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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058333 ID=TCONS_00058333|Name=TCONS_00058333|organism=Clytia hemisphaerica|type=transcript|length=862bp
TAAAGACATCGATTCATTGAAAATATCCGGCAAATTTCGTCCTCTGTATG
CTATTATAAAAATAGCCACCTGTAAAAGACCTGCGAATGCCAGCTGAACG
GTTTTGGGGAGGATATTTCTACAGAAAAGATATATGATTTGAGTTTGAGT
ATTTCTTTCAGATTGAACATCTATTTTTTGTGTTTCCATGGCAATcaaag
tcaaaacaaaagatGAACCAGTCAGAATAAAAATGGTAAACCATTGCTGG
AGAACAGTGTTTCGCTTGCTTTTTGTTGATAATTTGTGCATCGTATTAAA
AGCTTTCAAGATTTTATGAGACTTCATAAGAACGATCGCCATGAAAATTG
TGTATAAATTACCAGCTATAATGGCGTCCAAGTAGCAAGTCCATCCTCTT
GGTTTAATATGACGTAATATTATGAAATCTATATTGATGGATATTGAAGT
AAACAAGTGAATCACAGTCAATAAGAAATCAGAGCTTTTGACAATGGGGG
TACCGTTATATACCACGAAAGTTATTGAAGCAAAAATACCAAATATAATA
CCAAAGCTGCTCAAAACAAAGGCTGTAAAGTGAATTGTATCTTTGACTAG
AAATTGTTCATTGTATGGGTCATAACATCTCGTATGATTACCGTTGGAAA
GGTAATAGCGAGAACATTGTTGGCACTTTTCTACATTTCCTTCCGTTTGT
TTAATGAAGTTTTTTTGACATTGTTTACAAGTGAAACCATATTCGAAATT
CCATTTTGTGAATTGTTTTAAAAGCTTTCCTCTACTTATTTCCCAACCTG
GCTGACACTGATAGGCTTCGCACGTAGATATTTCTGGAAGAGTTTGTAAT
TTGACACTAAAT Run BLAST on NCBI protein sequence of TCONS_00058333-protein >TCONS_00058333-protein ID=TCONS_00058333-protein|Name=TCONS_00058333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
FSVKLQTLPEISTCEAYQCQPGWEISRGKLLKQFTKWNFEYGFTCKQCQK
NFIKQTEGNVEKCQQCSRYYLSNGNHTRCYDPYNEQFLVKDTIHFTAFVL
SSFGIIFGIFASITFVVYNGTPIVKSSDFLLTVIHLFTSISINIDFIILR
HIKPRGWTCYLDAIIAGNLYTIFMAIVLMKSHKILKAFNTMHKLSTKSKR
NTVLQQWFTIFILTGSSFVLTLIAMETQKIDVQSERNTQTQIIYLFCRNI
LPKTVQLAFAGLLQVAIFIIAYRGRNLPDIFNESMSL Run BLAST on NCBI transcript from alignment at scaffold_309:170996..171857 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058333 ID=TCONS_00058333|Name=TCONS_00058333|organism=Clytia hemisphaerica|type=transcript|length=862bp|location=Sequence derived from alignment at scaffold_309:170996..171857 (Clytia hemisphaerica)
ATTTAGTGTCAAATTACAAACTCTTCCAGAAATATCTACGTGCGAAGCCT
ATCAGTGTCAGCCAGGTTGGGAAATAAGTAGAGGAAAGCTTTTAAAACAA
TTCACAAAATGGAATTTCGAATATGGTTTCACTTGTAAACAATGTCAAAA
AAACTTCATTAAACAAACGGAAGGAAATGTAGAAAAGTGCCAACAATGTT
CTCGCTATTACCTTTCCAACGGTAATCATACGAGATGTTATGACCCATAC
AATGAACAATTTCTAGTCAAAGATACAATTCACTTTACAGCCTTTGTTTT
GAGCAGCTTTGGTATTATATTTGGTATTTTTGCTTCAATAACTTTCGTGG
TATATAACGGTACCCCCATTGTCAAAAGCTCTGATTTCTTATTGACTGTG
ATTCACTTGTTTACTTCAATATCCATCAATATAGATTTCATAATATTACG
TCATATTAAACCAAGAGGATGGACTTGCTACTTGGACGCCATTATAGCTG
GTAATTTATACACAATTTTCATGGCGATCGTTCTTATGAAGTCTCATAAA
ATCTTGAAAGCTTTTAATACGATGCACAAATTATCAACAAAAAGCAAGCG
AAACACTGTTCTCCAGCAATGGTTTACCATTTTTATTCTGACTGGTTCat
cttttgttttgactttgATTGCCATGGAAACACAAAAAATAGATGTTCAA
TCTGAAAGAAATACTCAAACTCAAATCATATATCTTTTCTGTAGAAATAT
CCTCCCCAAAACCGTTCAGCTGGCATTCGCAGGTCTTTTACAGGTGGCTA
TTTTTATAATAGCATACAGAGGACGAAATTTGCCGGATATTTTCAATGAA
TCGATGTCTTTA Coding sequence (CDS) from alignment at scaffold_309:170996..171857 >TCONS_00058333 ID=TCONS_00058333|Name=TCONS_00058333|organism=Clytia hemisphaerica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_309:170996..171857 (Clytia hemisphaerica)
TTTAGTGTCAAATTACAAACTCTTCCAGAAATATCTACGTGCGAAGCCTA
TCAGTGTCAGCCAGGTTGGGAAATAAGTAGAGGAAAGCTTTTAAAACAAT
TCACAAAATGGAATTTCGAATATGGTTTCACTTGTAAACAATGTCAAAAA
AACTTCATTAAACAAACGGAAGGAAATGTAGAAAAGTGCCAACAATGTTC
TCGCTATTACCTTTCCAACGGTAATCATACGAGATGTTATGACCCATACA
ATGAACAATTTCTAGTCAAAGATACAATTCACTTTACAGCCTTTGTTTTG
AGCAGCTTTGGTATTATATTTGGTATTTTTGCTTCAATAACTTTCGTGGT
ATATAACGGTACCCCCATTGTCAAAAGCTCTGATTTCTTATTGACTGTGA
TTCACTTGTTTACTTCAATATCCATCAATATAGATTTCATAATATTACGT
CATATTAAACCAAGAGGATGGACTTGCTACTTGGACGCCATTATAGCTGG
TAATTTATACACAATTTTCATGGCGATCGTTCTTATGAAGTCTCATAAAA
TCTTGAAAGCTTTTAATACGATGCACAAATTATCAACAAAAAGCAAGCGA
AACACTGTTCTCCAGCAATGGTTTACCATTTTTATTCTGACTGGTTCatc
ttttgttttgactttgATTGCCATGGAAACACAAAAAATAGATGTTCAAT
CTGAAAGAAATACTCAAACTCAAATCATATATCTTTTCTGTAGAAATATC
CTCCCCAAAACCGTTCAGCTGGCATTCGCAGGTCTTTTACAGGTGGCTAT
TTTTATAATAGCATACAGAGGACGAAATTTGCCGGATATTTTCAATGAAT
CGATGTCTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058333-exon-scaffold_309-1491911889:170996..171857 | TCONS_00058333-exon-scaffold_309-1491911889:170996..171857 | Clytia hemisphaerica | exon |
| TCONS_00058333-exon-scaffold_309-1510915933:170996..171857 | TCONS_00058333-exon-scaffold_309-1510915933:170996..171857 | Clytia hemisphaerica | exon |
| TCONS_00058333-exon-scaffold_309-1575043694:170996..171857 | TCONS_00058333-exon-scaffold_309-1575043694:170996..171857 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:170996..171857 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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