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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058278 ID=TCONS_00058278|Name=TCONS_00058278|organism=Clytia hemisphaerica|type=transcript|length=3067bpRun BLAST on NCBI transcript from alignment at scaffold_309:286633..309806- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058278 ID=TCONS_00058278|Name=TCONS_00058278|organism=Clytia hemisphaerica|type=transcript|length=23174bp|location=Sequence derived from alignment at scaffold_309:286633..309806- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058278 vs. Swiss-Prot (Human)
Match: GDE (Glycogen debranching enzyme OS=Homo sapiens GN=AGL PE=1 SV=3) HSP 1 Score: 745.347 bits (1923), Expect = 0.000e+0 Identity = 382/844 (45.26%), Postives = 536/844 (63.51%), Query Frame = 1
Query: 1 LNCARKVRPDLFVIAELFTGDEKTDNIFVNRLGINSMIRENMGAFSPHDLGRHIHRYGGPPTGSFMLPNKRPLKPSVAPALFMDITHDNESLIEKRSIFDFLPSCALVAAGSFATGSTRGYDDLVPHYIHVVEENRLYQTWCDQ---KSDGSIFLGEGLINARQTLNAIHTDMKANGFEEIFVDQMTNNVVAVTRHCPRNHQSIIIVGHCCFSRPAEDQYPKIGRKMHGDFPPLKIEGHLEEILFEGQILEKETIKEFVRHVDFINGNENVVVYSQKNIQLNSSNL------CTLQKTDRGSEILFRNFFPGSVIIFKVSGKLSARDSINCLRATINTL-PDFQDSNSKLLIDGGEGKNSITDVKEIVSKLSLVDLNKVLYRSSQEEGDDGFGGGVYNIPGHGDMVYCGLQGIMSVLCKVAENNDLGHPICSNLREGDWLLGYTANRLKHHERT-KPLGLWFENIFDHMSVLPRFLVPSYFEVILRGVHSLCIERSLSLLSRFVQDGATFTKHLSMASVQLCGEVKSARLPSVE--------KINQ-----KELTVTLAAGLPHFSTGFMRCWGRDTFIALRGLMLITGRFDVARTLILAYAGCVRHGLAPNLLASGTSARFNARDATWFWLQAVQEYCKMADEGVGLLDATVLRMYPTDDSEPLINNPKKEPLHQTIHEILTRHYNGISFKERNAGIQLDRDMSDQGFFVEVSVD-ELGFVRGGSEHNCGSWMDKMGGSEIAKNKGVPATPRCGSPVEIIGLCKSTLRWLVQLHGEGKYPHNTISFTSKQGDTKTVSYADWESKIQDNFDRNFFIGDDST-----FPN-IHKRNIYKDTLGTG 2439
L+ AR ++P+L+V+AELFTG E DN+FV RLGI+S+IRE M A++ H+ GR ++RYGG P GSF+ P RPL P++A ALFMDITHDNE I RS +D LPS +V+ A+GSTRGYD+LVPH I VV E R Y W + + G + G+I AR ++ +H ++ A GF +++VDQ+ ++VAVTRH P HQS++ V F P Y K + P + I G +EE++ E + +E+ T K + + + ING ++ V +++IQLN S + T + EI F N PGSVIIF+VS A+ ++ LR + P F+ + L +D + I + S+L+L +LN++LYR EE +DG GG Y+IP + Y GLQG+MSVL ++ NDLGHP C+NLR GDW++ Y +NRL T +G W + +F ++ +PR+L+P YF+ IL G ++ ++ + +S FVQ+G+TF KHLS+ SVQLCG K LP + ++N+ ++ V+LAAGLPHFS+G RCWGRDTFIALRG++LITGR+ AR +ILA+AG +RHGL PNLL G AR+N RDA W+WLQ +Q+YCKM G+ +L V RMYPTDDS PL +PL + I E + +H GI F+ERNAG Q+DR+M D+GF + VD E GFV GG+ NCG+WMDKMG S+ A+N+G+PATPR GS VEI+GL KS +RWL++L + +P++ ++ + G VSY +W KIQDNF++ F + +D + PN +HKR IYKD+ G
Sbjct: 540 LDAARNLQPNLYVVAELFTGSEDLDNVFVTRLGISSLIREAMSAYNSHEEGRLVYRYGGEPVGSFVQPCLRPLMPAIAHALFMDITHDNECPIVHRSAYDALPSTTIVSMACCASGSTRGYDELVPHQISVVSEERFYTKWNPEALPSNTGEVNFQSGIIAARCAISKLHQELGAKGFIQVYVDQVDEDIVAVTRHSPSIHQSVVAVSRTAFRNPKTSFYSK-------EVPQMCIPGKIEEVVLEARTIERNT-KPYRKDENSINGTPDITVEIREHIQLNESKIVKQAGVATKGPNEYIQEIEFENLSPGSVIIFRVSLDPHAQVAVGILRNHLTQFSPHFKSGS--LAVDNADPILKIP-FASLASRLTLAELNQILYRCESEEKEDG--GGCYDIPNWSALKYAGLQGLMSVLAEIRPKNDLGHPFCNNLRSGDWMIDYVSNRLISRSGTIAEVGKWLQAMFFYLKQIPRYLIPCYFDAILIGAYTTLLDTAWKQMSSFVQNGSTFVKHLSLGSVQLCGVGKFPSLPILSPALMDVPYRLNEITKEKEQCCVSLAAGLPHFSSGIFRCWGRDTFIALRGILLITGRYVEARNIILAFAGTLRHGLIPNLLGEGIYARYNCRDAVWWWLQCIQDYCKMVPNGLDILKCPVSRMYPTDDSAPLPAGTLDQPLFEVIQEAMQKHMQGIQFRERNAGPQIDRNMKDEGFNITAGVDEETGFVYGGNRFNCGTWMDKMGESDRARNRGIPATPRDGSAVEIVGLSKSAVRWLLELSKKNIFPYHEVT-VKRHGKAIKVSYDEWNRKIQDNFEKLFHVSEDPSDLNEKHPNLVHKRGIYKDSYGAS 1369 HSP 2 Score: 166.777 bits (421), Expect = 9.549e-42 Identity = 86/162 (53.09%), Postives = 104/162 (64.20%), Query Frame = 2
Query: 2384 QLSRTFTNGTFTKTL*APEMFNAQHAWKALESIERHLLGPLGLRTLDPDDWNYDGDYENHLDNADPKKAKGFNYHNGPEWVWVFGPFLRARLIMAERIDKTNLLPQTISKTRQVLSRHKREIETSPWKGLTELTNKDGAFCSHSCPTQAWSSACLLEVLYDL 2869
QL FT APE+F + AWKALE E+ LLGPLG++TLDPDD Y G Y+N LDN + AKGFNYH GPEW+W G FLRA+L + R+ +TI + VLSRH +E SPWKGL ELTN++ +C SC TQAWS A +LE LYDL
Sbjct: 1376 QLRPNFTIAMVV----APELFTTEKAWKALEIAEKKLLGPLGMKTLDPDDMVYCGIYDNALDNDNYNLAKGFNYHQGPEWLWPIGYFLRAKLYFS-RLMGPETTAKTIVLVKNVLSRHYVHLERSPWKGLPELTNENAQYCPFSCETQAWSIATILETLYDL 1532 The following BLAST results are available for this feature:
BLAST of TCONS_00058278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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