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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058302 ID=TCONS_00058302|Name=TCONS_00058302|organism=Clytia hemisphaerica|type=transcript|length=1288bpRun BLAST on NCBI protein sequence of TCONS_00058302-protein >TCONS_00058302-protein ID=TCONS_00058302-protein|Name=TCONS_00058302-protein|organism=Clytia hemisphaerica|type=polypeptide|length=429bp LKMNQSRKQMVLEKSKFHCINFLLSYETGKVVEIQNKKVAFWYRLIQLSVRun BLAST on NCBI transcript from alignment at scaffold_309:672814..694604- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058302 ID=TCONS_00058302|Name=TCONS_00058302|organism=Clytia hemisphaerica|type=transcript|length=21791bp|location=Sequence derived from alignment at scaffold_309:672814..694604- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_309:672814..694604- >TCONS_00058302 ID=TCONS_00058302|Name=TCONS_00058302|organism=Clytia hemisphaerica|type=CDS|length=16731bp|location=Sequence derived from alignment at scaffold_309:672814..694604- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058302 vs. Swiss-Prot (Human)
Match: P2RX4 (P2X purinoceptor 4 OS=Homo sapiens GN=P2RX4 PE=1 SV=2) HSP 1 Score: 270.011 bits (689), Expect = 1.902e-85 Identity = 166/377 (44.03%), Postives = 235/377 (62.33%), Query Frame = 1
Query: 64 FLLSYETGKVVEIQNKKVAFWYRLIQLSXXXXXXXXXXXXDKGYQEIDSAISSTNTKVKGITHVNFGNFPSTFFNGRMIYDPQDYVI-KQDGDSFFVMTNMVITPKQYQGKCPEDPESYRTICKTDKDCQQGTSNKYGHGERSGRCVPSDRNSTVKVCESYGWCPTEYDV-LPMENYNNFSKTIPLLDGTKESTVLIKNQIHFPKFKVTRNNIVHNQKKGSYMKRCLHNEETDPFCPIFKLRNIVENCGDNYTXXXXXXXXXXXXXXWDCNLDHSIYDCVPEYKFERLD--DEKTPLSHGYNFRYVNYFVE-NGTRYRTLTKAYGIKFELVVHGEAGKFSFIPLMXXXXXXXXXXXXXTFWCDFIVLNLAKKRNVYR 1179
FL Y+T ++V I+++KV R +QL ++ YVIG+ +++KGYQE DS +SS TKVKG+ N G I+D DYVI Q+ +S FVMTN+++T Q QG CPE P++ T+CK+D C G++ + +G +GRCV N +VK CE WCP E D +P + L + T+L+KN I +PKF ++ NI+ N +Y+K C+++ +TDPFCPIF+L IVEN G ++ + +GGI GI + WDCNLD + C+P Y F RLD D + +S GYNFR+ Y+ + G RTL KAYGI+F+++V G+AGKF IP M+N+G+G+ LLG+AT CD IVL KKR YR
Sbjct: 11 FLFEYDTPRIVLIRSRKVGLMNRAVQLLILAYVIGWVFVWEKGYQETDSVVSSVTTKVKGVAVTNTSKL------GFRIWDVADYVIPAQEENSLFVMTNVILTMNQTQGLCPEIPDA-TTVCKSDASCTAGSAGTHSNGVSTGRCVAF--NGSVKTCEVAAWCPVEDDTHVPQPAF---------LKAAENFTLLVKNNIWYPKFNFSKRNILPNITT-TYLKSCIYDAKTDPFCPIFRLGKIVENAGHSFQDMAVEGGIMGIQVNWDCNLDRAASLCLPRYSFRRLDTRDVEHNVSPGYNFRFAKYYRDLAGNEQRTLIKAYGIRFDIIVFGKAGKFDIIPTMINIGSGLALLGMATVLCDIIVLYCMKKRLYYR 368 The following BLAST results are available for this feature:
BLAST of TCONS_00058302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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