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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058305 ID=TCONS_00058305|Name=TCONS_00058305|organism=Clytia hemisphaerica|type=transcript|length=370bp
GTCTTAGTTAGAATGTATttgtatcaaaatcaaaacaagaagaAAGAAAC
AAAGCGAAACAttgaagatgggattcgaagaTTTTAAAATGCAAGATTTG
AGTGCTTTATTGACCTATGAAACTGGTAAAGTTGTGGAAATTCAGAATAA
GAAAGTTGGCATCTGGTATCGCTCCATTCAAATTGCCATCATCATTTACG
TCATTGGTTACGTCATCATTTACGACAAAGGTTACCAAGCAACAGATTCT
GCCATCAGTTCAACCAATACCAAAGTCAAGGGAATCACACATGTTgattt
tgggaatttcccttcCACCCTTTTTAATGGGAGGAGAGTTTATGATCCTG
AAGACTATGTAGTTAAACAG Run BLAST on NCBI protein sequence of TCONS_00058305-protein >TCONS_00058305-protein ID=TCONS_00058305-protein|Name=TCONS_00058305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MGFEDFKMQDLSALLTYETGKVVEIQNKKVGIWYRSIQIAIIIYVIGYVI
IYDKGYQATDSAISSTNTKVKGITHVDFGNFPSTLFNGRRVYDPEDYVVK
Q Run BLAST on NCBI transcript from alignment at scaffold_309:679890..680677- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058305 ID=TCONS_00058305|Name=TCONS_00058305|organism=Clytia hemisphaerica|type=transcript|length=788bp|location=Sequence derived from alignment at scaffold_309:679890..680677- (Clytia hemisphaerica)
GTCTTAGTTAGAATGTATTTGTATCAAAATCAAAACAAGAAGAAAGAAAC
AAAGCGAAACATTGAAGATGGGATTCGAAGATTTTAAAATGCAAGATTTG
AGTGCTTTATTGACCTATGAAACTGGTAAAGTTGTGGAAATTCAGAATAA
GAAAGTTGGCATCTGGTATCGCTCCATTCAAATTGCCATCATCATTTACG
TCATTGGGTGAGGCTTTTCTTGGGATCCAATGCAATGGAAATTATTCTAA
AAATGATTTTAAAACTTAATACTTTGAACATTATTGGATTATTTACTAGT
TGCTTCCTTCATTCCTCTTTACATGTTTTATTATAAGAACATCTAAAAAT
TTCGAAGCCTTTGGATGTTCTTAACTTTTTAGTTTTAACCCTAAAATGTT
CTTAACTTATTCTTAATATTTTGCCCATCGAAGCCTTATGTTCTTATACA
GCCTTTGCAGTTTTTATATAAAAGATATGTAGTTATTTCTTTTTATGTCA
ACTGAAGGGACCAGAAAACTTGTTCGAGTTAAGGAGATATTCGAATTATA
GAGGTCAGAATCATGGAGACTCCACTGTATAATCTCTTCTGTTTTCTAAT
CAATGGTTAACCCCTCGTTATTTAGTTACGTCATCATTTACGACAAAGGT
TACCAAGCAACAGATTCTGCCATCAGTTCAACCAATACCAAAGTCAAGGG
AATCACACATGTTGATTTTGGGAATTTCCCTTCCACCCTTTTTAATGGGA
GGAGAGTTTATGATCCTGAAGACTATGTAGTTAAACAG Coding sequence (CDS) from alignment at scaffold_309:679890..680677- >TCONS_00058305 ID=TCONS_00058305|Name=TCONS_00058305|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_309:679890..680677- (Clytia hemisphaerica)
TTACGTCATCATTTACGACAAAGGTTACCAAGCAACAGATTCTGCCATCA
GTTCAACCAATACCAAAGTCAAGGGAATCACACATGTTGATTTTGGGAAT
TTCCCTTCCACCCTTTTTAATGGGAGGAGAGTTTATGATCCTGAAGACTA
TGTAGTTAAACAGATGGGATTCGAAGATTTTAAAATGCAAGATTTGAGTG
CTTTATTGACCTATGAAACTGGTAAAGTTGTGGAAATTCAGAATAAGAAA
GTTGGCATCTGGTATCGCTCCATTCAAATTGCCATCATCATTTACGTCAT
TGGTTACGTCATCATTTACGACAAAGGTTACCAAGCAACAGATTCTGCCA
TCAGTTCAACCAATACCAAAGTCAAGGGAATCACACATGTTGATTTTGGG
AATTTCCCTTCCACCCTTTTTAATGGGAGGAGAGTTTATGATCCTGAAGA
CTATGTAGTTAAACAGATGGGATTCGAAGATTTTAAAATGCAAGATTTGA
GTGCTTTATTGACCTATGAAACTGGTAAAGTTGTGGAAATTCAGAATAAG
AAAGTTGGCATCTGGTATCGCTCCATTCAAATTGCCATCATCATTTACGT
CATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058305-exon-scaffold_309-1575043694:680471..680677 | TCONS_00058305-exon-scaffold_309-1575043694:680471..680677 | Clytia hemisphaerica | exon |
| TCONS_00058305-exon-scaffold_309-1575043694:679890..680052 | TCONS_00058305-exon-scaffold_309-1575043694:679890..680052 | Clytia hemisphaerica | exon |
| TCONS_00058305-exon-scaffold_309-1510915933:680471..680677 | TCONS_00058305-exon-scaffold_309-1510915933:680471..680677 | Clytia hemisphaerica | exon |
| TCONS_00058305-exon-scaffold_309-1510915933:679890..680052 | TCONS_00058305-exon-scaffold_309-1510915933:679890..680052 | Clytia hemisphaerica | exon |
| TCONS_00058305-exon-scaffold_309-1491911889:680471..680677 | TCONS_00058305-exon-scaffold_309-1491911889:680471..680677 | Clytia hemisphaerica | exon |
| TCONS_00058305-exon-scaffold_309-1491911889:679890..680052 | TCONS_00058305-exon-scaffold_309-1491911889:679890..680052 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:679890..680677 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001429 | P2X_purnocptor |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0033198 | response to ATP |
| GO:0098655 | cation transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0001614 | purinergic nucleotide receptor activity |
| GO:0004931 | extracellular ATP-gated cation channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005887 | integral component of plasma membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0098655 |
cation transmembrane transport |
| biological_process |
GO:0033198 |
response to ATP |
| cellular_component |
GO:0005887 |
integral component of plasma membrane |
| molecular_function |
GO:0004931 |
extracellular ATP-gated cation channel activity |
| molecular_function |
GO:0001614 |
purinergic nucleotide receptor activity |
Blast
The following BLAST results are available for this feature:
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