TCONS_00058343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058343
Unique NameTCONS_00058343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058343 ID=TCONS_00058343|Name=TCONS_00058343|organism=Clytia hemisphaerica|type=transcript|length=768bp
gttttttggttgttttttttttagtttttgatatACTCACAAATATAGAT
ATAAAAGTTTTACAATGATAATAGGATAAtagaattttaactttttattc
tGATAAAATATATACAGTTTTTTTATAACTATTCaactttaataataatt
ttcttaacttgATAAATGTAATAAATTtggaaatgtttttgtttgggTGA
TAATTATTCCACATAATTAAATCCAAGAGCTGGAAAACGATATTCCATTT
AAAAATTGTAATATGGGTTCAAAGCAAAGCCATTGTTGGTgagaatttcc
caaaaaaacgAAATACAATCATTTGGGTTATTATAGCTGGGAAGAAAATC
GCACAGAGAATTGGTACTACCAAAACTATTACTGTTTTGTGATTTTGATT
CAGATTCAGATTTAGATTTTGATGCAGACTCCAATCTGGTCAAATGTGTT
TGAACTTCTTTCAACCGTGTAATCAACTCTCCTTTCCGTTTGGTAAGGGC
GCTGATGACGGCAGAATTGTTGGCGGGCGCCCTCTTCTTATGTGTAGGGG
CGGTTTGGATGCTACTGATTGCGATTCCACATAGTAATACCAAAGCGATG
ACTGCGGTAttcattttgaatgttttctttctttagTATCCTCTTGCTTT
GTCTGTGAGTTGATAGCTGAAGATCTCTTCTCGGTAACAGTTTCTGTCAA
CTTCAGCTATGATTTAATATCTGATGATTTTTGTTGAGTTCGTCTTTCTC
CAGTGATGTATGTTTACC
Run BLAST on NCBI

protein sequence of TCONS_00058343-protein

>TCONS_00058343-protein ID=TCONS_00058343-protein|Name=TCONS_00058343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MNTAVIALVLLCGIAISSIQTAPTHKKRAPANNSAVISALTKRKGELITR
LKEVQTHLTRLESASKSKSESESKSQNSNSFGSTNSLCDFLPSYNNPNDC
ISFFWEILTNNGFALNPYYNF
Run BLAST on NCBI

transcript from alignment at scaffold_309:522088..522855

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058343 ID=TCONS_00058343|Name=TCONS_00058343|organism=Clytia hemisphaerica|type=transcript|length=768bp|location=Sequence derived from alignment at scaffold_309:522088..522855 (Clytia hemisphaerica)
GGTAAACATACATCACTGGAGAAAGACGAACTCAACAAAAATCATCAGAT
ATTAAATCATAGCTGAAGTTGACAGAAACTGTTACCGAGAAGAGATCTTC
AGCTATCAACTCACAGACAAAGCAAGAGGATActaaagaaagaaaacatt
caaaatgaaTACCGCAGTCATCGCTTTGGTATTACTATGTGGAATCGCAA
TCAGTAGCATCCAAACCGCCCCTACACATAAGAAGAGGGCGCCCGCCAAC
AATTCTGCCGTCATCAGCGCCCTTACCAAACGGAAAGGAGAGTTGATTAC
ACGGTTGAAAGAAGTTCAAACACATTTGACCAGATTGGAGTCTGCATCAA
AATCTAAATCTGAATCTGAATCAAAATCACAAAACAGTAATAGTTTTGGT
AGTACCAATTCTCTGTGCGATTTTCTTCCCAGCTATAATAACCCAAATGA
TTGTATTTcgtttttttgggaaattctcACCAACAATGGCTTTGCTTTGA
ACCCATATTACAATTTTTAAATGGAATATCGTTTTCCAGCTCTTGGATTT
AATTATGTGGAATAATTATCAcccaaacaaaaacatttccaAATTTATTA
CATTTATcaagttaagaaaattattattaaagttGAATAGTTATAAAAAA
ACTGTATATATTTTATCagaataaaaagttaaaattctaTTATCCTATTA
TCATTGTAAAACTTTTATATCTATATTTGTGAGTatatcaaaaactaaaa
aaaaaacaaccaaaaaac

Coding sequence (CDS) from alignment at scaffold_309:522088..522855

>TCONS_00058343 ID=TCONS_00058343|Name=TCONS_00058343|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_309:522088..522855 (Clytia hemisphaerica)
atgaaTACCGCAGTCATCGCTTTGGTATTACTATGTGGAATCGCAATCAG
TAGCATCCAAACCGCCCCTACACATAAGAAGAGGGCGCCCGCCAACAATT
CTGCCGTCATCAGCGCCCTTACCAAACGGAAAGGAGAGTTGATTACACGG
TTGAAAGAAGTTCAAACACATTTGACCAGATTGGAGTCTGCATCAAAATC
TAAATCTGAATCTGAATCAAAATCACAAAACAGTAATAGTTTTGGTAGTA
CCAATTCTCTGTGCGATTTTCTTCCCAGCTATAATAACCCAAATGATTGT
ATTTcgtttttttgggaaattctcACCAACAATGGCTTTGCTTTGAACCC
ATATTACAATTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036752XLOC_036752Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058343-proteinTCONS_00058343-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058343-exon-scaffold_309-1491911889:522088..522855TCONS_00058343-exon-scaffold_309-1491911889:522088..522855Clytia hemisphaericaexon
TCONS_00058343-exon-scaffold_309-1510915933:522088..522855TCONS_00058343-exon-scaffold_309-1510915933:522088..522855Clytia hemisphaericaexon
TCONS_00058343-exon-scaffold_309-1575043694:522088..522855TCONS_00058343-exon-scaffold_309-1575043694:522088..522855Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:522088..522855 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.132492	0	0	46.9792	29.5886	0.396422	0.154699	0.285864	0.634837	130.21	152.069	0.797718	0.359168	0.291077	0.33079	0.272564	0.364886	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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