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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058213 ID=TCONS_00058213|Name=TCONS_00058213|organism=Clytia hemisphaerica|type=transcript|length=161bp
aaaatattgaaacaaaCCTTGGTTTCTTCTCGACATTCAGGGTATTTCAC
AGTTCCACTCTGAATCAGTTTGTCGATACATCCCTCACATAAAGTGTGCA
TACAATTCAAAAGCTTTGGTTTTACAAATTGTTCCAAACAAACACAACAT
TCCAACTCTTG Run BLAST on NCBI transcript from alignment at scaffold_309:65895..71283+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058213 ID=TCONS_00058213|Name=TCONS_00058213|organism=Clytia hemisphaerica|type=transcript|length=5389bp|location=Sequence derived from alignment at scaffold_309:65895..71283+ (Clytia hemisphaerica)
aaaatattgaaacaaaCCTTGGTTTCTTCTCGACATTCAGGGCATTTAAC
AGTTCCACTCTGAATGAGTTTGTCGATGCATCCCTCACATAAAGTGTGCA
TACAATTCAAAAGCTTTGGTTTTACTAATTGATCCAAACAAACGCAACAT
TCCAACTCTTGTCCAACGTCCACACCAGCCCTAGTGACAGTTCAGGATTA
TATATTGGAAGCAGCTGATAGTATTATgttatttactttttcattttatt
ttttcgtaTTTTCCACTTTTTGTCTAATAGAATAATAAAAGATTATTACT
GTTGAATATTATCAAGGGACACTTAGATTTGAGAATTTGCGAGAAGAAGT
GACAATTAGGCAGAGCTTTTTCAACCTGTTTCAACCCTTCATTTTACAAA
TTCTTTCTTTTGTGTAAAGAAAATAATATTCGTGAAACTTCTGACAGCAT
TGAAACAATGACTGAATTCCGGTTTATCCTAAGGATGGATACGACCATAA
AAGTAACTTTGTAACTCTCATGCATCTTTCAAATTCATTAATCTTTTGAT
ACCccaaacaaaacaacaaaacaatgaaacaatAATGAACAAGTAATAAG
CATAGTTATTTTTAGTTTAATTgtaatattttcgttatttacTGAAAAAT
AGAATTTAAAGTTTATAAAAATTAGTTGTTCATAAAAACATTGTTGTAcg
aaaattaatgtttttcaaatgctagaattaaaaaaaggagCTTGAAAAAT
ATATCCATACGCAGCCTGTGCTAAATAAATCTCAtattatagaaaaattc
aaaaaatttatatttaaaattCCTAGTAACTTTGAAAGGGAAAAATGATA
AATgaattttcatttatatttttcctTTACAGATGTATGTATATTTTCTC
TTATAAATCTAGATGATTGACTGAGCATAAAtttacagttttttttaaag
attattttggATTGGTATATAAAATGATGATAGAATATCAATTGTGGTAA
TAAAAACaggataaaaaaacaacaacaaatatcTATAAAATATACGATAT
CAAAATTCTATAAAACAAAGAACCATAAGTATTCAAAATATAACTGGTAT
ATGATTGTGTATGTATGTACCTCTCATTGTTTTAGTTACTATATTTTGTT
TATAATTATCATCCAATACCGGTTATAAAAATTATTATGATAATGACAAG
GCTCTTATTTGCTCAGATATCAATGTATTCCTGCTAAGATTGTGTGAATA
CTTTTCGAAGCTCATATCAAAGCCCAGCGAGCTTCCTGAGTCAGCATTTT
TATGATGCAGTGTTAATATTGCATTATTCTTGAGGTTCAGAAGTGTCGGT
TTCGTTGTTTTTCCTTTCGATGGCAAATATAAAGGTGTAGAAGATACAAT
AAATGTACCATTCAAACTGTATTCCTTGCGGATTTCATCTAATTGTTTCG
TGAGATCACATATGATATCTAGATCATCACAATCTTCATTCAGGATAGAT
TCAACATATTGCACCGATTGGGAAACTTTGCTGATTGCTGTTGAAAATCT
GTCAAATTTAAGCTTCTCCTTTTTGTCTACTCTAATTGTTGCAAGCTGTT
TTACCAATTCTTCTTCCTTCTTGGCAAGAACAACTCTTATTTCATCAAAA
GCTTGTTTGATCATATTACCATTGTTTTCCTCTTCTGCAGCAACTTTTTG
GTGAAATTCTCTGACTTCCCCAAGACAGTCAACCATTGTTAACTCACTCT
CTCTCATCTTTTTGAGCATTTGATTTAATTCTTCTTTGGCTTTGTCTATA
GCTTCCGACACCAATGTAATATCATGATGTTTATGTTGTGCACTTATCAT
ACAACAATCATTACATACGACAACCTTGCATTGCTggcaaaaatatttca
acagcTCGTTGTGTTTCGGACAATAACGTTTCGTACTAGAAATCTTCTTA
GATACGTTTTGTATGTCAATAATTTTATGACTTACAAACCTCACACAACT
CTCATGATATTCAGTGCACTTTTTACACAAATTCAAAACACAAGTTTCGC
AATGGTTTGAAGCAGGAAACTGGACGACACAATCTTGACAGAAAGGGCCT
TTCTTTGCAGCATTTTTCACTTTCTCGATAATATTTTGTGCAATATAATT
GGTAGATAGCTCAGATGCACCATTTGGGACCTATAACATAGATAAGTAAT
CTATAAACATTTAAGCAACGCTGCAAGCTTGAGAGGAGACTGGTGAAAGT
GATAAGTTAAAATAGTATAGTAAGAGTATTGATCTTTAGTGATTCAATAA
TAATCCAGTCTAGAAGCAATTTTCCTACTGTAATAATTCTATTTAACTCT
ATTGTTGTTATTTCAATCGCTAAAGCTAAAAAAAGAGCCGACGACACCTT
CTATATGTGCACATCTTTTATTTAATTATATCGTCTTTGTTATGTCAATC
TATAGGCAAATGGCTAATTTAACTGCAGGAACAGGCTAGAAATGGTTTAC
TCTCCACCGAAGAGACTCTCAACCAAAATAGAGTTTTTTCAGTCTCCTCA
AAATCGACGGTGCTGTTACGGGACATTACTTACACCAGTTATGCATTATG
ATCCAACTCATAGAGGTGCTAAAGTAATCAGTAAAATCAGCAAAATATTA
AAACGAACCTTAGTTTCTTCTCAACATTCAGGGTATTTCACAGTTCCACT
CTGAATCAGTTTGTCGATACATCCCTCACATAAAGTGTGCATACAATTCA
AAAGCTTTGGTTTTACAAATTGTTCCAAACATACACAACATTCCAACTCT
TGTCCAACTTCCACACCAGCCATTCTAGTGGGTACAATCTCGTGTACTGG
CAGTTCAAGGGTATTTATTGGAAACAACTGACAACATTCgttaatttatt
tgtttttatcatGTATTTTCGTATCTTTCCACTTTTTTATCTCAAATAAT
ATAAAAGATTATTACTGTTGACTATTATCAAAGGAAACTTAGATTTGAGA
ATTTGCCAGAATTAATGATGATTCTTTATAGCTTTTTTGGCCCTCATTTC
ACCAATGTCCTCTTTTTTGGTAAAGAAAATATACATGAAATTTCTTATAT
CATTGAAACAACGAGTTTTGATACGACCAACTCCAAATTCATTATTCTTA
GCACTTAGGAAAATAACTCCCCCACCCAATGACAAAATATGCATAACACT
GACAAAATATGTACGGCATTGATATTATGGCATCATTAATTATGTCAATA
TCGATTCAATGCCCATTAAAGAAAATAGCACTTctaaatagttcttttta
tcggcaatccaaaaaatatctgcaatctgattggttaaaaagagtacaat
atatatcttgtatttaacatgtacaaaatataaattggcaaaaagatgtt
gttgcattgtagcagtagcagcaatctaacgcttttttccaacacaaaaa
gtgcactTTTTGGGTCatcgataaaccagttatcagacatttgctcgtac
aatatggaaatatttcactcgttccagattttccgtatattttccttgcc
taaaaggctcggaaaatacgGTAACGGagaaatctcggaactcgtaaaat
atttctcgtattgtaCTCCcgactgtccgataactattacttatcgTGAA
ATGTTGAAATATGAGCAAAagagaatcaaatttaatatttgtttcctatc
tagattatttTAGCGCTAGAATAtggtaaattttcatgaaaatattttgc
aatggcggtacgcccaatcacgtctacgggaaagttccaatttctAATTA
TTGGGAAATCAGGGAAAGCGGTTCACCATATGGATAAAAAACgaacggaa
tgaaacctgacaaaaGGTCAAttttcagagcatgtcatgGCTGCCCCCTA
AGGAAAATTATACCATTGAAATCCTGCCCTTAAACTTTGTGTACCCACCC
AGAAAGGCTgttaaaaaaaacagaaaaagtaacaaaattggccaattttc
agTGACTTTGCCCCTGAGAccagaaaattataaaaaaattacccctgccC
TTGAAACTGATACACACTCTGCCCCTGAGATCTTGATGATTTCTGCCATA
CTATGCAAACTGGACAAAACGTTTTCAACTAATTTATTCAGATATATAAA
AGCTAggtataagaggttcattatttgtggattttaaaacctacagaAGC
AAAAGCGAAAGTTGTTAGGGGAAGGAAAGTAAACACAAGACAGAAGGGTT
GGTTGTGTTGAttaggtatgtttttattctatccaaaCACTAATGTTAAT
AAAGGCCAAGGAAGCTAGACAGAGTGACAGAGTGTTGTTTGtgattgaat
aaaataaaacaatctaaatattttccagggggtgaatTTTTAGTTTCTCT
TCTGCGAACATGAAGTCGCCAATCCGGGGAGTCTTCATTTATATACCATA
GAAAAGCTCATGAAACTCGCTATGCTAACTTAATTTTGAGTTAAGCAAAT
CGCCAAGGCCAAGATTGCCAAACAATCATTTTTTCCCTATGggttttctc
ttttctcttttattgGCTTCCTTTGTTGATTTCTTGCTTCATCAATGACT
CAcacattatttcttaaaatggAAAACATGCTATTTCCCAAGCTAATAAA
AAGGGCCGTTCCAGAAAATTTCTGTTACCCCCGTTGGACGCcgtgcattt
aaaaaatttttctcacctctgagatattttttttcttctattcttttcta
ttatggttgagttacaggaggctaTGGGAGCCCATTCtagcaactataga
tgctttgagtaagcatcccgtcagcaccttgaactaactacccaattccc
ctcacatggcatgggttgacccgggcgaaggtttgttcacttgcaAAGTC
aaccgttgtgagtgggaatcgaaccttatGGTCGTACAGGAAtccactat
accacaacgcTACATATCACCTCTTCCAGTGGTGGTCTGAAATTTggatg
aaaatccatgtactttcgCAAAATGtgtcggaaattccactcttttttgc
ctttttcaattcaattgcAGTGggaattcatacattttcttctctcgcct
tggaaattttgaattttggtgaaaacttttgcccttggaaatcctgtgtc
gtcccccccctgttacagacaaattctggaatggcccaaagaaagtgaaa
gtaagaTATCTATCTAGCTACCTTGCTGCCTTGCCTTGATTGGATGGATA
ATTCTCGACATTTGGGACATTTCACCACAGATCCGTTTTGAATCATCCGT
TTGTCAACACATTAAGTGTGCATATAACAAATATTCAAAAGCTTTGGTCT
TACAAATTGATCCAAACAAACACAACATTCCAACTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058213-exon-scaffold_309-1491911889:65895..65928 | TCONS_00058213-exon-scaffold_309-1491911889:65895..65928 | Clytia hemisphaerica | exon |
| TCONS_00058213-exon-scaffold_309-1510915933:65895..65928 | TCONS_00058213-exon-scaffold_309-1510915933:65895..65928 | Clytia hemisphaerica | exon |
| TCONS_00058213-exon-scaffold_309-1575043694:65895..65928 | TCONS_00058213-exon-scaffold_309-1575043694:65895..65928 | Clytia hemisphaerica | exon |
| TCONS_00058213-exon-scaffold_309-1491911889:68570..68674 | TCONS_00058213-exon-scaffold_309-1491911889:68570..68674 | Clytia hemisphaerica | exon |
| TCONS_00058213-exon-scaffold_309-1510915933:68570..68674 | TCONS_00058213-exon-scaffold_309-1510915933:68570..68674 | Clytia hemisphaerica | exon |
| TCONS_00058213-exon-scaffold_309-1575043694:68570..68674 | TCONS_00058213-exon-scaffold_309-1575043694:68570..68674 | Clytia hemisphaerica | exon |
| TCONS_00058213-exon-scaffold_309-1491911889:71262..71283 | TCONS_00058213-exon-scaffold_309-1491911889:71262..71283 | Clytia hemisphaerica | exon |
| TCONS_00058213-exon-scaffold_309-1510915933:71262..71283 | TCONS_00058213-exon-scaffold_309-1510915933:71262..71283 | Clytia hemisphaerica | exon |
| TCONS_00058213-exon-scaffold_309-1575043694:71262..71283 | TCONS_00058213-exon-scaffold_309-1575043694:71262..71283 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:65895..71283 + |
Blast
The following BLAST results are available for this feature:
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