TCONS_00058254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058254
Unique NameTCONS_00058254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058254 ID=TCONS_00058254|Name=TCONS_00058254|organism=Clytia hemisphaerica|type=transcript|length=1657bp
gtttttacaagctcttatttgatttggttggtcgttaagatgtaataaaa
gaatcttattactttttctaaagaacgcgtcatctctatcactttaaatg
accaattagtgaagtatcttgtaaaaactccagctcatcccaaataTTTT
GGTGAATTTCGTCTAAACTtgccaaattcaccaaaattggTTCTCGCCAA
AAAAGCTTCACTTTAATCTACTTTATTCTTTATTCAATTTTAGACTTTTA
TTGAAATTATCATTTATTTCCgaagttgaaaaatgaaaaacaaatagCAG
TGACAAAGAGATGTGTATTGTGTTTCTATGGCGAAGGAACGCCAGCCAAC
CCAAAGGGCGCATCAAATTTGTACTTNTTGTGTTTCTATGGCGACGGAAC
GCCAGCCAACCCAAAGGGCGCATCAAATTTGTACTTGCCGGTAACCGAGA
CGAATTTTTCCACCGACCGGCCAAAGATGCAGATTATTGGGACGAAAACT
CTAATGTTCTGGGCGGTCGTGATATGACGGAAGGGGTATCAGGCGGAACA
TGGATGGGTGTAAACAAACACGGAAAAATCGGATTCCTAACCAATATTCG
CGGCTCAACTTTCGGTGTGGACCCTGCTAAAGCAAACATGAAAGGGCGAG
GTGCTTTGGTGTCAGACTTTCTGTTAAGCGAGCTATCAGCAGAAGCATAC
ATCAAGCAGCTTGAGAATGAGCGGATGCAATACAAACCTTTCAACTTGGT
GTGTGGGGATGTCCTTAACGACCAATATTTCTACTCCAATAGTGTGGACC
AGCAACCTGCTGAACTGTTAACTCAAGATTCCATCTCTCTGAGTAACGGA
ACGTTAGGATGTGGATGGTTTAAAGTCGATCGAAGTCgggaaaagttcga
aaaactGGTCAATGAAAATGTGGACAGTGAACCTACCGCGTTGTTAGAGA
AATTACAAACTTTCCTTGAATGTACCGAGAGAAACTTTCCAGACGAGAAC
ATTAAGGTAGAGAATCCATTCAATGAAGTCCTTTCATCCATTTTCATCCC
AATGCACCCTCAACACAACTATGGCACAAGAACGAACACGATGATGGTTG
TAGAGGAGAATAATCGTGCAACATTCCTCGAACGCACAATGTGTCAAGCT
AACGACCCTACTTCACAATGGAAAAAGTCCCTCTTTCAATTCGATATGAT
GGTCAACTAATTTGAATCTCCTTCTCACTAAACAAATCGCTATTGCCGAC
GTAGTTGCCTATGTAAAATTGGCTTTTGCCGACTTAATGTACTATAGAAC
CCAGAATCTTTTGCCGACGCAAATGAATCTGAATTAGAAAGGCTCTCGCT
CTcacttttagaaaattttcactGATTTATTGATTGTtaggtattcatga
tatgcaccattgcaatgtcttccattccacccaatagctgattggttcaa
agtgacgtattgactgattttacgtcacttacaaccaatcagctgttggg
tccgtgatgtaatgtcagaagacattgcagtggtgcatatcatgaattta
taATCCTTTGTGTATCCGAGTTGGTTACTTTTGTtatcattttatatttt
gtatttatcaattaaaaagaacaaaatgaaataaattgaaTTTTCATGTA
ATTTGAT
Run BLAST on NCBI

transcript from alignment at scaffold_309:584073..589098+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058254 ID=TCONS_00058254|Name=TCONS_00058254|organism=Clytia hemisphaerica|type=transcript|length=5026bp|location=Sequence derived from alignment at scaffold_309:584073..589098+ (Clytia hemisphaerica)
gtttttacaagctcttatttgatttggttggtcgttaagatgtaataaaa gaatcttattactttttctaaagaacgcgtcatctctatcactttaaatg accaattagtgaagtatcttgtaaaaactccagctcatcccaaataTTTT GGTGAATTTCGTCTAAACTtgccaaattcaccaaaattggTTCTCGCCAA AAAAGCTTCACTTTAATCTACTTTATTCTTTATTCAATTTTAGACTTTTA TTGAAATTATCATTTATTTCCgaagttgaaaaatgaaaaacaaatagCAG TGACAAAGAGATGTGTATTGTGTTTCTATGGCGAAGGAACGCCAGCCAAC CCAAAGGGCGCATCAAATTTGTACTTNTTGTGTTTCTATGGCGACGGAAC GCCAGCCAACCCAAAGGGCGCATCAAATTTGTACTTGCCGGTAACCGAGA CGAATTTTTCCACCGACCGGCCAAAGATGCAGATTATTGGGACGAAAACT CTAATGTTCTGGGCGGTAAATTAGTGATGTTTACTTCATTTAAAGATAGA CTCCAGTTGGCTTGAANTGGTAAGTTGGTAATATGTTTACTTCACTTGAA CACCGACTTCAGTTGAGTTGAAACTGGAAAGTTAgttaatttgatttatt ttgagTCATTAATATACCAAAGTCTGTAAGCAGTTTTGTTGAATCTCGAC ATCCTTCGTCtgattccgacacccttctttaaaccTTGGGATCATAAAAG GTTTGAGTCGCTATTCGCTTATAAACAACGGTCAAAGAGGAAAACATCTT TTTatcaatcagtgattccaaaccttttttttttatcCTGTCTCTAATAA GGttgtcggaattagatgagggatgtcgacattagaccaatttGTGGTAC TCTTTATTTTACTATTATAACGTTTTTTTCACAGGTCGTGATATGACGGA AGGGGTATCAGGCGGAACATGGATGGGTGTAAACAAACACGGAAAAATCG GATTCCTAACCAATATTCGCGGCTCAACTTTCGGTGTGGACCCTGCTAAA GCAAACATGAAAGGTCTAATATTGGTTCATAACGAATAGTTTTCAACATC TACACCTTTTTTTTTagaagaacatccaaaatttttgaagccttgggatg ttcttagcttttccggtttcaagcctaaaaatgttcttaacatgttctta ttttcagcatattttgagtatttttatccatttcCCCTGAGaaaacaggt gttttagagcccacgatgccttaaatattcttaacttgttcttaagattt tggccaccgaagccttatgttcttatatagtttcttataaaaaaacgtgt agttttcAAAATCTTGCTTATTAATTAGAGAGTCTAAAAATTAGTGTGAC ATCAAATAATATGGAATCAGATTAACGCCTTCTTTACTTCCCTTTGTGTT TTAGGGCGAGGTGCTTTGGTGTCAGACTTTCTGTTAAGCGAGCTATCAGC AGAAGCATACATCAAGCAGCTTGAGAATGAGCGGATGCAATACAAACCTT TCAACTTGGTGTGTGGGGATGTCCTTAACGACCAATATTTCTACTCCAAT AGTGTGGACCAGCAACCTGCTGAACTGTTAACTCAAGGTACACTTTAAGT CCTCGTAGCTTTCTAGCATTAGCGTGGTGTCAGAGGGTAGTGCTCCCCCA TGTCAGAGGTTAGTACTTTCCCATGTCAGAGGGTAGTACTCCCCATGTCA GTGGGTAGTGCTCCCCCGTGTCAGTGGGTAGTGCTCCCCCTATGTTAGGG GGTATTGCTCCCCCATGACAGGTGGTATTGCTCCCCCATGACAGGTGGTA TTGCTCCCCATGTCAGAGGGTATGGATCCTCATATTAGGGGGTATGGCTC CCCTATGACAGGGGATAAGTGCTCCCCCAGTGTCTATTTTTAGGGGGTCA CCAAAAGACAAGGACGTCAAAATTCTGCTCAGGTCATTTATTCGGCgctc atttttatttaaaattcacTACATAGAGAATAGATTTTTAGCCAAAGAGA GGAAAGAAATACCAAAGAAAAGATTCGTCCCGCTTCGTTCATGTATCCTA TATCACTCCCCTTTTTATCGCGCCCTTCGGGGTGCAATAATGGCAATTTC TTCAGATTTCTTCAATTAGCTTTTCCAGCTTTGGTCACCTTGCTGAAGCC AGATTATTCTTTGATTTTATCGAGACTTTTTTCTGCTAGtcaaataaaat tgacgttGGTCAATCATACACATGAAACAATGATAGCTAGGTAAAACTTT TTATATTCAACATTGCTGTTAAAACCAGGCCCGATCAAttgaacttgtcg aaccaatcgaacaatcgaactcaTATTGCTTCAAAGATTGCGAATGTTCG ATAAGATTCGATTAGTTTTTTTGATAATTGGTTCGatcgttcgattggtt cgacaagttcggtTTATCGGGTCTGGTTTAAACTCGTGAAGTTTTTATTC CATTACAGATTCCATCTCTCTGAGTAACGGAACGTTAGGATGTGGATGGT TTAAAGTCGATCGAAGTCgggaaaagttcgaaaaactGGTCAATGAAAAT GTGGACAGTGAACCTACCGCGTTGTTAGAGAAATTACAAACTTTCCTTGA ATGTACCGAGAGGTTTGAATTTCATATCtacgtacatgtttttttttcat aaagaacatttgaaatttttgaagcctcaatttttttagttttattaagc ctaaaatgttcttaacttgttcttattttcactattgtgtgaatattttt gcccatttttctaagaaatcgggtgttttagattgtgtaaagccttaaaa tgttcttaacttgttcttgatattttgttcatcgaagccttatgttctta tctagttttttcttatgaaaaaacgtgtaggctGTTTAGCAATTTGCTTT TTAAATGAACTAATAGAGGGAATGTAAAATTTACTCCTAATCCTGAGTTA CAAGTAATTCACAACCACCAGACGAAGAGCGATcttagtgcagtggtaga gcatccggctaagGTGCGCAAGATCGTGGGTTCATCCTCGGCCAGCTCAT ATCAAAGACTACGTACTTAGTACGAAAATGTTACTTAATTAAAGTCTCAT TAATGCCTCtcagcttgatgctcagcaattaattAAGAGTAGAATCAAGT GTAGGTGGAGCAATCCAGAGAGAAAAGGTAGTGCCCTGCCCTGCCTTCGG ATGGATAGAATATCGAGAGCCTTTGGATCGCCTCTGACTTTttggtcgca gacttacttagaCAAAGAGTAGAGTTAgggatacacgctttttttaataa gaatacactttgtAAGAATGTCcctgatgaaaatggccaaaaaattaaga acatggtaagagtatcaccatcatggaatttagcaactgaacctaagaat gccattttttaagcattttcacCTGTAATACATCAGTTACGCTCAGTATT CTCCAGACGTATAATTACATGTTAAATCTAGGTTAATCATTTTTTATTAT AGAAACTTTCCAGACGAGAACATTAAGGTAGAGAATCCATTCAATGAAGT CCTTTCATCCATTTTCATCCCAATGCACCCTCAACACAACTATGGCACAA GGTGATGAACTTTTCATTCAACTCtctcaaaaatgatttgataATATGTG AAATCGGCTGTTCAGTTAATAGCGCCCTCAGAAAAATATGATGTTAGATA ATGGATTTGTTAGGCGTATCTCACGATGCTTGAAGAAGATCATCAACTTT TTTCTGTGCCCAGAGGTGGGATTTTCCAGCGAATATTTACGCTTGAAATC AGTCAATTTTCGGCTCCCCTTGCTTAAAATACAGTAGCTCATATCATTTT TGATTAAGATACTAAAAtgtttttccccaaattttaaACTTCATTCCctc aaagaattgaaaaatattgcttGCCGTCAAAGGGAAGTATTTGTTCAAAT TTGTCTTCCACATCATACCATAgatccaacagctgattgtTGTGGAAGTG acataaaatcagtcaatatgtcacttacaaccaatcagctgttgggtccg tgatataatgttagaagacattgcaatggtgccatatcatgaatagaagt AGCCTATAGTAGACGTCACCAGTGTTTTTTCTATGCAATCAGCGTCTATT CTACTTTGTGACTTTTTCNTCGGGCTCTAAATATTCGAtcttttgacgtc actttaatctttcgaagctcctgcagtagcgaaaaaatcaaatttgagtc aaagcacttgaaaggcttctatttttcgaaaatcatcaaagtggaactca ctaaaaaacggaatgaaaaaacccggtttttggtgaggtgctcaCTAGAA TAGATGGAGATTTGTTCAaatgttctttctttttttgtcttGTGTACAGA ACGAACACGATGATGGTTGTAGAGGAGAATAATCGTGCAACATTCCTCGA ACGCACAATGTGTCAAGCTAACGACCCTACTTCACAATGGAAAAAGTCCC TCTTTCAATTCGATATGATGGTCAACTAATTTGAATCTCCTTCTCACTAA ACAAATCGCTATTGCCGACGTAGTTGCCTATGTAAAATTGGCTTTTGCCG ACTTAATGTACTATAGAACCCAGAATCTTTTGCCGACGCAAATGAATCTG AATTAGAAAGGCTCTCGCTCTcacttttagaaaattttcactGATTTATT GATTGTtaggtattcatgatatgcaccattgcaatgtcttccattccacc caatagctgattggttcaaagtgacgtattgactgattttacgtcactta caaccaatcagctgttgggtccgtgatgtaatgtcagaagacattgcagt ggtgcatatcatgaatttataATCCTTTGTGTATCCGAGTTGGTTACTTT TGTtatcattttatattttgtatttatcaattaaaaagaacaaaatgaaa taaattgaaTTTTCATGTAATTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036699XLOC_036699Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058254-exon-scaffold_309-1491911889:584073..584587TCONS_00058254-exon-scaffold_309-1491911889:584073..584587Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1510915933:584073..584587TCONS_00058254-exon-scaffold_309-1510915933:584073..584587Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1575043694:584073..584587TCONS_00058254-exon-scaffold_309-1575043694:584073..584587Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1491911889:585007..585135TCONS_00058254-exon-scaffold_309-1491911889:585007..585135Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1510915933:585007..585135TCONS_00058254-exon-scaffold_309-1510915933:585007..585135Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1575043694:585007..585135TCONS_00058254-exon-scaffold_309-1575043694:585007..585135Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1491911889:585527..585709TCONS_00058254-exon-scaffold_309-1491911889:585527..585709Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1510915933:585527..585709TCONS_00058254-exon-scaffold_309-1510915933:585527..585709Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1575043694:585527..585709TCONS_00058254-exon-scaffold_309-1575043694:585527..585709Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1491911889:586581..586734TCONS_00058254-exon-scaffold_309-1491911889:586581..586734Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1510915933:586581..586734TCONS_00058254-exon-scaffold_309-1510915933:586581..586734Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1575043694:586581..586734TCONS_00058254-exon-scaffold_309-1575043694:586581..586734Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1491911889:587625..587723TCONS_00058254-exon-scaffold_309-1491911889:587625..587723Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1510915933:587625..587723TCONS_00058254-exon-scaffold_309-1510915933:587625..587723Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1575043694:587625..587723TCONS_00058254-exon-scaffold_309-1575043694:587625..587723Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1491911889:588522..589098TCONS_00058254-exon-scaffold_309-1491911889:588522..589098Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1510915933:588522..589098TCONS_00058254-exon-scaffold_309-1510915933:588522..589098Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1575043694:588522..589098TCONS_00058254-exon-scaffold_309-1575043694:588522..589098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:584073..589098 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (7.32394 tpm) - - (28.1193 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.4095 27.9858 13.6551 13.4976 8.94615 7.32394 12.7717 13.899 13.8227 14.7976 12.1516 15.765 16.5696 17.284 19.4818 20.6345 16.7545 20.2498 8.83739 10.7253 12.0654 11.8325 13.5161 11.3815 28.1193 25.5197 13.0588 13.6565 14.379 13.6752
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
2004006008001000120014001600Expect = 3.68e-35 / Id = 31.34SequenceTNG2
Match NameE-valueIdentityDescription
TNG23.683e-3531.34Transport and Golgi organization protein 2 homolog... [more]
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