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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058341 ID=TCONS_00058341|Name=TCONS_00058341|organism=Clytia hemisphaerica|type=transcript|length=1509bp
GAGTTGGTTAAAGACTTGTCTTGTaaacaaaatattgtttttggaaATTG
GAGCTGATAGACACTATATAACTGGATAATGAACTTATTTACTGGTGCGT
CGTCCAAACATAATGTTATGTCAATATGGGTCATAACTATCCTTATACAA
CCGGTCGTCACGGTGAATAACACAAGTCGATCTAAGTCTCCAACAACTTT
TATATATCATGGTAGTGGTAACATTTCATCATCACTTCCTCATAATAGAA
GAAGATCAGGTTTGGCTTCAACAATTGTATCTCCAGGCAAAAATCAAATG
GAGAATTTGTCCCACAAGGCAGAGTGGTGGACTGGGAACGAAACAGCACC
AACTGCACATGTTGAGAACCTATTAGAGTATTGTTCTTTGTTCAAACAAC
CACTGGAAGACTGCAATTGCACTTGGTACAGAGCTCTCAAACCAAAAGGT
AATCTCAACTTTTGCCGAGACCAAGATCAACTGCTAACATGTACTTTAGC
CAGAAGGATCACAAACCGGGCAATAATCGGGATATCAACAATCGGGATTT
TCGGGAATCTACTTGTTTTGGTGGTTACCGGTTATCACCGTCACCGGATC
ACAGTTTGTCGCCGGATTATTGGAATGCTTGCGTTTTCTGACCTTCTTTT
CTCACTTGTTCAACTGGTGATTTATTTCCCTGCTTTTTGGACATGCCTTT
GGATTTATGAGACAATCATGTGTAAAATACTACGTTTCGCTGTCCATGCT
TTTTGTATGATATCTCTAGGTTTCGTCATGATTATTGCTTTCGAACGTTT
TAATGGCATTGTAAAGCCATTCCAAATTCGAGTGTCgaataagaaaattt
atttgacGACGATACTAAACATTGTATGGGCTATTACGTTTAGTATACCC
CTAATAATTCATTTAGATGTAATACACGGTGGAGAATGTACTAAAAATTG
GTCCGATCCTCATCAAGCTTTGATTTATGACATGGTTTTAGTGATCGGGA
CATTTTTGTTTCCTATAATTGTGACATCAGTATTATACATTTTGATCGTC
AAAAGTTTATATCAAGTTAAATCCGAAACGGGTTCAATAATCGGGAAACA
ACAGAAGCATCGCCGTCGTAGAGAAGATCGTCGGATTACCTCTATAATAG
CTTATCTTCTAGTCTCTTTTGTCATTCTCGTTGCACCGAACCGGTTACTC
AATCTTTTACACGGATATGGAGTTTTTGATGATCTAGCTCAGGAGACATA
CTCTTATTTACAGCTGGCAGCTATGCTACCGTACGCCATTCATGCCAGCA
TCAACCCTTTGATCTATTCAATCATTGATCGAAAGTTCCGTAAAAATGTT
CGAATGTTATTTTACAAAGTGACGAACCAAGAGAAGAAAGCATTTTCAAT
TGTAAATTCTGAGAAACATTTGCTTGGAGCACCTCATAATAGAGAATCGT
CAATCATATCTGATGTCTGatggatttttcaaaaacaattattgGCCAGT
TTAAGGAGG Run BLAST on NCBI protein sequence of TCONS_00058341-protein >TCONS_00058341-protein ID=TCONS_00058341-protein|Name=TCONS_00058341-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp
MNLFTGASSKHNVMSIWVITILIQPVVTVNNTSRSKSPTTFIYHGSGNIS
SSLPHNRRRSGLASTIVSPGKNQMENLSHKAEWWTGNETAPTAHVENLLE
YCSLFKQPLEDCNCTWYRALKPKGNLNFCRDQDQLLTCTLARRITNRAII
GISTIGIFGNLLVLVVTGYHRHRITVCRRIIGMLAFSDLLFSLVQLVIYF
PAFWTCLWIYETIMCKILRFAVHAFCMISLGFVMIIAFERFNGIVKPFQI
RVSNKKIYLTTILNIVWAITFSIPLIIHLDVIHGGECTKNWSDPHQALIY
DMVLVIGTFLFPIIVTSVLYILIVKSLYQVKSETGSIIGKQQKHRRRRED
RRITSIIAYLLVSFVILVAPNRLLNLLHGYGVFDDLAQETYSYLQLAAML
PYAIHASINPLIYSIIDRKFRKNVRMLFYKVTNQEKKAFSIVNSEKHLLG
APHNRESSIISDV Run BLAST on NCBI transcript from alignment at scaffold_309:389387..390895 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058341 ID=TCONS_00058341|Name=TCONS_00058341|organism=Clytia hemisphaerica|type=transcript|length=1509bp|location=Sequence derived from alignment at scaffold_309:389387..390895 (Clytia hemisphaerica)
CCTCCTTAAACTGGCcaataattgtttttgaaaaatccatCAGACATCAG
ATATGATTGACGATTCTCTATTATGAGGTGCTCCAAGCAAATGTTTCTCA
GAATTTACAATTGAAAATGCTTTCTTCTCTTGGTTCGTCACTTTGTAAAA
TAACATTCGAACATTTTTACGGAACTTTCGATCAATGATTGAATAGATCA
AAGGGTTGATGCTGGCATGAATGGCGTACGGTAGCATAGCTGCCAGCTGT
AAATAAGAGTATGTCTCCTGAGCTAGATCATCAAAAACTCCATATCCGTG
TAAAAGATTGAGTAACCGGTTCGGTGCAACGAGAATGACAAAAGAGACTA
GAAGATAAGCTATTATAGAGGTAATCCGACGATCTTCTCTACGACGGCGA
TGCTTCTGTTGTTTCCCGATTATTGAACCCGTTTCGGATTTAACTTGATA
TAAACTTTTGACGATCAAAATGTATAATACTGATGTCACAATTATAGGAA
ACAAAAATGTCCCGATCACTAAAACCATGTCATAAATCAAAGCTTGATGA
GGATCGGACCAATTTTTAGTACATTCTCCACCGTGTATTACATCTAAATG
AATTATTAGGGGTATACTAAACGTAATAGCCCATACAATGTTTAGTATCG
TCgtcaaataaattttcttattcGACACTCGAATTTGGAATGGCTTTACA
ATGCCATTAAAACGTTCGAAAGCAATAATCATGACGAAACCTAGAGATAT
CATACAAAAAGCATGGACAGCGAAACGTAGTATTTTACACATGATTGTCT
CATAAATCCAAAGGCATGTCCAAAAAGCAGGGAAATAAATCACCAGTTGA
ACAAGTGAGAAAAGAAGGTCAGAAAACGCAAGCATTCCAATAATCCGGCG
ACAAACTGTGATCCGGTGACGGTGATAACCGGTAACCACCAAAACAAGTA
GATTCCCGAAAATCCCGATTGTTGATATCCCGATTATTGCCCGGTTTGTG
ATCCTTCTGGCTAAAGTACATGTTAGCAGTTGATCTTGGTCTCGGCAAAA
GTTGAGATTACCTTTTGGTTTGAGAGCTCTGTACCAAGTGCAATTGCAGT
CTTCCAGTGGTTGTTTGAACAAAGAACAATACTCTAATAGGTTCTCAACA
TGTGCAGTTGGTGCTGTTTCGTTCCCAGTCCACCACTCTGCCTTGTGGGA
CAAATTCTCCATTTGATTTTTGCCTGGAGATACAATTGTTGAAGCCAAAC
CTGATCTTCTTCTATTATGAGGAAGTGATGATGAAATGTTACCACTACCA
TGATATATAAAAGTTGTTGGAGACTTAGATCGACTTGTGTTATTCACCGT
GACGACCGGTTGTATAAGGATAGTTATGACCCATATTGACATAACATTAT
GTTTGGACGACGCACCAGTAAATAAGTTCATTATCCAGTTATATAGTGTC
TATCAGCTCCAATttccaaaaacaatattttgtttACAAGACAAGTCTTT
AACCAACTC Coding sequence (CDS) from alignment at scaffold_309:389387..390895 >TCONS_00058341 ID=TCONS_00058341|Name=TCONS_00058341|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at scaffold_309:389387..390895 (Clytia hemisphaerica)
tCAGACATCAGATATGATTGACGATTCTCTATTATGAGGTGCTCCAAGCA
AATGTTTCTCAGAATTTACAATTGAAAATGCTTTCTTCTCTTGGTTCGTC
ACTTTGTAAAATAACATTCGAACATTTTTACGGAACTTTCGATCAATGAT
TGAATAGATCAAAGGGTTGATGCTGGCATGAATGGCGTACGGTAGCATAG
CTGCCAGCTGTAAATAAGAGTATGTCTCCTGAGCTAGATCATCAAAAACT
CCATATCCGTGTAAAAGATTGAGTAACCGGTTCGGTGCAACGAGAATGAC
AAAAGAGACTAGAAGATAAGCTATTATAGAGGTAATCCGACGATCTTCTC
TACGACGGCGATGCTTCTGTTGTTTCCCGATTATTGAACCCGTTTCGGAT
TTAACTTGATATAAACTTTTGACGATCAAAATGTATAATACTGATGTCAC
AATTATAGGAAACAAAAATGTCCCGATCACTAAAACCATGTCATAAATCA
AAGCTTGATGAGGATCGGACCAATTTTTAGTACATTCTCCACCGTGTATT
ACATCTAAATGAATTATTAGGGGTATACTAAACGTAATAGCCCATACAAT
GTTTAGTATCGTCgtcaaataaattttcttattcGACACTCGAATTTGGA
ATGGCTTTACAATGCCATTAAAACGTTCGAAAGCAATAATCATGACGAAA
CCTAGAGATATCATACAAAAAGCATGGACAGCGAAACGTAGTATTTTACA
CATGATTGTCTCATAAATCCAAAGGCATGTCCAAAAAGCAGGGAAATAAA
TCACCAGTTGAACAAGTGAGAAAAGAAGGTCAGAAAACGCAAGCATTCCA
ATAATCCGGCGACAAACTGTGATCCGGTGACGGTGATAACCGGTAACCAC
CAAAACAAGTAGATTCCCGAAAATCCCGATTGTTGATATCCCGATTATTG
CCCGGTTTGTGATCCTTCTGGCTAAAGTACATGTTAGCAGTTGATCTTGG
TCTCGGCAAAAGTTGAGATTACCTTTTGGTTTGAGAGCTCTGTACCAAGT
GCAATTGCAGTCTTCCAGTGGTTGTTTGAACAAAGAACAATACTCTAATA
GGTTCTCAACATGTGCAGTTGGTGCTGTTTCGTTCCCAGTCCACCACTCT
GCCTTGTGGGACAAATTCTCCATTTGATTTTTGCCTGGAGATACAATTGT
TGAAGCCAAACCTGATCTTCTTCTATTATGAGGAAGTGATGATGAAATGT
TACCACTACCATGATATATAAAAGTTGTTGGAGACTTAGATCGACTTGTG
TTATTCACCGTGACGACCGGTTGTATAAGGATAGTTATGACCCATATTGA
CATAACATTATGTTTGGACGACGCACCAGTAAATAAGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058341-exon-scaffold_309-1491911889:389387..390895 | TCONS_00058341-exon-scaffold_309-1491911889:389387..390895 | Clytia hemisphaerica | exon |
| TCONS_00058341-exon-scaffold_309-1510915933:389387..390895 | TCONS_00058341-exon-scaffold_309-1510915933:389387..390895 | Clytia hemisphaerica | exon |
| TCONS_00058341-exon-scaffold_309-1575043694:389387..390895 | TCONS_00058341-exon-scaffold_309-1575043694:389387..390895 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:389387..390895 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00058341 vs. Swiss-Prot (Human)
Match: GHSR (Growth hormone secretagogue receptor type 1 OS=Homo sapiens GN=GHSR PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.448e-16 Identity = 82/338 (24.26%), Postives = 157/338 (46.45%), Query Frame = 1
Query: 448 GNLNFCRDQDQLLTCTLARRITNRAIIGISTIGIFGNLLVLVVTGYHRHRITVCRRIIGMLAFSDLL------FSLVQLVIYFPAFWTCLWIYETIMCKILRFAVHAFCMISLGFVMIIAFERFNGIVKPFQIRVSNKKIYLTTILNIVWAITF--SIPLIIHLDVIHG--------GECTKNWSDPHQALIYDMVLVIGTFLF-PIIVTSVLYILIVKSLYQVKSETGSIIG---KQQKHXXXXXXXXITSIIAYLLVSFVILVAPNRLLNLLHGYGVFD----DLAQETYSYLQLAAMLPYAIHASINPLIYSIIDRKFRKNV-RMLFYKVTNQEK 1386
GN + + QL L +T + + +GI GNLL ++V R T + +AFSDLL LV+L Y P W + ++CK+ +F + ++ + ++ ER+ I P + +V K + ++ ++WA+ F + P+ + + V H EC L+ MV V F F P+ +VLY LI + L++ + +++G + Q H++ ++A ++ +F++ P + L F+ ++AQ + Y L + + + + A+INP++Y+I+ +K+R V R+L ++ +Q K
Sbjct: 26 GNDSLGDELLQLFPAPLLAGVTA-TCVALFVVGIAGNLLTMLVVSRFRELRTTTNLYLSSMAFSDLLIFLCMPLDLVRLWQYRP------WNFGDLLCKLFQFVSESCTYATVLTITALSVERYFAICFPLRAKVVVTKGRVKLVIFVIWAVAFCSAGPIFVLVGVEHENGTDPWDTNECRPTEFAVRSGLLTVMVWVSSIFFFLPVFCLTVLYSLIGRKLWR-RRRGDAVVGASLRDQNHKQT------VKMLAVVVFAFILCWLPFHVGRYLFSKS-FEPGSLEIAQIS-QYCNLVSFVLFYLSAAINPILYNIMSKKYRVAVFRLLGFEPFSQRK 347
The following BLAST results are available for this feature:
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