTGAAAGGTTTGTTATTCTTCTGAGATGCTAAA
AATTCTTAAAAGTTTCTTCGCCACTCTTATAACCCTATTATAAGAATATC
TTTTTCGAACAAATCAATCGCAATACACGTTTTTTATAAGAACATCCAAA
ATCTTTGAAGCCTTCGGATGTTCTTAACTTTTTGAGTTTAAAGCCTAAAA
ATAATGTTCTTATTTTCGCCATTTTTTGAGTATTTTTGTCCATTTTCTTA
AGAAATCGGGTGTGTTAAAGTCCGAGAAGCCTTAAATTGTTCTTAATATG
TTCTTGACAATTTGGCCATCGAAGTATTATGTCTTATATAGTTTGTTCTT
ATAAAAAAAACGTGTAGTAATGAATTTCCCTTTCGATGAATATTTTGTAG
TTGTCCTTTCTAGTTAGATCCCATGAGTTATTATGGCAAAAGTGTTGGAG
CTGTAAAGGTCATCATTCAGCCCCCTGAAATTTCTGTCTCCGTATATCTT
AGGATTGCTTCTGAACGTTCTTTGAAAACAAGAATGGCTGCACAACACAA
AGACTTTATCAGAGAAGCTCAACGTATCNTTGAAGACAAGAATGGCTGCA
CAACACAAAGACTTTATCAGAGAAGCTCAACGTATCATATCAGTTGAACA
TTAAAATCAGACAAACTTCTGACTGGAGAGTCAGAATATTCTCAATCTTA
AATTCTGTTGTGACAAGACAATAAAGTCATCTATCAACTGGTGAACTATA
TTTGCGATATCTATCCTGCAGTGCACTTGCACATAAATTTGGTTGGTAAA
GAACTTTAAATAAATCCCAGCTGATATCCAGCGTGGTTGTTTTAACGTTC
TAGATGGACGTTAGATGGACTTTATTTCGATGTTCTGTGTCAGCTCGGAT
ACACGTTTTTTTATAAGAACATCCAGAAGTTTTGAAGCCTTTGGATGTCC
TTAACCTTTTGAGTTTTAACACTAAAGAATGCGAGAATCTTTGTCCGTTT
TCCTAAAAAATCGGGTGTTTTAAAGTCCGCAAAGCCTTAAAATTTCTTAA
TATACTGGCCACTAAAGCCTTATGTGTTGAATGGCGATATGAGAAGTCTG
CCCTTCTTGATTCCTGTATATAGAAGAATGTTTGATAAAATCTTATTTAT
TTTTTTAACACAAGATGATGCTGCTAAAAAGTTGTAAATATTGAACAAAT
AATATATTTCTCGTCGTAACTTCATAGACAAACATAGCTTATTAATTTCT
GTGCTTTTGGATTGAGAAGTTTCTTATGCTTCAAATAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036676XLOC_036676Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058204-exon-scaffold_308-1575043694:181615..181738TCONS_00058204-exon-scaffold_308-1575043694:181615..181738Clytia hemisphaericaexon
TCONS_00058204-exon-scaffold_308-1575043694:180350..181136TCONS_00058204-exon-scaffold_308-1575043694:180350..181136Clytia hemisphaericaexon
TCONS_00058204-exon-scaffold_308-1510915933:181615..181738TCONS_00058204-exon-scaffold_308-1510915933:181615..181738Clytia hemisphaericaexon
TCONS_00058204-exon-scaffold_308-1510915933:180350..181136TCONS_00058204-exon-scaffold_308-1510915933:180350..181136Clytia hemisphaericaexon
TCONS_00058204-exon-scaffold_308-1491911889:181615..181738TCONS_00058204-exon-scaffold_308-1491911889:181615..181738Clytia hemisphaericaexon
TCONS_00058204-exon-scaffold_308-1491911889:180350..181136TCONS_00058204-exon-scaffold_308-1491911889:180350..181136Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_308supercontigscaffold_308:180350..181738 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.110798	0	0	0	0	0	0	0	0	0.0673329	0.0714008	0.0519395	0.0527615	0	0	0	0	0	0	0	0	0	0	0	0.176686	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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