TCONS_00058212 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058212
Unique NameTCONS_00058212
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058212 ID=TCONS_00058212|Name=TCONS_00058212|organism=Clytia hemisphaerica|type=transcript|length=454bp
TTAGTATCTTATCAAATGCAAGACATCTGAAAAATAATGAAGTTCCATTC
ATACACTTAATTGCATTCACAATACTCCGCATTTGGAAGATTATGGACCG
AAAGAAAGATTCTGCAGgtGAAACAAAATATGCCTGTTTGGCATCTTTTG
AGAAAAGCGTTGGCAAAACAACAATACAAACATTGATTGCTCGTGGAGTT
GGTATACCGGAGGCTGAATCACACTCTTTCTTATTGAAAGGAGCAGAGGG
ACACAAAGGTGGTACGACCACAAGCTTACAACAGGAAGTGATGACGAAAA
CCAATCTATTCTTGTTTTCAAATGAACTGGATCTTGGCTCTGCAAATACA
GCACACTCGCTAAACCAATCGCACGATGGAGGCTTTTCGGGAGGAACTAA
GACGGGCGGTTTGATTACAACTAGAGCACATGTTATTGGTTCGTCTAACA
GCAC
Run BLAST on NCBI

protein sequence of TCONS_00058212-protein

>TCONS_00058212-protein ID=TCONS_00058212-protein|Name=TCONS_00058212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
SILSNARHLKNNEVPFIHLIAFTILRIWKIMDRKKDSAGETKYACLASFE
KSVGKTTIQTLIARGVGIPEAESHSFLLKGAEGHKGGTTTSLQQEVMTKT
NLFLFSNELDLGSANTAHSLNQSHDGGFSGGTKTGGLITTRAHVIGSSNS
Run BLAST on NCBI

transcript from alignment at scaffold_309:47078..48376+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058212 ID=TCONS_00058212|Name=TCONS_00058212|organism=Clytia hemisphaerica|type=transcript|length=1299bp|location=Sequence derived from alignment at scaffold_309:47078..48376+ (Clytia hemisphaerica)
TTAGTATCTTATCAAATGCAAGACATCTGAAAAATAATGAAGTTCCATTC
ATACACTTAATTGCATTCACAATACTCCGCATTTGGAAGATTATGGACCG
AAAGAAAGATTCTGCAGGTATGTTGTTTTGTAACCAGGGAATTTCTCATA
TCAGATGATGTGAACAGAATCTTTACAGACAAAATTTTCAGACAAAAACA
TTCATTCACAAGATTTTTACAAGATTCACAAGATGCTTATATCCTTGAGC
ATTATCTTGTCAAAATTAGAGAAGTCGACATATATTagtcataaagaatg
aaattaaataaaaaaataacaacgTTTTGTTCTGTTCACAGTCAGTATGC
AAAAGAGCATTAATCTATTGACAACTTtacaaaattaatatcttttgaAA
CCTCTTAACATAACAACTTTAtttgcatttattttttttaaggtGAAACA
AAATATGCCTGTTTGGCATCTTTTGAGAAAAGCGTTGGCAAAACAACAAT
ACAAACATTGATTGCTCGTGGAGTTGGTATACCGGAGGCTGAATCACACT
CTTTCTTATTGAAAGGAGCAGAGGGACACAAAGGTGGTACGACCACGTAA
GTGTAACCTTAATTAATACTTCGAACCTTTGGCCTTTACTTGATCTAGAA
ACCCTGGACAAGAACACATTTTTGTGATTGATTATAATTGTGGGATGAGA
TTGTAAATTACCActaaaatcttttaaagatACTTATGATAAGTTGTCAA
AATATTCATCAACATACATACCAGAAGTGATAAACAATTAAAAGTTTTCT
ACTTGATCAAGATGTGTTTCTGTCTTTTAATTATTTGATTATGCTCGAAT
TGCCTAATCTCCTATCAGTTTATTCTTGACTTAAATTTAACAAACTCAAA
GTCTTACAGAGACTATCAGAAGGGAAATCAAGAAAAGTCAAAGGTTTACT
AGAGTGAATAAATCCTGGAGTAGTCATCATTTATAGAAAATAATGATTGC
AGATGGGTAATGAAATTATCATGACTGTAGTACTTTGAATAGGAACTTCA
CATTTTGTCTTTTCCAGTATTAGGATATGTTACTTTGaccttatttttat
ttattttgctaCACAGAAGCTTACAACAGGAAGTGATGACGAAAACCAAT
CTATTCTTGTTTTCAAATGAACTGGATCTTGGCTCTGCAAATACAGCACA
CTCGCTAAACCAATCGCACGATGGAGGCTTTTCGGGAGGAACTAAGACGG
GCGGTTTGATTACAACTAGAGCACATGTTATTGGTTCGTCTAACAGCAC

Coding sequence (CDS) from alignment at scaffold_309:47078..48376+

>TCONS_00058212 ID=TCONS_00058212|Name=TCONS_00058212|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at scaffold_309:47078..48376+ (Clytia hemisphaerica)
AGTATCTTATCAAATGCAAGACATCTGAAAAATAATGAAGTTCCATTCAT
ACACTTAATTGCATTCACAATACTCCGCATTTGGAAGATTATGGACCGAA
AGAAAGATTCTGCAGgtGAAACAAAATATGCCTGTTTGGCATCTTTTGAG
AAAAGCGTTGGCAAAACAACAATACAAACATTGATTGCTCGTGGAGTTGG
TATACCGGAGGCTGAATCACACTCTTTCTTATTGAAAGGAGCAGAGGGAC
ACAAAGGTGGTACGACCACAAGCTTACAACAGGAAGTGATGACGAAAACC
AATCTATTCTTGTTTTCAAATGAACTGGATCTTGGCTCTGCAAATACAGC
ACACTCGCTAAACCAATCGCACGATGGAGGCTTTTCGGGAGGAACTAAGA
CGGGCGGTTTGATTACAACTAGAGCACATGTTATTGGTTCGTCTAACAGC
AGTATCTTATCAAATGCAAGACATCTGAAAAATAATGAAGTTCCATTCAT
ACACTTAATTGCATTCACAATACTCCGCATTTGGAAGATTATGGACCGAA
AGAAAGATTCTGCAGgtGAAACAAAATATGCCTGTTTGGCATCTTTTGAG
AAAAGCGTTGGCAAAACAACAATACAAACATTGATTGCTCGTGGAGTTGG
TATACCGGAGGCTGAATCACACTCTTTCTTATTGAAAGGAGCAGAGGGAC
ACAAAGGTGGTACGACCACAAGCTTACAACAGGAAGTGATGACGAAAACC
AATCTATTCTTGTTTTCAAATGAACTGGATCTTGGCTCTGCAAATACAGC
ACACTCGCTAAACCAATCGCACGATGGAGGCTTTTCGGGAGGAACTAAGA
CGGGCGGTTTGATTACAACTAGAGCACATGTTATTGGTTCGTCTAACAGC
AGTATCTTATCAAATGCAAGACATCTGAAAAATAATGAAGTTCCATTCAT
ACACTTAATTGCATTCACAATACTCCGCATTTGGAAGATTATGGACCGAA
AGAAAGATTCTGCAGgtGAAACAAAATATGCCTGTTTGGCATCTTTTGAG
AAAAGCGTTGGCAAAACAACAATACAAACATTGATTGCTCGTGGAGTTGG
TATACCGGAGGCTGAATCACACTCTTTCTTATTGAAAGGAGCAGAGGGAC
ACAAAGGTGGTACGACCACAAGCTTACAACAGGAAGTGATGACGAAAACC
AATCTATTCTTGTTTTCAAATGAACTGGATCTTGGCTCTGCAAATACAGC
ACACTCGCTAAACCAATCGCACGATGGAGGCTTTTCGGGAGGAACTAAGA
CGGGCGGTTTGATTACAACTAGAGCACATGTTATTGGTTCGTCTAACAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036683XLOC_036683Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058212-proteinTCONS_00058212-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058212-exon-scaffold_309-1491911889:47078..47194TCONS_00058212-exon-scaffold_309-1491911889:47078..47194Clytia hemisphaericaexon
TCONS_00058212-exon-scaffold_309-1510915933:47078..47194TCONS_00058212-exon-scaffold_309-1510915933:47078..47194Clytia hemisphaericaexon
TCONS_00058212-exon-scaffold_309-1575043694:47078..47194TCONS_00058212-exon-scaffold_309-1575043694:47078..47194Clytia hemisphaericaexon
TCONS_00058212-exon-scaffold_309-1491911889:47520..47673TCONS_00058212-exon-scaffold_309-1491911889:47520..47673Clytia hemisphaericaexon
TCONS_00058212-exon-scaffold_309-1510915933:47520..47673TCONS_00058212-exon-scaffold_309-1510915933:47520..47673Clytia hemisphaericaexon
TCONS_00058212-exon-scaffold_309-1575043694:47520..47673TCONS_00058212-exon-scaffold_309-1575043694:47520..47673Clytia hemisphaericaexon
TCONS_00058212-exon-scaffold_309-1491911889:48194..48376TCONS_00058212-exon-scaffold_309-1491911889:48194..48376Clytia hemisphaericaexon
TCONS_00058212-exon-scaffold_309-1510915933:48194..48376TCONS_00058212-exon-scaffold_309-1510915933:48194..48376Clytia hemisphaericaexon
TCONS_00058212-exon-scaffold_309-1575043694:48194..48376TCONS_00058212-exon-scaffold_309-1575043694:48194..48376Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:47078..48376 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.154313	0	0	0	0	0	0	0	0	0	0.176483	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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