TCONS_00058330 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058330
Unique NameTCONS_00058330
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length739

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058330 ID=TCONS_00058330|Name=TCONS_00058330|organism=Clytia hemisphaerica|type=transcript|length=739bp
CCGTAAGAAAGGAGCCAACATTGAGTTAAGTATGGATGTAGTGACAAAGC
CTGGAGTTGGATCGACAAATAATGAAGAAAGATTTACGTTTCAGGTTAAG
TATAATTCTGATAAAACGCTGGGGAGTTACCAAGCTGAACTTGTAGCGCA
TAATCGAATATCGAAATACGGTGGCTATAAAGTTTGTAGTGATACCGAAG
AAAAAGATCTAAGCATATGTATATGCAATCTTGGCAAAAACGGTAAAAGA
TTAAAATCATCTCcgaaattattaaaaatgttAGATTTGTATCCAGTTCG
GACTGACTATATCTACCGTATCCAAAACGATAAATTCTTTTTGAGAGAGG
AGATCACACATATTGATGAAAACCATATTGGACTGTTGAGACGAATCGTT
TAcgaaaataaaaaggaaaagacGGGGGTTTTAAATGATCACCGATCAAC
GACGTTTGAGTTGATCAATTACTCTTCGGATAGAACTTACGATGTGAAAA
TTGTTTTCAccgattttgaaaatatgaaaccGATGAATGATGGAGAATGT
AAAGGGATAGCCAGACCAAACTCCATGCGTTATTTGTGTACCATTGCACT
ATCAAGATTGTCTGGTAACGGTGGTCTTAAATATGAGGTTgaatttacat
taatttaagtgtTATTTATTCATCGCAGGAGGTGCTCGTAGATATTATTC
TTATCaaggattttttaattttaaactaAGTTTTTAGGT
Run BLAST on NCBI

protein sequence of TCONS_00058330-protein

>TCONS_00058330-protein ID=TCONS_00058330-protein|Name=TCONS_00058330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
RKKGANIELSMDVVTKPGVGSTNNEERFTFQVKYNSDKTLGSYQAELVAH
NRISKYGGYKVCSDTEEKDLSICICNLGKNGKRLKSSPKLLKMLDLYPVR
TDYIYRIQNDKFFLREEITHIDENHIGLLRRIVYENKKEKTGVLNDHRST
TFELINYSSDRTYDVKIVFTDFENMKPMNDGECKGIARPNSMRYLCTIAL
SRLSGNGGLKYEVEFTLI
Run BLAST on NCBI

transcript from alignment at scaffold_309:127348..128086

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058330 ID=TCONS_00058330|Name=TCONS_00058330|organism=Clytia hemisphaerica|type=transcript|length=739bp|location=Sequence derived from alignment at scaffold_309:127348..128086 (Clytia hemisphaerica)
ACCTAAAAACTtagtttaaaattaaaaaatccttGATAAGAATAATATCT
ACGAGCACCTCCTGCGATGAATAAATAacacttaaattaatgtaaattcA
ACCTCATATTTAAGACCACCGTTACCAGACAATCTTGATAGTGCAATGGT
ACACAAATAACGCATGGAGTTTGGTCTGGCTATCCCTTTACATTCTCCAT
CATTCATCggtttcatattttcaaaatcggTGAAAACAATTTTCACATCG
TAAGTTCTATCCGAAGAGTAATTGATCAACTCAAACGTCGTTGATCGGTG
ATCATTTAAAACCCCCgtcttttcctttttattttcgTAAACGATTCGTC
TCAACAGTCCAATATGGTTTTCATCAATATGTGTGATCTCCTCTCTCAAA
AAGAATTTATCGTTTTGGATACGGTAGATATAGTCAGTCCGAACTGGATA
CAAATCTaacatttttaataatttcgGAGATGATTTTAATCTTTTACCGT
TTTTGCCAAGATTGCATATACATATGCTTAGATCTTTTTCTTCGGTATCA
CTACAAACTTTATAGCCACCGTATTTCGATATTCGATTATGCGCTACAAG
TTCAGCTTGGTAACTCCCCAGCGTTTTATCAGAATTATACTTAACCTGAA
ACGTAAATCTTTCTTCATTATTTGTCGATCCAACTCCAGGCTTTGTCACT
ACATCCATACTTAACTCAATGTTGGCTCCTTTCTTACGG

Coding sequence (CDS) from alignment at scaffold_309:127348..128086

>TCONS_00058330 ID=TCONS_00058330|Name=TCONS_00058330|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_309:127348..128086 (Clytia hemisphaerica)
ttaaattaatgtaaattcAACCTCATATTTAAGACCACCGTTACCAGACA
ATCTTGATAGTGCAATGGTACACAAATAACGCATGGAGTTTGGTCTGGCT
ATCCCTTTACATTCTCCATCATTCATCggtttcatattttcaaaatcggT
GAAAACAATTTTCACATCGTAAGTTCTATCCGAAGAGTAATTGATCAACT
CAAACGTCGTTGATCGGTGATCATTTAAAACCCCCgtcttttccttttta
ttttcgTAAACGATTCGTCTCAACAGTCCAATATGGTTTTCATCAATATG
TGTGATCTCCTCTCTCAAAAAGAATTTATCGTTTTGGATACGGTAGATAT
AGTCAGTCCGAACTGGATACAAATCTaacatttttaataatttcgGAGAT
GATTTTAATCTTTTACCGTTTTTGCCAAGATTGCATATACATATGCTTAG
ATCTTTTTCTTCGGTATCACTACAAACTTTATAGCCACCGTATTTCGATA
TTCGATTATGCGCTACAAGTTCAGCTTGGTAACTCCCCAGCGTTTTATCA
GAATTATACTTAACCTGAAACGTAAATCTTTCTTCATTATTTGTCGATCC
AACTCCAGGCTTTGTCACTACATCCATACTTAACTCAATGTTGGCTCCTT
TCTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036739XLOC_036739Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058330-proteinTCONS_00058330-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058330-exon-scaffold_309-1491911889:127348..128086TCONS_00058330-exon-scaffold_309-1491911889:127348..128086Clytia hemisphaericaexon
TCONS_00058330-exon-scaffold_309-1510915933:127348..128086TCONS_00058330-exon-scaffold_309-1510915933:127348..128086Clytia hemisphaericaexon
TCONS_00058330-exon-scaffold_309-1575043694:127348..128086TCONS_00058330-exon-scaffold_309-1575043694:127348..128086Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:127348..128086 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.267757	0	0.102423	0	0	0	0.943143	0.964403	0.751362	0.716342	0.901948	0.362354	0.476332	0.519992	0.218794	0.0815816	0	0.103011	0.491792	0.609313	0	0	0.0955494	0.115821	0.233419	0.745536	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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