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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058306 ID=TCONS_00058306|Name=TCONS_00058306|organism=Clytia hemisphaerica|type=transcript|length=1422bpRun BLAST on NCBI transcript from alignment at scaffold_309:684908..694604- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058306 ID=TCONS_00058306|Name=TCONS_00058306|organism=Clytia hemisphaerica|type=transcript|length=9697bp|location=Sequence derived from alignment at scaffold_309:684908..694604- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058306 vs. Swiss-Prot (Human)
Match: P2RX4 (P2X purinoceptor 4 OS=Homo sapiens GN=P2RX4 PE=1 SV=2) HSP 1 Score: 281.182 bits (718), Expect = 3.157e-89 Identity = 168/378 (44.44%), Postives = 241/378 (63.76%), Query Frame = 1
Query: 64 FLLSYETGKVVEIQNKKVAFWYRLIQLSXXXXXXXXXXXXDKGYQEIDSAISSTNTKVKGITHVNFGNFPSTFFNGRMIYDPQDYVI-KQDGDSFFVMTNMVITPKQYQGKCPEDPESYRTICKTDKDCQQGTSNKYGHGERSGRCVPSDRNSTVKVCESYGWCPTEYDV-LPMENYNNFSKTIPLLDGTKESTVLIKNQIHFPKFKVTRNNIVHNQKKGSYMKRCLHNEETDPFCPIFKLRNIVENCGDNYTXXXXXXXXXXXXXXWDCNLDHSIYDCVPEYKFERLD--DEKTPLSHGYNFRYVNYFVE-NGTRYRTLTKAYGIKFELVVFGKAGKFDIIPLLMNXXXXXXXXXXXTIWCDFIVLNLVEKKEVYRE 1182
FL Y+T ++V I+++KV R +QL ++ YVIG+ +++KGYQE DS +SS TKVKG+ N G I+D DYVI Q+ +S FVMTN+++T Q QG CPE P++ T+CK+D C G++ + +G +GRCV N +VK CE WCP E D +P + L + T+L+KN I +PKF ++ NI+ N +Y+K C+++ +TDPFCPIF+L IVEN G ++ + +GGI GI + WDCNLD + C+P Y F RLD D + +S GYNFR+ Y+ + G RTL KAYGI+F+++VFGKAGKFDIIP ++N+G+G+ LLG+AT+ CD IVL ++K+ YRE
Sbjct: 11 FLFEYDTPRIVLIRSRKVGLMNRAVQLLILAYVIGWVFVWEKGYQETDSVVSSVTTKVKGVAVTNTSKL------GFRIWDVADYVIPAQEENSLFVMTNVILTMNQTQGLCPEIPDA-TTVCKSDASCTAGSAGTHSNGVSTGRCVAF--NGSVKTCEVAAWCPVEDDTHVPQPAF---------LKAAENFTLLVKNNIWYPKFNFSKRNILPNITT-TYLKSCIYDAKTDPFCPIFRLGKIVENAGHSFQDMAVEGGIMGIQVNWDCNLDRAASLCLPRYSFRRLDTRDVEHNVSPGYNFRFAKYYRDLAGNEQRTLIKAYGIRFDIIVFGKAGKFDIIPTMINIGSGLALLGMATVLCDIIVLYCMKKRLYYRE 369 The following BLAST results are available for this feature:
BLAST of TCONS_00058306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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