TCONS_00058268 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058268
Unique NameTCONS_00058268
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length963

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058268 ID=TCONS_00058268|Name=TCONS_00058268|organism=Clytia hemisphaerica|type=transcript|length=963bp
AAAAAAGTGGAAAGATACGAAAATACatgataaaaacaaataaattaacG
AATGTTGTCAGTTGTTTCCAATAAATACCCTTGAACTGCCAGTACACGAG
ATTGTACCCACTAGAATGGCTGGTGTGGAAGTTGGACAAGAGTTGGAATG
TTGTGTATGTTTGGAACAATTTGTAAAACCAAAGCTTTTGAATTGTATGC
ACACTTTATGTGAGGGATGTATCGACAAACTGATTCAGAGTGGAACTGTG
AAATACCCTGAATGTTGAGAAGAAACTAAGGTCCCAAATGGTGCATCTGA
GCTATCTACCAATTATATTGCACAAAATATTATCGAGAAAGTGAAAAATG
CTGCAAAGAAAGGCCCTTTCTGTCAAGATTGTGTCGTCCAGTTTCCTGCT
TCAAACCATTGCGAAACTTGTGTTTTGAATTTGTGTAAAAAGTGCACTGA
ATATCATGAGAGTTGTGTGAGGTTTGTAAGTCATAAAATTATTGACATAC
AAAATGTCACAAAGAAAATGTGTAGTCCGAAGCGTTACTGCCCGAAACAT
AACGAgctgttgaaatatttttgtgagCAATGCAAGGTGGTTGTTTGTAC
TGATTGTATGGTCAGTGTAGAGCACAAACAACATAACATCTCCTTGGTGT
CAGAAACTACTGCCAAAGCTAAAGAGGAATTGAAGCAAAAACTTGAAAAG
ATGAAAGACAAGAAGCAAACAATGGATGATTGTCTCCAACAAGCAAAGGT
TTTTTATAAAGATGTTATAGATGAAGATAAAGTGAACGTTGAATTAATCA
AGAAAACGTTTAACGAAGTGCGAAATATTCTCGCTGAAAAGGAAGAGCAG
CTCATTGCTCAGGTTCAAGCCCAAAGCATGTTAAAAGGTGAAAATCTTGA
TAAATTCTCAAAGGCTGTTCATGCAGTCACTCAGACAGTAAATTATATGG
AATCTGTCGTGAA
Run BLAST on NCBI

protein sequence of TCONS_00058268-protein

>TCONS_00058268-protein ID=TCONS_00058268-protein|Name=TCONS_00058268-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MCSPKRYCPKHNELLKYFCEQCKVVVCTDCMVSVEHKQHNISLVSETTAK
AKEELKQKLEKMKDKKQTMDDCLQQAKVFYKDVIDEDKVNVELIKKTFNE
VRNILAEKEEQLIAQVQAQSMLKGENLDKFSKAVHAVTQTVNYMESVV
Run BLAST on NCBI

transcript from alignment at scaffold_309:64625..68832-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058268 ID=TCONS_00058268|Name=TCONS_00058268|organism=Clytia hemisphaerica|type=transcript|length=4208bp|location=Sequence derived from alignment at scaffold_309:64625..68832- (Clytia hemisphaerica)
AAAAAAGTGGAAAGATACGAAAATACATGATAAAAACAAATAAATTAACG
AATGTTGTCAGTTGTTTCCAATAAATACCCTTGAACTGCCAGTACACGAG
ATTGTACCCACTAGAATGGCTGGTGTGGAAGTTGGACAAGAGTTGGAATG
TTGTGTATGTTTGGAACAATTTGTAAAACCAAAGCTTTTGAATTGTATGC
ACACTTTATGTGAGGGATGTATCGACAAACTGATTCAGAGTGGAACTGTG
AAATACCCTGAATGTTGAGAAGAAACTAAGGTTCGTTTTAATATTTTGCT
GATTTTACTGATTACTTTAGCACCTCTATGAGTTGGATCATAATGCATAA
CTGGTGTAAGTAATGTCCCGTAACAGCACCGTCGATTTTGAGGAGACTGA
AAAAACTCTATTTTGGTTGAGAGTCTCTTCGGTGGAGAGTAAACCATTTC
TAGCCTGTTCCTGCAGTTAAATTAGCCATTTGCCTATAGATTGACATAAC
AAAGACGATATAATTAAATAAAAGATGTGCACATATAGAAGGTGTCGTCG
GCTCTTTTTTTAGCTTTAGCGATTGAAATAACAACAATAGAGTTAAATAG
AATTATTACAGTAGGAAAATTGCTTCTAGACTGGATTATTATTGAATCAC
TAAAGATCAATACTCTTACTATACTATTTTAACTTATCACTTTCACCAGT
CTCCTCTCAAGCTTGCAGCGTTGCTTAAATGTTTATAGATTACTTATCTA
TGTTATAGGTCCCAAATGGTGCATCTGAGCTATCTACCAATTATATTGCA
CAAAATATTATCGAGAAAGTGAAAAATGCTGCAAAGAAAGGCCCTTTCTG
TCAAGATTGTGTCGTCCAGTTTCCTGCTTCAAACCATTGCGAAACTTGTG
TTTTGAATTTGTGTAAAAAGTGCACTGAATATCATGAGAGTTGTGTGAGG
TTTGTAAGTCATAAAATTATTGACATACAAAACGTATCTAAGAAGATTTC
TAGTACGAAACGTTATTGTCCGAAACACAACGAGCTGTTGAAATATTTTT
GCCAGCAATGCAAGGTTGTCGTATGTAATGATTGTTGTATGATAAGTGCA
CAACATAAACATCATGATATTACATTGGTGTCGGAAGCTATAGACAAAGC
CAAAGAAGAATTAAATCAAATGCTCAAAAAGATGAGAGAGAGTGAGTTAA
CAATGGTTGACTGTCTTGGGGAAGTCAGAGAATTTCACCAAAAAGTTGCT
GCAGAAGAGGAAAACAATGGTAATATGATCAAACAAGCTTTTGATGAAAT
AAGAGTTGTTCTTGCCAAGAAGGAAGAAGAATTGGTAAAACAGCTTGCAA
CAATTAGAGTAGACAAAAAGGAGAAGCTTAAATTTGACAGATTTTCAACA
GCAATCAGCAAAGTTTCCCAATCGGTGCAATATGTTGAATCTATCCTGAA
TGAAGATTGTGATGATCTAGATATCATATGTGATCTCACGAAACAATTAG
ATGAAATCCGCAAGGAATACAGTTTGAATGGTACATTTATTGTATCTTCT
ACACCTTTATATTTGCCATCGAAAGGAAAAACAACGAAACCGACACTTCT
GAACCTCAAGAATAATGCAATATTAACACTGCATCATAAAAATGCTGACT
CAGGAAGCTCGCTGGGCTTTGATATGAGCTTCGAAAAGTATTCACACAAT
CTTAGCAGGAATACATTGATATCTGAGCAAATAAGAGCCTTGTCATTATC
ATAATAATTTTTATAACCGGTATTGGATGATAATTATAAACAAAATATAG
TAACTAAAACAATGAGAGGTACATACATACACAATCATATACCAGTTATA
TTTTGAATACTTATGGTTCTTTGTTTTATAGAATTTTGATATCGTATATT
TTATAGATATTTGTTGTTGTTTTTTTATCCTGTTTTTATTACCACAATTG
ATATTCTATCATCATTTTATATACCAATCCAAAATAATCTTTAAAAAAAA
CTGTAAATTTATGCTCAGTCAATCATCTAGATTTATAAGAGAAAATATAC
ATACATCTGTAAAGGAAAAATATAAATGAAAATTCATTTATCATTTTTCC
CTTTCAAAGTTACTAGGAATTTTAAATATAAATTTTTTGAATTTTTCTAT
AATATGAGATTTATTTAGCACAGGCTGCGTATGGATATATTTTTCAAGCT
CCTTTTTTTAATTCTAGCATTTGAAAAACATTAATTTTCGTACAACAATG
TTTTTATGAACAACTAATTTTTATAAACTTTAAATTCTATTTTTCAGTAA
ATAACGAAAATATTACAATTAAACTAAAAATAACTATGCTTATTACTTGT
TCATTATTGTTTCATTGTTTTGTTGTTTTGTTTGGGGTATCAAAAGATTA
ATGAATTTGAAAGATGCATGAGAGTTACAAAGTTACTTTTATGGTCGTAT
CCATCCTTAGGATAAACCGGAATTCAGTCATTGTTTCAATGCTGTCAGAA
GTTTCACGAATATTATTTTCTTTACACAAAAGAAAGAATTTGTAAAATGA
AGGGTTGAAACAGGTTGAAAAAGCTCTGCCTAATTGTCACTTCTTCTCGC
AAATTCTCAAATCTAAGTGTCCCTTGATAATATTCAACAGTAATAATCTT
TTATTATTCTATTAGACAAAAAGTGGAAAATACGAAAAAATAAAATGAAA
AAGTAAATAACATAATACTATCAGCTGCTTCCAATATATAATCCTGAACT
GTCACTAGGGCTGGTGTGGACGTTGGACAAGAGTTGGAATGTTGCGTTTG
TTTGGATCAATTAGTAAAACCAAAGCTTTTGAATTGTATGCACACTTTAT
GTGAGGGATGCATCGACAAACTCATTCAGAGTGGAACTGTTAAATGCCCT
GAATGTCGAGAAGAAACCAAGGTTTGTTTCAATATTTTAGTGATCTTACT
GAATGTTACTTTTACTATAAGATCAATAATAAAAACATCGTAAAACATCA
CTGGTGTCTGTGATGATACAGTGCAGTCAGAACAATGCACCTATCAAGCT
TAAACAGCAAGGTCATGAGGAGGACTGGTAACAAATTTACAGAAAATTAT
TTTTCAACACGTGCTTTTCCAAGCGATATGTTCAAACGAAAGCAGCTCAG
AAGCTTATCCTAGCCAAAATTCTATTCCCGTTGAGGGAATCTCTATGGTG
GAGCCCAAACAATTTCTAGCCTATTCATGCGTTTGAACTGAGCCATTCGC
CTATAGATTGACGTAAAACAGATGATATATTTATAAGAGATGTGTGTCGT
CGGCGCTTTTTTCTAGCTCTCTATTTAAGCGATTGAAACAACAACATTAG
ATAAATGGAAATATTAAAAAAAATTGCTTCTAGACTGGACAATTAGTATA
TCACTAAAGATTAGTACTCTTACTATACTACTTTAACTTTACATTTTTCA
CCATTCTCCTCTCAAGCTTGCCCTGCGCCGCTTAAAGGTTTATAGGTGTA
TATAGATTACTTATCTATGTTATAGGTCCCTAATGGTGCATTCGAGCTAT
CTACCAATTATATTGCACAAAATATTATCGACAAAGTGAAAAATGCTGCA
AAGAAAGGCCCATTTTGTCAAGATTGTGTCGCCGAGTCTCCTGCTTCAAA
CCATTGCGAAACTTGTGTTTTGAGTTTATGTAAAAAATGCACTGAATATC
ATCAGAGTTGTGTTCGCTTTGTTGGTCATAAAATTATTGACATACAAAAT
GTCACAAAGAAAATGTGTAGTCCGAAGCGTTACTGCCCGAAACATAACGA
GCTGTTGAAATATTTTTGTGAGCAATGCAAGGTGGTTGTTTGTACTGATT
GTATGGTCAGTGTAGAGCACAAACAACATAACATCTCCTTGGTGTCAGAA
ACTACTGCCAAAGCTAAAGAGGAATTGAAGCAAAAACTTGAAAAGATGAA
AGACAAGAAGCAAACAATGGATGATTGTCTCCAACAAGCAAAGGTTTTTT
ATAAAGATGTTATAGATGAAGATAAAGTGAACGTTGAATTAATCAAGAAA
ACGTTTAACGAAGTGCGAAATATTCTCGCTGAAAAGGAAGAGCAGCTCAT
TGCTCAGGTTCAAGCCCAAAGCATGTTAAAAGGTGAAAATCTTGATAAAT
TCTCAAAGGCTGTTCATGCAGTCACTCAGACAGTAAATTATATGGAATCT
GTCGTGAA

Coding sequence (CDS) from alignment at scaffold_309:64625..68832-

>TCONS_00058268 ID=TCONS_00058268|Name=TCONS_00058268|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at scaffold_309:64625..68832- (Clytia hemisphaerica)
ATGTGTAGTCCGAAGCGTTACTGCCCGAAACATAACGAGCTGTTGAAATA
TTTTTGTGAGCAATGCAAGGTGGTTGTTTGTACTGATTGTATGGTCAGTG
TAGAGCACAAACAACATAACATCTCCTTGGTGTCAGAAACTACTGCCAAA
GCTAAAGAGGAATTGAAGCAAAAACTTGAAAAGATGAAAGACAAGAAGCA
AACAATGGATGATTGTCTCCAACAAGCAAAGGTTTTTTATAAAGATGTTA
TAGATGAAGATAAAGTGAACGTTGAATTAATCAAGAAAACGTTTAACGAA
GTGCGAAATATTCTCGCTGAAAAGGAAGAGCAGCTCATTGCTCAGGTTCA
AGCCCAAAGCATGTTAAAAGGTGAAAATCTTGATAAATTCTCAAAGGCTG
TTCATGCAGTCACTCAGACAGTAAATTATATGGAATCTGTCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036705XLOC_036705Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058268-exon-scaffold_309-1575043694:68553..68832TCONS_00058268-exon-scaffold_309-1575043694:68553..68832Clytia hemisphaericaexon
TCONS_00058268-exon-scaffold_309-1575043694:67859..68074TCONS_00058268-exon-scaffold_309-1575043694:67859..68074Clytia hemisphaericaexon
TCONS_00058268-exon-scaffold_309-1575043694:64625..65091TCONS_00058268-exon-scaffold_309-1575043694:64625..65091Clytia hemisphaericaexon
TCONS_00058268-exon-scaffold_309-1510915933:68553..68832TCONS_00058268-exon-scaffold_309-1510915933:68553..68832Clytia hemisphaericaexon
TCONS_00058268-exon-scaffold_309-1510915933:67859..68074TCONS_00058268-exon-scaffold_309-1510915933:67859..68074Clytia hemisphaericaexon
TCONS_00058268-exon-scaffold_309-1510915933:64625..65091TCONS_00058268-exon-scaffold_309-1510915933:64625..65091Clytia hemisphaericaexon
TCONS_00058268-exon-scaffold_309-1491911889:68553..68832TCONS_00058268-exon-scaffold_309-1491911889:68553..68832Clytia hemisphaericaexon
TCONS_00058268-exon-scaffold_309-1491911889:67859..68074TCONS_00058268-exon-scaffold_309-1491911889:67859..68074Clytia hemisphaericaexon
TCONS_00058268-exon-scaffold_309-1491911889:64625..65091TCONS_00058268-exon-scaffold_309-1491911889:64625..65091Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058268-proteinTCONS_00058268-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:64625..68832 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.622998	0.44558	0.264502	0.604212	0.584818	0.53634	0	0	0.191035	0.495454	0	0.175377	0.173001	0.433652	1.69413	1.04216	1.64848	0.51807	1.26759	0.221802	0.988673	1.02086	0.797893	1.67417	0.460173	0	0.249612	0	0.34662	0.295001
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000315Znf_B-box
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00058268 vs. Swiss-Prot (Human)
Match: TRI56 (E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens GN=TRIM56 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 3.363e-19
Identity = 50/176 (28.41%), Postives = 81/176 (46.02%), Query Frame = 2 
Query:  143 LECCVCLEQFVKPKLLNCMHTLCEGCIDKLIQSGTVKYPEC*EETKV-PNGASELSTNYIAQNIIEKVKNAA----KKG-------PFCQDCVVQFPASNHCETCVLNLCKKCTEYHESCVRFVSHKIIDIQNVTKKMCSPKRY------CPKH-NELLKYFCEQCKVVVCTDCMV 613
            L C +CLEQ   PK L C+HT C+ C+ +L   G V+ PEC E   V P G +   TN+    +++ VK  A    + G       P         PA+  C  C  +LC+ C + H    +  +H+++D+          +        CP+H  E L++ C+ C  ++C +C +
Sbjct:   19 LACKICLEQLRAPKTLPCLHTYCQDCLAQLADGGRVRCPECRETVPVPPEGVASFKTNFFVNGLLDLVKARACGDLRAGKPACALCPLVGGTSTGGPATARCLDCADDLCQACADGHRCTRQTHTHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEALRFLCQPCSQLLCRECRL 194
The following BLAST results are available for this feature:
BLAST of TCONS_00058268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRI563.363e-1928.41E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens... [more]
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