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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058261 ID=TCONS_00058261|Name=TCONS_00058261|organism=Clytia hemisphaerica|type=transcript|length=1692bpRun BLAST on NCBI protein sequence of TCONS_00058261-protein >TCONS_00058261-protein ID=TCONS_00058261-protein|Name=TCONS_00058261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp MGLTECRQKGIGILLHYETVKIIDIKNKKVGALYRFIQLIIISYVIGYVIRun BLAST on NCBI transcript from alignment at scaffold_309:662166..672147+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058261 ID=TCONS_00058261|Name=TCONS_00058261|organism=Clytia hemisphaerica|type=transcript|length=9982bp|location=Sequence derived from alignment at scaffold_309:662166..672147+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_309:662166..672147+ >TCONS_00058261 ID=TCONS_00058261|Name=TCONS_00058261|organism=Clytia hemisphaerica|type=CDS|length=15264bp|location=Sequence derived from alignment at scaffold_309:662166..672147+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058261 vs. Swiss-Prot (Human)
Match: P2RX4 (P2X purinoceptor 4 OS=Homo sapiens GN=P2RX4 PE=1 SV=2) HSP 1 Score: 327.405 bits (838), Expect = 6.140e-106 Identity = 183/397 (46.10%), Postives = 252/397 (63.48%), Query Frame = 3
Query: 174 LTECRQKGIGILLHYETVKIIDIKNKKVGALYRFIQLXXXXXXXXXXXXXXXXXQEFDVAISTVTTKLKGTTYVDFGKFNSTLFNGIRIYDPSDYVIPPQETDAVFVMTNMILTPKQSQSNCPEDSKFKDIHCKKDSDCPKMVPVKNGNGVRTGKCVSSDRNSSMTVCEIYGWCPTEVD-QLPMPNNNFSDTVPLLDGTKYSTMLVKNQISFPKFRAIRNNIIQFNDSTYLKRCHYNSDTDPLCPIFNLEDIVSSCGDNYTDVAYQGAIYGIIIEWDCNLDHSIDECLPKYQFKRLD--DVNSPISPGYNFRYADYYVE-EDTRYRVLTKAYGIKFELLVHGKAGKFNVIPLLTNLGAGMALLGIATVWCDFIVMYLLKKRNVYREHKYQRVDDDSQ 1352
+ C L Y+T +I+ I+++KVG + R +QL+I++YVIG+V V++KGYQE D +S+VTTK+KG + K G RI+D +DYVIP QE +++FVMTN+ILT Q+Q CPE + CK D+ C + NGV TG+CV+ N S+ CE+ WCP E D +P P L + T+LVKN I +PKF + NI+ +TYLK C Y++ TDP CPIF L IV + G ++ D+A +G I GI + WDCNLD + CLP+Y F+RLD DV +SPGYNFR+A YY + R L KAYGI+F+++V GKAGKF++IP + N+G+G+ALLG+ATV CD IV+Y +KKR YRE KY+ V+D Q
Sbjct: 1 MAGCCAALAAFLFEYDTPRIVLIRSRKVGLMNRAVQLLILAYVIGWVFVWEKGYQETDSVVSSVTTKVKGVAVTNTSKL------GFRIWDVADYVIPAQEENSLFVMTNVILTMNQTQGLCPEIPDATTV-CKSDASCTAGSAGTHSNGVSTGRCVAF--NGSVKTCEVAAWCPVEDDTHVPQP--------AFLKAAENFTLLVKNNIWYPKFNFSKRNILPNITTTYLKSCIYDAKTDPFCPIFRLGKIVENAGHSFQDMAVEGGIMGIQVNWDCNLDRAASLCLPRYSFRRLDTRDVEHNVSPGYNFRFAKYYRDLAGNEQRTLIKAYGIRFDIIVFGKAGKFDIIPTMINIGSGLALLGMATVLCDIIVLYCMKKRLYYREKKYKYVEDYEQ 380 The following BLAST results are available for this feature:
BLAST of TCONS_00058261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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