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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058266 ID=TCONS_00058266|Name=TCONS_00058266|organism=Clytia hemisphaerica|type=transcript|length=1920bp
AGATTATTTGagctatttttttctttgtcgaAACGGGAATTAATCAAGAC
ATCACAAAACATAAAATGCACTGCGGATTTGGAGAAAAATAACTGAACCA
TGataatttgtttgttttatgatttttgaaatattttcggTCAAAGTTTG
CTTTATGGAGGGCAGAGATTACAcacctgtctcagtgacccggtggcttA
TTTGAAATTCACCGAGGATAAAATAATCATTTAAAGATCCACTGGGGAAT
TTTCATAGACAAAGTTTTTAGACGCTTCTTATAAGATTATACTCTGATAA
GAATATTCATAATGAGATTGGCCAAAATAATCAAGAATAATAACCAAGAA
TGTACTAAGAATACCGCCATCATGGATTATTAACCGGTTactcgaagcgg
gctacacggctttttgcgcaatgcaattggttcttttcgcatgacgacgg
gcctacactggcCAGAGTtacccgtcgttaggaaaattcattgtgccgtc
actttttcaaaggaaaatgaacaatgcgttgacgtcatttctttcatttt
ttgtttctgacgtcagaaattataacaattttttatcccttttcgcttgt
ttttttcgctttattttgctatttttcctggataaagcgctaagaATCAA
TCGaggctgaaggaaacggttaacaaatacaagcTCGGTTGTTACTTGAC
CAATCAATGAAGAAAAGAGGTCATCCATACATCGAgctcagttaaacttc
atttgCTTCGACATTCTGAAAACAACTCTCTTTTAACAGCCTCCATTGAT
CTTTATGTGAAACTTAGCCGTCAATCGCATGTGAAAGTCGAAAGTAGTAA
AATTGCGAATAAAATCGAGAAAATCGAgtaaaatcgaacaaaaatacTTA
CACACTTACCAAATATAATCGAGTAAAGAAATCGAAGAAAACTACGATTG
ACATAAGATCGAGTTAACACAATATCAATGAAGAAAAGAGGTTATCCATA
CATCGAgctcagttaaacttcatttgCTTCGACATTCTGAAAACAACTCT
CTTTTAACAGCCTCCATTGATCTTTATGTGAAACTTAACCGTCAATCGCA
TGTGAAAGTCGAAAGTAGTAAAATTGCGAATAAAATCGAGAAAATCGAgt
aaaatcgaacaaaaatacTTACACACTTACCAAATATAATCGAGTAAAGA
AATCGAAGAAAACTACGATTGACATAAGATCGAGTTAACACAATATCAAT
GAAGAAAAGAGGTTATCCATACATCGAGCCCAGTTAAACTTCATTTGCTT
CGACATTCTGAAAACAACTCTCTTTTAACAGCCTCCATTGATCTTTATGT
GAAACTTAGCCGTCAATCGCATGTGAAAGTCGAAAGTAGTAAAATTGCGA
ATAAAATCGAGAAAATCGAGNGAAAACTCTCTTTTAACGAACTATGATCC
CAATGCATCGCACCAACGGACTGTTGTAAATGAAACTTTGTTAACATAAA
CACGATTGGTTATGGGTATTGTTGACGCTAAAAGCAACCCATCAAACGAG
ACCCTACACGTTGACTTCTTCAGATCTAAGTGGTTTGGAGGAAAAGCCAA
CCAGACAGTACCCACAGTAGCAGAAATCTTGGACGATGTGAATATCAAAA
TACCTGTAATGGAGTGATTTAATTTTGCTTCGATTTTGAAGACGTCTTTG
ATATCATTCATTTCTCGGGAACTGTAAACACATTGGACAATGAACGAAAT
GTAGAGGAGGTACAGAGATTGTGATTCTGTTTAAATGATGGATGATCGAG
TTTTGCTAtccacattttttttaaatttatgacTCGTTAACTATGTTTAT
ACCAGGCTTTTTTAGTAAACcaacttctcacagacccggtaggatttttt
cggacagtagggataaaaat Run BLAST on NCBI transcript from alignment at scaffold_309:57267..60916- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058266 ID=TCONS_00058266|Name=TCONS_00058266|organism=Clytia hemisphaerica|type=transcript|length=3650bp|location=Sequence derived from alignment at scaffold_309:57267..60916- (Clytia hemisphaerica)
AGATTATTTGAGCTATTTTTTTCTTTGTCGAAACGGGAATTAATCAAGAC
ATCACAAAACATAAAATGCACTGCGGATTTGGAGAAAAATAACTGAACCA
TGATAATTTGTTTGTTTTATGATTTTTGAAATATTTTCGGTCAAAGTTTG
CTTTATGGAGGGCAGAGATTACACACCTGTCTCAGTGACCCGGTGGCTTA
TTTGAAATTCACCGAGGATAAAATAATCATTTAAAGATCCACTGGGGAAT
TTTCATAGACAAAGTTTTTAGACGCTTCTTATAAGATTATACTCTGATAA
GAATATTCATAATGAGATTGGCCAAAATAATCAAGAATAATAACCAAGAA
TGTACTAAGAATACCGCCATCATGGATTATTAACCGGTTACTCGAAGCGG
GCTACACGGCTTTTTGCGCAATGCAATTGGTTCTTTTCGCATGACGACGG
GCCTACACTGGCCAGAGTTACCCGTCGTTAGGAAAATTCATTGTGCCGTC
ACTTTTTCAAAGGAAAATGAACAATGCGTTGACGTCATTTCTTTCATTTT
TTGTTTCTGACGTCAGAAATTATAACAATTTTTTATCCCTTTTCGCTTGT
TTTTTTCGCTTTATTTTGCTATTTTTCCTGGATAAAGCGCTAAGAATCAA
TCGAGGCTGAAGGAAACGGTTAACAAATACAAGCTCGGTTGTTACTTGAC
CAATCAATGAAGAAAAGAGGTCATCCATACATCGAGCTCAGTTAAACTTC
ATTTGCTTCGACATTCTGAAAACAACTCTCTTTTAACAGCCTCCATTGAT
CTTTATGTGAAACTTAGCCGTCAATCGCATGTGAAAGTCGAAAGTAGTAA
AATTGCGAATAAAATCGAGAAAATCGAGTAAAATCGAACAAAAATACTTA
CACACTTACCAAATATAATCGAGTAAAGAAATCGAAGAAAACTACGATTG
ACATAAGATCGAGTTAACACAATATCAATGAAGAAAAGAGGTTATCCATA
CATCGAGCTCAGTTAAACTTCATTTGCTTCGACATTCTGAAAACAACTCT
CTTTTAACAGCCTCCATTGATCTTTATGTGAAACTTAACCGTCAATCGCA
TGTGAAAGTCGAAAGTAGTAAAATTGCGAATAAAATCGAGAAAATCGAGT
AAAATCGAACAAAAATACTTACACACTTACCAAATATAATCGAGTAAAGA
AATCGAAGAAAACTACGATTGACATAAGATCGAGTTAACACAATATCAAT
GAAGAAAAGAGGTTATCCATACATCGAGCCCAGTTAAACTTCATTTGCTT
CGACATTCTGAAAACAACTCTCTTTTAACAGCCTCCATTGATCTTTATGT
GAAACTTAGCCGTCAATCGCATGTGAAAGTCGAAAGTAGTAAAATTGCGA
ATAAAATCGAGAAAATCGAGNGAAAACTCTCTTTTAACGAACTATGATCC
CAATGCATCGCACCAACGGACTGTTGTAAATGAAACTTTGTTAACATAAA
CACGGTTAGAAATTTCTCAATTATAGTGTTTTTCTTGCAGTCATTTTATA
AAATAATGGTCTAATAAGAACTGTGAGGCTCAAAAATGATAACAACTATT
AGAACTAAAGCAGAGCCTGGATTGGCTAGAAAACTCATGGTTTCTAACAA
AATACACACTTCGTCTCAATGACCCAGTTGGGTATTTTAAAACGCTAGTT
TTGATAACTTTGTTATGGGTTATGGAAAAAATACGCGTATTACCGCGAAA
AAAATAAAATTTTTGTTTGAGTTGACCTACAATCCTGGCCAAAATATATT
GAGAATTTAGCTTATTTCCTCGTTTTTCAAAATTTGGAATTCGGGCGAGA
ACGTCGTTTTTGGGCTAATTGATAAATTTATTCGAGTATTTCGATTTGGG
TGGGGTTAATTGTCTTCCAGGCTATATTCTGAGCCCTGTTGGACCATTCT
GGGACTTTGGGATCCTCAGATTCTAAGGTCTTAAGACTTAAGTCTAATGT
TAAAACTCAGAGTTAAAATACTATTCGTCTAACCTAATTTAGAGCGCTTC
CAAAATACTTGTGGTTATAAAATTTCGTGGGAATTTCCCTTTTGTCTCAA
ATATTATGGCCAGGATTGTACAGGATGAAATTTATGACCGGGTTCTGACC
ATTTATATTCATCAAGTTCTGCTTTGGCTCGAAAATTTGACTAATTTTGA
CTGGGTTCCCTCATTAACACTTTTGGCAATTTGTTCACTTTGTTATCCAC
CGGGAAGATCTTATCGGGTCATAGATACAGGGGTGTATATGGATTGATTC
GAATGATTTAGACCATGACCAGCAGATTGCTAAAGTTCCAAAAATAAAGT
AAAAATTCAAAATGTCTGTGAACAATTTTTTGATACTTTTCTTACTCAAT
TTGAGGGTGCTGATTCCGAATTTGAATGTTACCAAGCTTGATAATGGTGC
ATAAATATATTTAACTAAATGTGTACGGTATTTTTCTGCTGATTACTTTT
CCGCTAATTTATAGATTGGTTATGGGTATTGTTGACGCTAAAAGCAACCC
ATCAAACGAGACCCTACACGTTGACTTCTTCAGGTATTATATTTGTTTAT
ATATTTTTCTTATTCCTAAAGAGTTTGCCATAATTTTTACCAGTGCCACG
CAAGAGCATAAAAATATTTAGAAATGAAAGGGCATTTTGCTCTAATTTGC
AATAACATTCCCTCAAGGGGGGGGGTACTAAGGTTTCTGTGATGACGGGC
ATTTTTTTTGACTTTTGGCGGCCGGGCCCTTAGAGGGATCCAAACTTCGA
AACGGACCCTTAGAGGGAATTAATCGAGGAAAAACCCAAACTTTCTTGAA
TTTTATGACCCTTCTTGGGACTATCTTACTTAAAATTCGAAAATGAACTT
GGGCTATTTTTAACCCTTTTAGGCCTTAGGGGAACTGGAACTCGATTTTT
GGTATTTTTATGACCCTTTATGGGATTTTGAAGATCCAAAAAACGGATCC
TTAAGGACGGCACATACCCGTACCCTTCTTTTGCCTAAGTACCCTCCCCC
CACCCGGGATTTACCCATTTGACTAATTTGACTTTCAATGAGATAGTGAG
ATTTTACTGCATATAAAATCTTTCCCACTTCTTTCATTATTTTAAGCATT
TTGACTTTCCATTCCAACCTCGTCTCTGCGTATTATCTAGGTTATTCTCT
GGCGTCAATCAGTAGTAACGTAAATAAAGCCTGGGATAAACGGGGATGAG
GTTGCTTCCCATTCATTATTCTTGTTTCAACTTTATATGACCTTTACTTT
CAGATCTAAGTGGTTTGGAGGAAAAGCCAACCAGACAGTACCCACAGTAG
CAGAAATCTTGGACGATGTGAATATCAAAATACCTGTAATGGAGTGATTT
AATTTTGCTTCGATTTTGAAGACGTCTTTGATATCATTCATTTCTCGGGA
ACTGTAAACACATTGGACAATGAACGAAATGTAGAGGAGGTACAGAGATT
GTGATTCTGTTTAAATGATGGATGATCGAGTTTTGCTATCCACATTTTTT
TTAAATTTATGACTCGTTAACTATGTTTATACCAGGCTTTTTTAGTAAAC
CAACTTCTCACAGACCCGGTAGGATTTTTTCGGACAGTAGGGATAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058266-exon-scaffold_309-1575043694:59413..60916 | TCONS_00058266-exon-scaffold_309-1575043694:59413..60916 | Clytia hemisphaerica | exon |
| TCONS_00058266-exon-scaffold_309-1575043694:58334..58402 | TCONS_00058266-exon-scaffold_309-1575043694:58334..58402 | Clytia hemisphaerica | exon |
| TCONS_00058266-exon-scaffold_309-1575043694:57267..57613 | TCONS_00058266-exon-scaffold_309-1575043694:57267..57613 | Clytia hemisphaerica | exon |
| TCONS_00058266-exon-scaffold_309-1510915933:59413..60916 | TCONS_00058266-exon-scaffold_309-1510915933:59413..60916 | Clytia hemisphaerica | exon |
| TCONS_00058266-exon-scaffold_309-1510915933:58334..58402 | TCONS_00058266-exon-scaffold_309-1510915933:58334..58402 | Clytia hemisphaerica | exon |
| TCONS_00058266-exon-scaffold_309-1510915933:57267..57613 | TCONS_00058266-exon-scaffold_309-1510915933:57267..57613 | Clytia hemisphaerica | exon |
| TCONS_00058266-exon-scaffold_309-1491911889:59413..60916 | TCONS_00058266-exon-scaffold_309-1491911889:59413..60916 | Clytia hemisphaerica | exon |
| TCONS_00058266-exon-scaffold_309-1491911889:58334..58402 | TCONS_00058266-exon-scaffold_309-1491911889:58334..58402 | Clytia hemisphaerica | exon |
| TCONS_00058266-exon-scaffold_309-1491911889:57267..57613 | TCONS_00058266-exon-scaffold_309-1491911889:57267..57613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:57267..60916 - |
Blast
The following BLAST results are available for this feature:
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