TCONS_00058344 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058344
Unique NameTCONS_00058344
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058344 ID=TCONS_00058344|Name=TCONS_00058344|organism=Clytia hemisphaerica|type=transcript|length=2213bp
TTTCTTTGTAAATAATTTAGGATACAAAGtgtcaagaaattttttttttt
ttattgtttttttaatttttttaatcagttGAAGAAAATAATACACCGTA
GTTGTCagggttaaagaaaagaaacgagatgaagaaatttttgataaatt
aatttttcaccatTAAATAAACCATATTATATATAATTTATCTTATTACA
CTTTAAATTTCTTGCAGGGTTAATTTTTCGTTCTAACCCCTTGTTTTTGT
TAAGAGTTCTACAATACTTGAATTACTATAATGAGGAAAATTActtttga
gaatttgagaagTCGAAAGAGTTTTTTGACCCTTGACTTTTTAGCGATAT
TATTTTTCTAGACTAAAGGCAGTATCAAAGCAATGAAAtccaataaaatt
ttcaaaacactaCGGagtatcaaatttttcacttttatgtatcaaattat
gattttaaaacttacgaaataaaatataaatgataatgttattataataa
tGAGAATACTATAGGAATATTCTAAATTAAATGATTTAGCGTAGGAAGTA
GGAAGCAGCCAGGTAAAATAACCAATTGTAAAATGCGGACCCTAGGAGTG
TATTTTTGAAGTAAacgctttttttatgagaacatccaaacaatttttaa
gccttcatatatttttaacttttattttcacaattttttgagtatttttg
tccattttcttaagaaattgggtgttttagagtccacaaatccttaaaat
gttcttaaattgttcttatataatttgttcttataaaagaaaggtgTACC
CAAAATGCAATTCAAGGGTGTGCAATTTGTTGAGTGCTCTGTAACAGTAT
AATTTTTAGTTCTAGAGAAAACACACAATAAGTATAGCTTTGTATATAGG
GAAAATCATTATCCATTGCAAAATCATTACTACCAAAGTTGAAAGAGTAC
ATCAGGTTGATCAAGATGCTAAAAAGTCCAAAGGTTGGATATAGAAAGTA
GAGGTATGAAAATATATTAAACAATTATTGCTACTTATATGAGTTTTAAG
GTCAAAAGTTCACCTAcagttctttttctttgtagttCTGTGCAActaca
acacccctgtctcacagccccggtggaaattttttcctcagtggtgataa
aaattccaattgaaatcccaatggggatagaaattctattgttccaaggt
taaaaaatctagTGATGGTGGTTttaaagtgcaatttttaaacatggaat
ttcgaatggggacgACAATTTCCCAGTGGACCTGAAATTACaggtttttt
taccaccggggacgaaatttttgccaaacttTCTAGGGGGCGCGCTgggg
ttccagtgggtctgtgacacagtggTGCACTACAACAACTGCTATAATGC
TATTAATAAAACACATTGTACTGTTTATTAAATATTTATCTCGTAGATTC
TTCTTCCAATATTATCGAATGAATGTCAAAGTGGCGGGTGAATCTGCTTC
AAATGTTTAGAAACAACGAGTGGTCAAAGAAGCcaagaaatcaaaaattc
cTGGGTAATAAAGCGAATTATAATCACTTTGCAAACCACTGGCAACTCTT
GTTCCATTCTTCTTGACCCATATATCAACCACAAGCTCTGTGCTGTTGTT
GATTGTAATAGTGCTACCAGAATCCGAATTTGAAGCATGTCCTTTACTGA
AACCAGAGCTAAAGTAATAATAACAGAACACATTCAACGGGTCATCTCCA
GAATTCGCAACACCATTACTACTTAAACGCTGTTTTTCTGAAGATGATAA
TCCACCATTGTTTGGTAATTGTTGTGTTAATGCAACCATCTGGCTTCTCA
AACTATCAAGTTGTCTTCGAATTTCAGCTTCTTTTGTAGCTTGGTTTATT
GGCTTTTCAGTTGGTTGACCATTCGGGCCTATTTTTCGGTACCAATTCTT
GGGTATGGGTTTAGTATCATGTGTAACAAAGAAAGCagaaaacaacaata
aaacCCAAACTGTGTTCGCCATAGTTGACGGTATTTTAACCACCAAAGTT
ATGATATCAAATATTCTCACCTCTTCTTTGACAATCTTTCTCGACCAAAA
CACACCGAAACACACTTTATAAGATGTGATGTAGGTTGTTGACAAAAGGC
AAGAGATGTCAGAATGTTTGATCAAATCTCTTATTTAATAGATTATGAGC
ACAAATCATTATA
Run BLAST on NCBI

protein sequence of TCONS_00058344-protein

>TCONS_00058344-protein ID=TCONS_00058344-protein|Name=TCONS_00058344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MANTVWVLLLFSAFFVTHDTKPIPKNWYRKIGPNGQPTEKPINQATKEAE
IRRQLDSLRSQMVALTQQLPNNGGLSSSEKQRLSSNGVANSGDDPLNVFC
YYYFSSGFSKGHASNSDSGSTITINNSTELVVDIWVKKNGTRVASGLQSD
YNSLYYPGIFDFLASLTTRCF
Run BLAST on NCBI

transcript from alignment at scaffold_309:527220..529432

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058344 ID=TCONS_00058344|Name=TCONS_00058344|organism=Clytia hemisphaerica|type=transcript|length=2213bp|location=Sequence derived from alignment at scaffold_309:527220..529432 (Clytia hemisphaerica)
TATAATGATTTGTGCTCATAATCTATTAAATAAGAGATTTGATCAAACAT TCTGACATCTCTTGCCTTTTGTCAACAACCTACATCACATCTTATAAAGT GTGTTTCGGTGTGTTTTGGTCGAGAAAGATTGTCAAAGAAGAGGTGAGAA TATTTGATATCATAACTTTGGTGGTTAAAATACCGTCAACTATGGCGAAC ACAGTTTGGgttttattgttgttttctGCTTTCTTTGTTACACATGATAC TAAACCCATACCCAAGAATTGGTACCGAAAAATAGGCCCGAATGGTCAAC CAACTGAAAAGCCAATAAACCAAGCTACAAAAGAAGCTGAAATTCGAAGA CAACTTGATAGTTTGAGAAGCCAGATGGTTGCATTAACACAACAATTACC AAACAATGGTGGATTATCATCTTCAGAAAAACAGCGTTTAAGTAGTAATG GTGTTGCGAATTCTGGAGATGACCCGTTGAATGTGTTCTGTTATTATTAC TTTAGCTCTGGTTTCAGTAAAGGACATGCTTCAAATTCGGATTCTGGTAG CACTATTACAATCAACAACAGCACAGAGCTTGTGGTTGATATATGGGTCA AGAAGAATGGAACAAGAGTTGCCAGTGGTTTGCAAAGTGATTATAATTCG CTTTATTACCCAggaatttttgatttcttgGCTTCTTTGACCACTCGTTG TTTCTAAACATTTGAAGCAGATTCACCCGCCACTTTGACATTCATTCGAT AATATTGGAAGAAGAATCTACGAGATAAATATTTAATAAACAGTACAATG TGTTTTATTAATAGCATTATAGCAGTTGTTGTAGTGCAccactgtgtcac agacccactggaaccccAGCGCGCCCCCTAGAaagtttggcaaaaatttc gtccccggtggtaaaaaaacctGTAATTTCAGGTCCACTGGGAAATTGTc gtccccattcgaaattccatgtttaaaaattgcactttaaAACCACCATC Actagattttttaaccttggaacaatagaatttctatccccattgggatt tcaattggaatttttatcaccactgaggaaaaaatttccaccggggctgt gagacaggggtgttgtagTTGCACAGaactacaaagaaaaagaactgTAG GTGAACTTTTGACCTTAAAACTCATATAAGTAGCAATAATTGTTTAATAT ATTTTCATACCTCTACTTTCTATATCCAACCTTTGGACTTTTTAGCATCT TGATCAACCTGATGTACTCTTTCAACTTTGGTAGTAATGATTTTGCAATG GATAATGATTTTCCCTATATACAAAGCTATACTTATTGTGTGTTTTCTCT AGAACTAAAAATTATACTGTTACAGAGCACTCAACAAATTGCACACCCTT GAATTGCATTTTGGGTAcacctttcttttataagaacaaattatataaga acaatttaagaacattttaaggatttgtggactctaaaacacccaatttc ttaagaaaatggacaaaaatactcaaaaaattgtgaaaataaaagttaaa aatatatgaaggcttaaaaattgtttggatgttctcataaaaaaagcgtT TACTTCAAAAATACACTCCTAGGGTCCGCATTTTACAATTGGTTATTTTA CCTGGCTGCTTCCTACTTCCTACGCTAAATCATTTAATTTAGAATATTCC TATAGTATTCTCattattataataacattatcatttatattttatttcgt aagttttaaaatcataatttgatacataaaagtgaaaaatttgatactCC GtagtgttttgaaaattttattggaTTTCATTGCTTTGATACTGCCTTTA GTCTAGAAAAATAATATCGCTAAAAAGTCAAGGGTCAAAAAACTCTTTCG ActtctcaaattctcaaaagTAATTTTCCTCATTATAGTAATTCAAGTAT TGTAGAACTCTTAACAAAAACAAGGGGTTAGAACGAAAAATTAACCCTGC AAGAAATTTAAAGTGTAATAAGATAAATTATATATAATATGGTTTATTTA atggtgaaaaattaatttatcaaaaatttcttcatctcgtttcttttctt taaccctGACAACTACGGTGTATTATTTTCTTCaactgattaaaaaaatt aaaaaaacaataaaaaaaaaaaaatttcttgacaCTTTGTATCCTAAATT ATTTACAAAGAAA

Coding sequence (CDS) from alignment at scaffold_309:527220..529432

>TCONS_00058344 ID=TCONS_00058344|Name=TCONS_00058344|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_309:527220..529432 (Clytia hemisphaerica)
ATGGCGAACACAGTTTGGgttttattgttgttttctGCTTTCTTTGTTAC
ACATGATACTAAACCCATACCCAAGAATTGGTACCGAAAAATAGGCCCGA
ATGGTCAACCAACTGAAAAGCCAATAAACCAAGCTACAAAAGAAGCTGAA
ATTCGAAGACAACTTGATAGTTTGAGAAGCCAGATGGTTGCATTAACACA
ACAATTACCAAACAATGGTGGATTATCATCTTCAGAAAAACAGCGTTTAA
GTAGTAATGGTGTTGCGAATTCTGGAGATGACCCGTTGAATGTGTTCTGT
TATTATTACTTTAGCTCTGGTTTCAGTAAAGGACATGCTTCAAATTCGGA
TTCTGGTAGCACTATTACAATCAACAACAGCACAGAGCTTGTGGTTGATA
TATGGGTCAAGAAGAATGGAACAAGAGTTGCCAGTGGTTTGCAAAGTGAT
TATAATTCGCTTTATTACCCAggaatttttgatttcttgGCTTCTTTGAC
CACTCGTTGTTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036753XLOC_036753Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058344-proteinTCONS_00058344-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058344-exon-scaffold_309-1491911889:527220..529432TCONS_00058344-exon-scaffold_309-1491911889:527220..529432Clytia hemisphaericaexon
TCONS_00058344-exon-scaffold_309-1510915933:527220..529432TCONS_00058344-exon-scaffold_309-1510915933:527220..529432Clytia hemisphaericaexon
TCONS_00058344-exon-scaffold_309-1575043694:527220..529432TCONS_00058344-exon-scaffold_309-1575043694:527220..529432Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:527220..529432 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.102859 tpm) - - (212.859 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1267 1.01952 1.23537 0.830684 0.487621 0.468924 0.512445 0.813741 0.28861 0.262572 0.140664 0.162813 50.392 39.8853 0.20537 0.112709 0.231096 0.261762 117.887 212.859 0.190983 0.102859 0.223283 0.280837 0.275243 0.71282 0.361393 0.293904 0.591884 0.629086
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200Sequence
Match NameE-valueIdentityDescription
back to top