TCONS_00058244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058244
Unique NameTCONS_00058244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1066

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058244 ID=TCONS_00058244|Name=TCONS_00058244|organism=Clytia hemisphaerica|type=transcript|length=1066bp
gttgtttatttatcGTCAAAGTTGCAAATAATCGAATatcataataaata
ataaagaaaacaaaaacacaaaGCCAAAATGCGAATGCCAACAGAGGAGG
CACACAACCAGACGCCTCCAACCAACACCTCCTTATTCAGTGAGCTAGAG
ATGTCAATGTCAGAAGCAGATATGAATCTTCATCACCAGAACAACGTTAG
CACGCCTTTAAAACATCAAATGTCAGATGATGAAGATGTTCCAGATATTT
TTGTTACCACGCCTAACAACCGTGATTTAAATAGGATCTCATCAGAGTTA
CGTGAAGTTTACCTGAAGCTGATCTCATTGAAACATAAACTAAAAGACGA
GGATGATTCCGCGCGGACGGATAATGGCGaagattatgacgtcatcactg
cTGACATGGTATCGAGGCTGGTAGATCAAATCATTCATTTGATTCAAGAA
CGAATTTTGTCACTTGGGATTATTGACCCACGAACTGAAAGTCCAAGGCT
TGGTTCGGAGAATGGGGACGAGACATGTTCGTTACCAGACTCCAGACATT
CTGATACTGAAGTTGAACTCTTAGAACAACAATTAGTGGAGTTAAACCAA
CTTTTGAACGAGAAGAATACCGAATGTGAAGACAAGAAAAAAGAATTACA
TGCTCTTCAAGCCACTGTTGTTGTTCAGGAAGAAAAAGCTGACATCTTGG
AAGTTAAGGCCAACAAACAAGAGAGAGAAATCGAAGCATTGCGTTCAGAA
AGAGATTTGTTGTTATCTGATAAAACGATGGAAGAAAAGTTGAAACAAGT
TCTTGAGGAGAGAGATGAAGCTATCAAAAGAGCGAACGATCTTCAAGCCC
ACGAAGAACAGCACACAAGTGACATGAAGAAACTGAACAATCAACTTATT
TCAGCTGTACAACAAAAATTAGAACTTTCTGAGCAGCTAGAAGAATGGCA
GTTTGACATGGCTTCACTGATCGATCAACAATTGACGTCACAAATCAAGA
ACGAACAAAAACGTTCGAGAAAGAGAACAAACAGTGGTAGTCAACAGCAA
cagcagcaacaacaac
Run BLAST on NCBI

transcript from alignment at scaffold_309:497100..503051+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058244 ID=TCONS_00058244|Name=TCONS_00058244|organism=Clytia hemisphaerica|type=transcript|length=5952bp|location=Sequence derived from alignment at scaffold_309:497100..503051+ (Clytia hemisphaerica)
gttgtttatttatcGTCAAAGTTGCAAATAATCGAATatcataataaata
ataaagaaaacaaaaacacaaaGCCAAAATGCGAATGCCAACAGAGGAGG
TATTGTTTGTGATATGTATCTTGTGGAGGTGTTAATAGTGTTAAtaccag
ggtggtctggaaaatgaaaattcaaggGGGTTCGGTTTTTCGAGTGTGAA
AATGGTCAGTAAAAtaaggttgaaaatccagggtgttCAGTAAAACGAGG
TTAAAAATCCAGAATTCCAATAAATTAGAAGAAAATTCCAGGGGGGCTCt
actttccgaaaaaaacttcctcaacaacaaaaataattttgaaatagtct
tttaaaggttttgtctaggaatctacacattttttaagaacattcaaaaa
ctttaaaacctccaggtgttcttaacttttcaagtttgaaaccttaaaat
gttctgaaattTTAATATCACCATTTTCTtagtgcacgtttttttatgag
aacacaGTCCAATTTCCTAACAAATAGGGTGTTTTAGaatctttaaaatg
ttcttaacttgctcttaatattttagccatcgaagccttatgtttttaga
tagcttgttctcataaaaaaaacttttaccttGCACCTGACTCTCTCCTT
CTACCACTCTCCAAGAAGTGAAATAAATAATCATTTAAAAGTGAATCCAA
AAGTAATACTTAACTTTTCTTTCATCTGCAGGCACACAACCAGACGCCTC
CAACCAACACCTCCTTATTCAGTGAGCTAGAGATGTCAATGTCAGAAGCA
GATATGAATCTTCATCACCAGAACAACGTTAGCACGCCTTTAAAACATCA
AATGTCAGATGATGAAGATGTTCCAGATATTTTTGTTACCACGCCTAACA
ACCGTGATTTAAATAGGGTAAGTACCTCACCAAAAgccgggatttttcat
tcccTACTGCCAAGGTCTTCGAAAGAAACCCAAAAACCTGGcctccaaac
attcgaaaaagtggAATCTGGTGAAATAGACATTACATACAACGTAGAAA
AAAGCTGTGACGACTAGTAAAGGCTAGGGTAAGTTGAGATTTTCAGCGGT
GCGCAACCTGGGCAGATTTTATTACGGAACCATGGCTGGAGTTAATACTT
GTCATGCGCGGTGTATCATGATCCGCTACGTCGTCGCAACATACACcaaa
cgttatatggacgttgtatTGTTGTTTAGTGTGTAAGCTGGGATTTGGAA
CTAGTGTATAGCATAGCCCTTTAACTTTTAACTACATGTAAAGGAGACTC
AGACCAGCTTATTCGTAGGTAAAAAAAACCTCCCTGACCTCTTCAGCTTG
GCCCCCGCTTGGCCTTTTTTTTAATACTTCGatagtctgaatcacagacc
cCTACATAAACCACATGTAATCTATAAGGAGGACGAATCCGTTAGTGAAT
GCTAGCAGCCTTAAACTTTGACGAATTTTCCTTTAAACGGCATAACGTAA
AGTATCAGCTCTTAGCAAACAAACTATAGCCTAAAAAAACCTAGTCCAGG
TCTAGAGTCGATGACTGTTATTCCTGTTTCCCTGATTTCGCTGGTTAAGA
ATCCTGTCAGTTTCAAATAAAACAGATTTTCAATTAACCATGATCAaccc
aaattgaaattttttggtgtcTCCTAAAGACGTcttactttttttagttt
tctcacTCATTTTCACTTCTGTTATCCAACAGATCTCATCAGAGTTACGT
GAAGTTTACCTGAAGCTGATCTCATTGAAACATAAACTAAAAGACGAGGA
TGATTCCGCGCGGACGGATAATGGCGaagattatgacgtcatcactgcTG
ACATGGTATCGAGGCTGGTAGATCAAATCATTCATTTGATTCAAGAACGA
ATTTTGTCACTTGGGATTATTGACCCACGAACTGAAAGTCCAAGGGTAGG
TTTATTGGTGTAAAATTCATTTTCTGAAAGCTCAGATTCAGGAATAAACT
AACTCTACTACTACACTGGAATCGTTTATAATTCATGTAATACAGTGTTA
TTGTTGTTATATAATAATACAATAATCGTAACGagataatatcagttttt
atACTATAATTTGTTCTTTACATAGTTTTTGCTTATTTCCTACTACGACC
AAATTAATTGTCTAGCATGTTAGGACTACCCGACTACCAAAAAATCAATA
TAATTGCGAGAATAATTAaaacgaaaatgtttgaaattttctggtaTTCA
TTTTTTTATCTATGAGTCATAGTCTGTGTATGAGCTATTAAATAAATTGA
CTGAATATGCTTGTTTCCGACGGATTTCGAGGAAATTACATATTAATCCT
CAGCCTTCCGATTGACACAAATTATCTTcgcttgaaatcaaaatttccta
aattcTCCACATACTTTGTCAGAGTGTGATCTTTTTCTTCCCATTTGATG
ACTTTATAATACAAATTTTATTTAAAGCAATTGACACATATATCAGCTCA
TAGTATTCTAGGAAATCTAAACCGGCCTTAGTATGTTCCTTATAAGTTAA
TATCTTTCTTTTCcctttgaaaacatgatttacaGCCTCTTAAATTCNaa
taatatctttcttttctctttgaaaacatgattttacAGCCTCTTAAATT
CCAATTTAATATTGTAAAAGTGTTCTAAACTGTCATAAAAAATTGGTTTC
GCGAATGTAGCTATTGTTGCAGATtgttgggctattccagaaaaaaaatg
tacTCCTTATGTTGAAGAGGTCTTTAGTGGGAAAGGTGACCTCCTggaat
ttttttcccaattttttaaGACCCccttttggaccaccctggattttcga
cctcgttttGTTCACGATTCATgattttcaacctcattttacctaccacc
ctggattttctaCCTAATTTTCATttaccaccctggatttttacactcga
aaaaccaggcccccttggatttttaatttttcagaccaTCCTGGACgaca
cacctcctcaacataaggGTGCAAACtaactatttctggaatagctgAAA
TAGCCCACCATAACTTTGGTactatttataacaaaaatctTTCATAAACC
CATTGTTTTAATGACTgaaatgttttgttcttttccAGCTTGGTTCGGAG
AATGGGGACGAGACATGTTCGTTACCAGACTCCAGACATTCTGATACTGA
AGTTGAACTCTTAGAACAACAAGTAAGATAACTTATATCTACCATAGCCC
GCCCAGTTTAATCTGGATAATGTTTTTTCACAAGAATCAATTCCAAGATC
CTTGTCAAAACTTCGTTTCCTTGTACCAGATAGTCGTAGACAAGTTCCTG
ATCGCTAGACTAGATCCGGATTTCTCTTTTTACTATTTGTGGGGATTTGA
AACTGCTTTTCATAGTATTCATTCAGATTTTAATATTCATATTTACCATC
ACACAAACGCCAAACTTCGAAAATTATGGCGcgtgaaaaaaaacattcaa
tcgTCATTCCAAAAACAGAATAAATCtcaaggtttcactttttttgcttg
tgaataaggttaaagatttttttctagatTCCGGATCCCTAGACTAGGTA
TAGATCTCTCTGTTAAAGCTATTCCTGGAGGgaatattgaaaatataacT
CATAAGTAAggaagtctgcgaccgcagtcggaggcgacccgaaggctcct
ctttcgatagctatctacccgaaggtaggggagggcgccactctttctcc
ctggattgttcCATTTACCCTTGAactttctcttaattgctgagcatcaa
gcagagaggcatcaagtaccattttgggaatctttggtatgacccggctg
ggggttgaacccaaaccttgcgcaccgtagcgggatgctctaccactgca
ctacggtcgctcaTACATCATAACTCATACATCCATTcaagttttctttc
ttttttcttttccttttagTTAGTGGAGTTAAACCAACTTTTGAACGAGA
AGAATACCGAATGTGAAGACAAGAAAAAAGAATTACATGCTCTTCAAGCC
ACTGTTGTTGTTCAGGAAGAAAAAGCTGACATCTTGGAAGTTAAGGTAGC
TTGTTTAAATATCGTTTCTGTtttacacacccctgtctcgtaGCCTCGGT
AGAAGTTTTTCtctcagttttttttttcactcttttTCTTGGCGTCATAC
AGCGACATTAGaaggggggttgtacttttacggtgtgacgggattggccc
tattttagtacggtattacgggactttacgaaaaaagagacgagaaaacg
gtattttaaagtCAGACATTGACGGTATTTAGCCTTACTTTTTGTCATTA
TGTCAGTATTTTAATctctacaaaccggtgtgacggtgttatttttttta
attttcgggattccgggattcagcaaaaattttgaaccTCCTACAAACCC
CCCTTTAGAAGATTTATCATAACGATATTATTTTATTTGTCCCTTAGGCC
AACAAACAAGAGAGAGAAATCGAAGCATTGCGTTCAGAAAGAGATTTGTT
GTTATCTGATAAAACGATGGAAGAAAAGTTGAAACAAGTTCTTGAGGAGA
GAGATGAAGCTATCAAAAGGTAATGGAAGAGTTAAATCGGATTACTGAAA
TTCACCTGTTTCATTTCCTATCTCTcatcctatttttctctttcctGACT
GGTGTCTGAAACAGCCTAACTAAGTTTTTAATTTATGATACCTGCAACTC
AtatttcgaccaatcaaattatACCCAAGGGTTCTAGGTTTAGGAGGTGA
CGGgcatgtccgagccgaaaatcggaAATCGACCTTTTGACATTTATGAG
ACCCTTAAGAGacttttgccaaagattttCAACAAATCATGAACCATGGA
GAGGGAAATTCACGATTTttgtgaccctttgagagactagcCTATGAATA
TGTATTcctttgagggacttttgaCAAAGACATACCTGTCACTTGTTTTG
CCTAAGTATATTTTAGGCTGATATTATTTGTGTctatgaaaaagtcaaaa
tcaaattttcagtAATCTTGGAGACAATCGTTCCTTGTAAACCTATCTTC
CTCATCATTTAAGGGCTTATGGGTGTATTTTTATTACGAAGACTAAATTT
TAATTTCCACTTCACCGATAGAGCGAACGATCTTCAAGCCCACGAAGAAC
AGCACACAAGTGACATGAAGAAACTGAACAATCAACTTATTTCAGCTGTA
CAACAAAAATTAGAACTTTCTGAGCAGCTAGAAGAATGGCAGGTATGTGT
CATTTTTTATTCATCTCTAAAAACTCGGTATAGCAAATACCTCACACAAA
AAAGTACTCTGATATCCCGAATAGTAGGTGGTCAGAATAAACAGGGGGGT
CCGAAGTTTTACTCTAAACCCTGCCCTCCTACCCCCATCCAAAGAAATTA
TAGAATACGGTAACTATAAGCTACAATCAATTTATTTAGAGCAATTCAGC
TTGcgatagctgaaaatatttttaaaaataagatgGAATATTATtgagcg
ggggggggggggggggttatttTAGACCATATAGTAATATATTTTTCCTT
GTTACTGTGAAAGGAAAAATCGTAAACGCTAGTGTGAGCTATATCCGGAA
AAAAGGGGTATGAATAAAGCGTACACTATGTGttcacgtttttttctttt
tcttcactcgctgaaaatttttgaaaatacactGAGGTATTAACCTaaaa
ttttgacactttttaaCAGTTATTTTTTGACTATGATTTAGGGAGAATTT
GTTCATGAAATAATCTTTACTTCTTCCGCCTCTACAGTTTGACATGGCTT
CACTGATCGATCAACAATTGACGTCACAAATCAAGAACGAACAAAAACGT
TCGAGAAAGAGAACAAACAGTGGTAGTCAACAGCAAcagcagcaacaaca
ac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036696XLOC_036696Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058244-exon-scaffold_309-1491911889:497100..497198TCONS_00058244-exon-scaffold_309-1491911889:497100..497198Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1510915933:497100..497198TCONS_00058244-exon-scaffold_309-1510915933:497100..497198Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1575043694:497100..497198TCONS_00058244-exon-scaffold_309-1575043694:497100..497198Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1491911889:497831..498016TCONS_00058244-exon-scaffold_309-1491911889:497831..498016Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1510915933:497831..498016TCONS_00058244-exon-scaffold_309-1510915933:497831..498016Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1575043694:497831..498016TCONS_00058244-exon-scaffold_309-1575043694:497831..498016Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1491911889:498832..499044TCONS_00058244-exon-scaffold_309-1491911889:498832..499044Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1510915933:498832..499044TCONS_00058244-exon-scaffold_309-1510915933:498832..499044Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1575043694:498832..499044TCONS_00058244-exon-scaffold_309-1575043694:498832..499044Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1491911889:500238..500321TCONS_00058244-exon-scaffold_309-1491911889:500238..500321Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1510915933:500238..500321TCONS_00058244-exon-scaffold_309-1510915933:500238..500321Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1575043694:500238..500321TCONS_00058244-exon-scaffold_309-1575043694:500238..500321Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1491911889:501069..501194TCONS_00058244-exon-scaffold_309-1491911889:501069..501194Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1510915933:501069..501194TCONS_00058244-exon-scaffold_309-1510915933:501069..501194Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1575043694:501069..501194TCONS_00058244-exon-scaffold_309-1575043694:501069..501194Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1491911889:501597..501718TCONS_00058244-exon-scaffold_309-1491911889:501597..501718Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1510915933:501597..501718TCONS_00058244-exon-scaffold_309-1510915933:501597..501718Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1575043694:501597..501718TCONS_00058244-exon-scaffold_309-1575043694:501597..501718Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1491911889:502271..502391TCONS_00058244-exon-scaffold_309-1491911889:502271..502391Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1510915933:502271..502391TCONS_00058244-exon-scaffold_309-1510915933:502271..502391Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1575043694:502271..502391TCONS_00058244-exon-scaffold_309-1575043694:502271..502391Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1491911889:502937..503051TCONS_00058244-exon-scaffold_309-1491911889:502937..503051Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1510915933:502937..503051TCONS_00058244-exon-scaffold_309-1510915933:502937..503051Clytia hemisphaericaexon
TCONS_00058244-exon-scaffold_309-1575043694:502937..503051TCONS_00058244-exon-scaffold_309-1575043694:502937..503051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:497100..503051 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.54133	1.9089	0.317421	0.337079	5.0407	1.73405	9.69298	15.4535	11.9267	19.5503	6.23433	5.04354	19.824	3.56846	12.7484	9.00434	7.71748	8.95259	18.1078	27.3858	7.23326	8.57638	4.91176	8.19212	4.22527	2.73774	18.2637	13.1713	1.89101	2.2689
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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